RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 CPB1P15086 417 aa9.26□□□□□ -0.93
VPS50-213ENST00000477572 ATP2B4P23634 1241 aa9.26□□□□□ -0.93
VPS50-213ENST00000477572 CHRNA4P43681 627 aa9.26□□□□□ -0.93
VPS50-213ENST00000477572 PSAPL1Q6NUJ1 521 aa9.26□□□□□ -0.93
VPS50-213ENST00000477572 CD163Q86VB7 1156 aa9.26□□□□□ -0.93
VPS50-213ENST00000477572 JPH1Q9HDC5 661 aaPredicted RBP9.26□□□□□ -0.93
VPS50-213ENST00000477572 SEPT3Q9UH03 358 aa9.26□□□□□ -0.93
VPS50-213ENST00000477572 TNFRSF10BO14763 440 aa9.25□□□□□ -0.93
VPS50-213ENST00000477572 XYLBO75191 536 aa9.25□□□□□ -0.93
VPS50-213ENST00000477572 FAM35AQ86V20 835 aa9.25□□□□□ -0.93
VPS50-213ENST00000477572 ALYREFQ86V81 257 aaKnown RBP9.25□□□□□ -0.93
VPS50-213ENST00000477572 ZBTB42B2RXF5 422 aa9.24□□□□□ -0.93
VPS50-213ENST00000477572 LILRB5O75023 590 aa9.24□□□□□ -0.93
VPS50-213ENST00000477572 NID1P14543 1247 aa9.24□□□□□ -0.93
VPS50-213ENST00000477572 BRD2P25440 801 aaKnown RBP9.24□□□□□ -0.93
VPS50-213ENST00000477572 SUZ12Q15022 739 aaKnown RBP9.24□□□□□ -0.93
VPS50-213ENST00000477572 TRAPPC3LQ5T215 181 aa9.24□□□□□ -0.93
VPS50-213ENST00000477572 HFE2Q6ZVN8 426 aa9.24□□□□□ -0.93
VPS50-213ENST00000477572 DHX32Q7L7V1 743 aaKnown RBP9.24□□□□□ -0.93
VPS50-213ENST00000477572 CARNS1A5YM72 827 aa9.23□□□□□ -0.93
VPS50-213ENST00000477572 EFCC1Q9HA90 598 aa9.23□□□□□ -0.93
VPS50-213ENST00000477572 KCNMB2Q9Y691 235 aa9.23□□□□□ -0.93
VPS50-213ENST00000477572 ZBTB39O15060 712 aa9.22□□□□□ -0.93
VPS50-213ENST00000477572 PTCD1O75127 700 aaKnown RBP9.22□□□□□ -0.93
VPS50-213ENST00000477572 RGS9O75916 674 aaPredicted RBP9.22□□□□□ -0.93
VPS50-213ENST00000477572 MAP3K6O95382 1288 aa9.22□□□□□ -0.93
VPS50-213ENST00000477572 PLAURQ03405 335 aa9.22□□□□□ -0.93
VPS50-213ENST00000477572 PRRT3Q5FWE3 981 aa9.22□□□□□ -0.93
VPS50-213ENST00000477572 COL26A1Q96A83 441 aa9.22□□□□□ -0.93
VPS50-213ENST00000477572 PRDM6Q9NQX0 595 aa9.22□□□□□ -0.93
VPS50-213ENST00000477572 SPDYE3A6NKU9 549 aa9.21□□□□□ -0.94
VPS50-213ENST00000477572 SPATA31C1P0DKV0 1188 aa9.21□□□□□ -0.94
VPS50-213ENST00000477572 TRIM28Q13263 835 aaKnown RBP9.21□□□□□ -0.94
VPS50-213ENST00000477572 TRIP4Q15650 581 aaPredicted RBP9.21□□□□□ -0.94
VPS50-213ENST00000477572 BAG6P46379 1132 aa9.2□□□□□ -0.94
VPS50-213ENST00000477572 AFF1P51825 1210 aaKnown RBP9.2□□□□□ -0.94
VPS50-213ENST00000477572 GRIK4Q16099 956 aa9.2□□□□□ -0.94
VPS50-213ENST00000477572 PERM1Q5SV97 790 aa9.2□□□□□ -0.94
VPS50-213ENST00000477572 GPR152Q8TDT2 470 aa9.2□□□□□ -0.94
VPS50-213ENST00000477572 J3QW42 95 aa9.19□□□□□ -0.94
VPS50-213ENST00000477572 MMP20O60882 483 aa9.19□□□□□ -0.94
VPS50-213ENST00000477572 FURINP09958 794 aa9.19□□□□□ -0.94
VPS50-213ENST00000477572 ZAP70P43403 619 aa9.19□□□□□ -0.94
VPS50-213ENST00000477572 ELMSAN1Q6PJG2 1045 aa9.19□□□□□ -0.94
VPS50-213ENST00000477572 DMRTC2Q8IXT2 367 aaPredicted RBP9.19□□□□□ -0.94
VPS50-213ENST00000477572 TRPM4Q8TD43 1214 aa9.19□□□□□ -0.94
VPS50-213ENST00000477572 NSUN5Q96P11 429 aaKnown RBP9.19□□□□□ -0.94
VPS50-213ENST00000477572 TLR7Q9NYK1 1049 aaKnown RBP9.19□□□□□ -0.94
VPS50-213ENST00000477572 STIM2Q9P246 746 aa9.19□□□□□ -0.94
VPS50-213ENST00000477572 UBAP1LF5GYI3 381 aa9.18□□□□□ -0.94
VPS50-213ENST00000477572 EIF2AK2P19525 551 aaKnown RBP9.18□□□□□ -0.94
VPS50-213ENST00000477572 ATCAYQ86WG3 371 aa9.18□□□□□ -0.94
VPS50-213ENST00000477572 LPIN3Q9BQK8 851 aa9.18□□□□□ -0.94
VPS50-213ENST00000477572 TMEM88BA6NKF7 163 aa9.17□□□□□ -0.94
VPS50-213ENST00000477572 EGFRP00533 1210 aa9.17□□□□□ -0.94
VPS50-213ENST00000477572 GPLD1P80108 840 aa9.17□□□□□ -0.94
VPS50-213ENST00000477572 PIK3R5Q8WYR1 880 aa9.17□□□□□ -0.94
VPS50-213ENST00000477572 ARID3AQ99856 593 aa9.17□□□□□ -0.94
VPS50-213ENST00000477572 SMG9Q9H0W8 520 aaKnown RBP9.17□□□□□ -0.94
VPS50-213ENST00000477572 C11orf16Q9NQ32 467 aa9.17□□□□□ -0.94
VPS50-213ENST00000477572 SUPT5HO00267 1087 aaKnown RBP9.16□□□□□ -0.94
VPS50-213ENST00000477572 APBA3O96018 575 aa9.16□□□□□ -0.94
VPS50-213ENST00000477572 PSAPP07602 524 aa9.16□□□□□ -0.94
VPS50-213ENST00000477572 DOC2BQ14184 412 aa9.16□□□□□ -0.94
VPS50-213ENST00000477572 PCSK7Q16549 785 aa9.16□□□□□ -0.94
VPS50-213ENST00000477572 A0A0A0MRY4 1105 aa9.15□□□□□ -0.94
VPS50-213ENST00000477572 PPP1R15AO75807 674 aaPredicted RBP9.15□□□□□ -0.94
VPS50-213ENST00000477572 NRLP54845 237 aa9.15□□□□□ -0.94
VPS50-213ENST00000477572 MTMR3Q13615 1198 aa9.15□□□□□ -0.94
VPS50-213ENST00000477572 NLRP13Q86W25 1043 aa9.15□□□□□ -0.94
VPS50-213ENST00000477572 LOC102724428A0A0B4J2F2 783 aa9.14□□□□□ -0.95
VPS50-213ENST00000477572 ARID4AP29374 1257 aaPredicted RBP9.14□□□□□ -0.95
VPS50-213ENST00000477572 GATA4P43694 442 aa9.14□□□□□ -0.95
VPS50-213ENST00000477572 SIK1P57059 783 aa9.14□□□□□ -0.95
VPS50-213ENST00000477572 SHISA2Q6UWI4 295 aa9.14□□□□□ -0.95
VPS50-213ENST00000477572 RAC1P63000 192 aa9.13□□□□□ -0.95
VPS50-213ENST00000477572 GRIK5Q16478 980 aa9.13□□□□□ -0.95
VPS50-213ENST00000477572 ABTB2Q8N961 1025 aa9.13□□□□□ -0.95
VPS50-213ENST00000477572 GTF3C2Q8WUA4 911 aaPredicted RBP9.13□□□□□ -0.95
VPS50-213ENST00000477572 PLD4Q96BZ4 506 aa9.13□□□□□ -0.95
VPS50-213ENST00000477572 ADAM23O75077 832 aa9.12□□□□□ -0.95
VPS50-213ENST00000477572 SSFA2P28290 1259 aa9.12□□□□□ -0.95
VPS50-213ENST00000477572 MSL1Q68DK7 614 aa9.12□□□□□ -0.95
VPS50-213ENST00000477572 FAM13BQ9NYF5 915 aa9.12□□□□□ -0.95
VPS50-213ENST00000477572 FRRS1LQ9P0K9 344 aa9.12□□□□□ -0.95
VPS50-213ENST00000477572 K7ELQ4 463 aaPredicted RBP9.11□□□□□ -0.95
VPS50-213ENST00000477572 SELPP16109 830 aa9.11□□□□□ -0.95
VPS50-213ENST00000477572 COL13A1Q5TAT6 717 aaPredicted RBP9.11□□□□□ -0.95
VPS50-213ENST00000477572 GDF6Q6KF10 455 aaPredicted RBP9.11□□□□□ -0.95
VPS50-213ENST00000477572 WFDC8Q8IUA0 241 aa9.11□□□□□ -0.95
VPS50-213ENST00000477572 HELQQ8TDG4 1101 aa9.11□□□□□ -0.95
VPS50-213ENST00000477572 NUDT16Q96DE0 195 aaKnown RBP9.11□□□□□ -0.95
VPS50-213ENST00000477572 GHRHP01286 108 aa9.1□□□□□ -0.95
VPS50-213ENST00000477572 CYP2E1P05181 493 aaPredicted RBP9.1□□□□□ -0.95
VPS50-213ENST00000477572 ELNP15502 786 aa9.1□□□□□ -0.95
VPS50-213ENST00000477572 DNM1Q05193 864 aaKnown RBP9.1□□□□□ -0.95
VPS50-213ENST00000477572 TTC39BQ5VTQ0 682 aaPredicted RBP9.1□□□□□ -0.95
VPS50-213ENST00000477572 EDEM1Q92611 657 aa9.1□□□□□ -0.95
VPS50-213ENST00000477572 FNDC3AQ9Y2H6 1198 aaKnown RBP9.1□□□□□ -0.95
VPS50-213ENST00000477572 A6NHS1 94 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms