RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 TRIM22Q8IYM9 498 aa12.93□□□□□ -0.34
COL27A1-204ENST00000477421 INTS4Q96HW7 963 aaKnown RBP12.93□□□□□ -0.34
COL27A1-204ENST00000477421 UBAC1Q9BSL1 405 aa12.93□□□□□ -0.34
COL27A1-204ENST00000477421 METTL22Q9BUU2 404 aaPredicted RBP12.93□□□□□ -0.34
COL27A1-204ENST00000477421 TLR7Q9NYK1 1049 aaKnown RBP12.93□□□□□ -0.34
COL27A1-204ENST00000477421 RXRAP19793 462 aa12.93□□□□□ -0.34
COL27A1-204ENST00000477421 HSPA4P34932 840 aa12.93□□□□□ -0.34
COL27A1-204ENST00000477421 IGHMBP2P38935 993 aaKnown RBP12.93□□□□□ -0.34
COL27A1-204ENST00000477421 TTLL5Q6EMB2 1281 aa12.93□□□□□ -0.34
COL27A1-204ENST00000477421 FSIP1Q8NA03 581 aa12.93□□□□□ -0.34
COL27A1-204ENST00000477421 CLCN1P35523 988 aa12.92□□□□□ -0.34
COL27A1-204ENST00000477421 ZSCAN25Q6NSZ9 544 aa12.92□□□□□ -0.34
COL27A1-204ENST00000477421 QRICH2Q9H0J4 1663 aa12.92□□□□□ -0.34
COL27A1-204ENST00000477421 PLEKHG1Q9ULL1 1385 aa12.92□□□□□ -0.34
COL27A1-204ENST00000477421 IBTKQ9P2D0 1353 aaPredicted RBP12.92□□□□□ -0.34
COL27A1-204ENST00000477421 KLF18A0A0U1RQI7 1052 aa12.92□□□□□ -0.34
COL27A1-204ENST00000477421 SERPINC1P01008 464 aa12.92□□□□□ -0.34
COL27A1-204ENST00000477421 HOXB7P09629 217 aa12.92□□□□□ -0.34
COL27A1-204ENST00000477421 OLFM4Q6UX06 510 aa12.92□□□□□ -0.34
COL27A1-204ENST00000477421 NCOA5Q9HCD5 579 aaKnown RBP12.92□□□□□ -0.34
COL27A1-204ENST00000477421 IL2RBP14784 551 aa12.92□□□□□ -0.34
COL27A1-204ENST00000477421 BRD2P25440 801 aaKnown RBP12.92□□□□□ -0.34
COL27A1-204ENST00000477421 ATP2B3Q16720 1220 aa12.92□□□□□ -0.34
COL27A1-204ENST00000477421 ADCK5Q3MIX3 580 aa12.92□□□□□ -0.34
COL27A1-204ENST00000477421 TNNI3KQ59H18 835 aa12.92□□□□□ -0.34
COL27A1-204ENST00000477421 SLC9C2Q5TAH2 1124 aa12.92□□□□□ -0.34
COL27A1-204ENST00000477421 FPGT-TNNI3KV9GXZ4 949 aa12.92□□□□□ -0.34
COL27A1-204ENST00000477421 A0A0D9SFI3 127 aa12.91□□□□□ -0.34
COL27A1-204ENST00000477421 IL15P40933 162 aaPredicted RBP12.91□□□□□ -0.34
COL27A1-204ENST00000477421 ARHGEF25Q86VW2 580 aa12.91□□□□□ -0.34
COL27A1-204ENST00000477421 AMOTL1Q8IY63 956 aa12.91□□□□□ -0.34
COL27A1-204ENST00000477421 CEP57L1Q8IYX8 460 aa12.91□□□□□ -0.34
COL27A1-204ENST00000477421 HMG20BQ9P0W2 317 aa12.91□□□□□ -0.34
COL27A1-204ENST00000477421 CDK12Q9NYV4 1490 aaPredicted RBP12.91□□□□□ -0.34
COL27A1-204ENST00000477421 SLC27A2O14975 620 aa12.91□□□□□ -0.34
COL27A1-204ENST00000477421 TTLL7Q6ZT98 887 aa12.91□□□□□ -0.34
COL27A1-204ENST00000477421 BABAM1Q9NWV8 329 aa12.91□□□□□ -0.34
COL27A1-204ENST00000477421 CFAP74Q9C0B2 1584 aa12.91□□□□□ -0.34
COL27A1-204ENST00000477421 LRRC7Q96NW7 1537 aa12.91□□□□□ -0.34
COL27A1-204ENST00000477421 A0A1B0GUL7 405 aa12.91□□□□□ -0.34
COL27A1-204ENST00000477421 NEURL1BA8MQ27 555 aa12.91□□□□□ -0.34
COL27A1-204ENST00000477421 IFIT3O14879 490 aaKnown RBP12.91□□□□□ -0.34
COL27A1-204ENST00000477421 HMGB1P09429 215 aaKnown RBP12.91□□□□□ -0.34
COL27A1-204ENST00000477421 CNKSR2Q8WXI2 1034 aa12.91□□□□□ -0.34
COL27A1-204ENST00000477421 HOOK1Q9UJC3 728 aaKnown RBP12.91□□□□□ -0.34
COL27A1-204ENST00000477421 NPM3O75607 178 aaKnown RBP12.9□□□□□ -0.34
COL27A1-204ENST00000477421 MEX3CQ5U5Q3 659 aaKnown RBP12.9□□□□□ -0.34
COL27A1-204ENST00000477421 AXIN2Q9Y2T1 843 aa12.9□□□□□ -0.34
COL27A1-204ENST00000477421 CLSTN1O94985 981 aa12.9□□□□□ -0.34
COL27A1-204ENST00000477421 TPM3P06753 285 aa12.9□□□□□ -0.34
COL27A1-204ENST00000477421 TPM2P07951 284 aa12.9□□□□□ -0.34
COL27A1-204ENST00000477421 GNL3LQ9NVN8 582 aaKnown RBP12.9□□□□□ -0.34
COL27A1-204ENST00000477421 POLR1AO95602 1720 aaPredicted RBP12.9□□□□□ -0.34
COL27A1-204ENST00000477421 PTPRMP28827 1452 aa12.9□□□□□ -0.34
COL27A1-204ENST00000477421 XBP1P17861 261 aa12.9□□□□□ -0.34
COL27A1-204ENST00000477421 HMGN5P82970 282 aaKnown RBP12.9□□□□□ -0.34
COL27A1-204ENST00000477421 PCMTD1Q96MG8 357 aaPredicted RBP12.9□□□□□ -0.34
COL27A1-204ENST00000477421 RANBP6O60518 1105 aaKnown RBP12.89□□□□□ -0.35
COL27A1-204ENST00000477421 JAK2O60674 1132 aa12.89□□□□□ -0.35
COL27A1-204ENST00000477421 HSP90AA4PQ58FG1 418 aa12.89□□□□□ -0.35
COL27A1-204ENST00000477421 CCAR1Q8IX12 1150 aaKnown RBP12.89□□□□□ -0.35
COL27A1-204ENST00000477421 JMYQ8N9B5 988 aa12.89□□□□□ -0.35
COL27A1-204ENST00000477421 TRMT1Q9NXH9 659 aaKnown RBP12.89□□□□□ -0.35
COL27A1-204ENST00000477421 KIDINS220Q9ULH0 1771 aa12.89□□□□□ -0.35
COL27A1-204ENST00000477421 NLRP1Q9C000 1473 aa12.89□□□□□ -0.35
COL27A1-204ENST00000477421 INO80Q9ULG1 1556 aaPredicted RBP12.89□□□□□ -0.35
COL27A1-204ENST00000477421 MAP3K12Q12852 859 aa12.89□□□□□ -0.35
COL27A1-204ENST00000477421 OTUD7BQ6GQQ9 843 aa12.89□□□□□ -0.35
COL27A1-204ENST00000477421 C16orf45Q96MC5 204 aaPredicted RBP12.89□□□□□ -0.35
COL27A1-204ENST00000477421 PTCH1Q13635 1447 aa12.89□□□□□ -0.35
COL27A1-204ENST00000477421 ARHGEF40Q8TER5 1519 aa12.89□□□□□ -0.35
COL27A1-204ENST00000477421 BRD1O95696 1058 aa12.89□□□□□ -0.35
COL27A1-204ENST00000477421 ME3Q16798 604 aa12.89□□□□□ -0.35
COL27A1-204ENST00000477421 DNAJC25Q9H1X3 360 aa12.89□□□□□ -0.35
COL27A1-204ENST00000477421 KIF24Q5T7B8 1368 aa12.89□□□□□ -0.35
COL27A1-204ENST00000477421 ANO6Q4KMQ2 910 aa12.88□□□□□ -0.35
COL27A1-204ENST00000477421 DNAJC10Q8IXB1 793 aa12.88□□□□□ -0.35
COL27A1-204ENST00000477421 GPT2Q8TD30 523 aa12.88□□□□□ -0.35
COL27A1-204ENST00000477421 BTG4Q9NY30 223 aa12.88□□□□□ -0.35
COL27A1-204ENST00000477421 PHKG2P15735 406 aa12.88□□□□□ -0.35
COL27A1-204ENST00000477421 KIF2CQ99661 725 aa12.88□□□□□ -0.35
COL27A1-204ENST00000477421 MARCKSP29966 332 aaPredicted RBP12.88□□□□□ -0.35
COL27A1-204ENST00000477421 PLBD2Q8NHP8 589 aa12.88□□□□□ -0.35
COL27A1-204ENST00000477421 SLC12A7Q9Y666 1083 aa12.88□□□□□ -0.35
COL27A1-204ENST00000477421 ATP2B2Q01814 1243 aa12.87□□□□□ -0.35
COL27A1-204ENST00000477421 TMEM67Q5HYA8 995 aa12.87□□□□□ -0.35
COL27A1-204ENST00000477421 CDC37L1Q7L3B6 337 aa12.87□□□□□ -0.35
COL27A1-204ENST00000477421 LUZP1Q86V48 1076 aa12.87□□□□□ -0.35
COL27A1-204ENST00000477421 OSBPL3Q9H4L5 887 aa12.87□□□□□ -0.35
COL27A1-204ENST00000477421 CLIP2Q9UDT6 1046 aa12.87□□□□□ -0.35
COL27A1-204ENST00000477421 GOLGA8AA7E2F4 631 aa12.87□□□□□ -0.35
COL27A1-204ENST00000477421 KLHL10Q6JEL2 608 aa12.87□□□□□ -0.35
COL27A1-204ENST00000477421 C17orf53Q8N3J3 647 aaPredicted RBP12.87□□□□□ -0.35
COL27A1-204ENST00000477421 NCOA7Q8NI08 942 aa12.87□□□□□ -0.35
COL27A1-204ENST00000477421 BRMS1Q9HCU9 246 aa12.87□□□□□ -0.35
COL27A1-204ENST00000477421 DDX19AQ9NUU7 478 aaKnown RBP12.87□□□□□ -0.35
COL27A1-204ENST00000477421 LAMC1P11047 1609 aa12.87□□□□□ -0.35
COL27A1-204ENST00000477421 PTPDC1A2A3K4 754 aa12.87□□□□□ -0.35
COL27A1-204ENST00000477421 CDKL5O76039 1030 aa12.87□□□□□ -0.35
COL27A1-204ENST00000477421 TPM1P09493 284 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms