RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 HOXB7P09629 217 aa9.96□□□□□ -0.82
VAPB-205ENST00000476395 KMT5BQ4FZB7 885 aa9.96□□□□□ -0.82
VAPB-205ENST00000476395 ANKLE2Q86XL3 938 aa9.96□□□□□ -0.82
VAPB-205ENST00000476395 PRDM16Q9HAZ2 1276 aa9.96□□□□□ -0.82
VAPB-205ENST00000476395 DIAPH3Q9NSV4 1193 aa9.96□□□□□ -0.82
VAPB-205ENST00000476395 LIMCH1Q9UPQ0 1083 aa9.96□□□□□ -0.82
VAPB-205ENST00000476395 TTC41PQ6P2S7 1318 aa9.96□□□□□ -0.82
VAPB-205ENST00000476395 MED23Q9ULK4 1368 aa9.95□□□□□ -0.82
VAPB-205ENST00000476395 AFDNP55196 1824 aaKnown RBP9.95□□□□□ -0.82
VAPB-205ENST00000476395 CHGBP05060 677 aa9.95□□□□□ -0.82
VAPB-205ENST00000476395 MCCP23508 829 aa9.95□□□□□ -0.82
VAPB-205ENST00000476395 LRP10Q7Z4F1 713 aa9.95□□□□□ -0.82
VAPB-205ENST00000476395 FAM227BQ96M60 508 aa9.95□□□□□ -0.82
VAPB-205ENST00000476395 FEZ1Q99689 392 aa9.95□□□□□ -0.82
VAPB-205ENST00000476395 COL18A1P39060 1754 aa9.95□□□□□ -0.82
VAPB-205ENST00000476395 ZNF142P52746 1687 aaPredicted RBP9.95□□□□□ -0.82
VAPB-205ENST00000476395 TJP1Q07157 1748 aa9.95□□□□□ -0.82
VAPB-205ENST00000476395 EIF2S2P20042 333 aaKnown RBP9.95□□□□□ -0.82
VAPB-205ENST00000476395 DNM1Q05193 864 aaKnown RBP9.95□□□□□ -0.82
VAPB-205ENST00000476395 CWF19L2Q2TBE0 894 aaKnown RBP9.95□□□□□ -0.82
VAPB-205ENST00000476395 ABTB2Q8N961 1025 aa9.95□□□□□ -0.82
VAPB-205ENST00000476395 DDX54Q8TDD1 881 aaKnown RBP9.95□□□□□ -0.82
VAPB-205ENST00000476395 TMX1Q9H3N1 280 aa9.95□□□□□ -0.82
VAPB-205ENST00000476395 ALS2Q96Q42 1657 aa9.95□□□□□ -0.82
VAPB-205ENST00000476395 CASTP20810 708 aaKnown RBP9.95□□□□□ -0.82
VAPB-205ENST00000476395 HDAC5Q9UQL6 1122 aa9.95□□□□□ -0.82
VAPB-205ENST00000476395 GIGYF1O75420 1035 aaPredicted RBP9.94□□□□□ -0.82
VAPB-205ENST00000476395 CCDC183Q5T5S1 534 aa9.94□□□□□ -0.82
VAPB-205ENST00000476395 SYTL4Q96C24 671 aaPredicted RBP9.94□□□□□ -0.82
VAPB-205ENST00000476395 EAF2Q96CJ1 260 aaPredicted RBP9.94□□□□□ -0.82
VAPB-205ENST00000476395 USP27XA6NNY8 438 aa9.94□□□□□ -0.82
VAPB-205ENST00000476395 GJB2P29033 226 aa9.94□□□□□ -0.82
VAPB-205ENST00000476395 ARID5BQ14865 1188 aa9.94□□□□□ -0.82
VAPB-205ENST00000476395 VPS53Q5VIR6 699 aa9.94□□□□□ -0.82
VAPB-205ENST00000476395 CCDC186Q7Z3E2 898 aa9.94□□□□□ -0.82
VAPB-205ENST00000476395 TIGD1Q96MW7 591 aa9.94□□□□□ -0.82
VAPB-205ENST00000476395 IGKV5-2P06315 115 aa9.94□□□□□ -0.82
VAPB-205ENST00000476395 UBE2HP62256 183 aa9.94□□□□□ -0.82
VAPB-205ENST00000476395 TOB2Q14106 344 aaPredicted RBP9.94□□□□□ -0.82
VAPB-205ENST00000476395 TAF3Q5VWG9 929 aa9.94□□□□□ -0.82
VAPB-205ENST00000476395 LUZP1Q86V48 1076 aa9.94□□□□□ -0.82
VAPB-205ENST00000476395 CCDC83Q8IWF9 413 aa9.94□□□□□ -0.82
VAPB-205ENST00000476395 MAP4K1Q92918 833 aa9.94□□□□□ -0.82
VAPB-205ENST00000476395 SYAP1Q96A49 352 aaPredicted RBP9.94□□□□□ -0.82
VAPB-205ENST00000476395 SUCLG2Q96I99 432 aa9.94□□□□□ -0.82
VAPB-205ENST00000476395 NWD2Q9ULI1 1742 aa9.94□□□□□ -0.82
VAPB-205ENST00000476395 NUP188Q5SRE5 1749 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 A0A0D9SFI3 127 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 TNNT1P13805 278 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 HSPA2P54652 639 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 RBM6P78332 1123 aaKnown RBP9.93□□□□□ -0.82
VAPB-205ENST00000476395 GABPB1Q06547 395 aaPredicted RBP9.93□□□□□ -0.82
VAPB-205ENST00000476395 CAMK4Q16566 473 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 PRPF40BQ6NWY9 871 aaKnown RBP9.93□□□□□ -0.82
VAPB-205ENST00000476395 MPRIPQ6WCQ1 1025 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 RGS22Q8NE09 1264 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 TM6SF1Q9BZW5 370 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 AXIN2Q9Y2T1 843 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 ADGRL3Q9HAR2 1447 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 EPHA10Q5JZY3 1008 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 TTC6Q86TZ1 520 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 ZNF589Q86UQ0 364 aaPredicted RBP9.93□□□□□ -0.82
VAPB-205ENST00000476395 CNTROBQ8N137 903 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 NECAB1Q8N987 351 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 GTF3C6Q969F1 213 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 MAP3K2Q9Y2U5 619 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 CCDC171Q6TFL3 1326 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 KDM6AO15550 1401 aaPredicted RBP9.93□□□□□ -0.82
VAPB-205ENST00000476395 UVSSAQ2YD98 709 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 FAM173BQ6P4H8 233 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 FBXO38Q6PIJ6 1188 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 CDC37L1Q7L3B6 337 aa9.93□□□□□ -0.82
VAPB-205ENST00000476395 ZNF215Q9UL58 517 aaPredicted RBP9.93□□□□□ -0.82
VAPB-205ENST00000476395 MORC2Q9Y6X9 1032 aaPredicted RBP9.93□□□□□ -0.82
VAPB-205ENST00000476395 RNMTO43148 476 aaKnown RBP9.92□□□□□ -0.82
VAPB-205ENST00000476395 LRRN4CLQ8ND94 238 aa9.92□□□□□ -0.82
VAPB-205ENST00000476395 ELF2Q15723 593 aa9.92□□□□□ -0.82
VAPB-205ENST00000476395 PIAS4Q8N2W9 510 aaPredicted RBP9.92□□□□□ -0.82
VAPB-205ENST00000476395 ZNF446Q9NWS9 450 aa9.92□□□□□ -0.82
VAPB-205ENST00000476395 GLRX3O76003 335 aaKnown RBP9.91□□□□□ -0.82
VAPB-205ENST00000476395 HNRNPH2P55795 449 aaKnown RBP9.91□□□□□ -0.82
VAPB-205ENST00000476395 NMIQ13287 307 aaPredicted RBP9.91□□□□□ -0.82
VAPB-205ENST00000476395 AKAP4Q5JQC9 854 aa9.91□□□□□ -0.82
VAPB-205ENST00000476395 CREB3L3Q68CJ9 461 aa9.91□□□□□ -0.82
VAPB-205ENST00000476395 KLHDC4Q8TBB5 520 aa9.91□□□□□ -0.82
VAPB-205ENST00000476395 ECHDC1Q9NTX5 307 aa9.91□□□□□ -0.82
VAPB-205ENST00000476395 SLC27A2O14975 620 aa9.91□□□□□ -0.82
VAPB-205ENST00000476395 LIG1P18858 919 aa9.91□□□□□ -0.82
VAPB-205ENST00000476395 GPATCH11Q8N954 259 aa9.91□□□□□ -0.82
VAPB-205ENST00000476395 FAM184AQ8NB25 1140 aa9.91□□□□□ -0.82
VAPB-205ENST00000476395 ZNF622Q969S3 477 aaKnown RBP eCLIP9.91□□□□□ -0.821e-11■□□□□ 9.6
VAPB-205ENST00000476395 JAKMIP1Q96N16 626 aaKnown RBP9.91□□□□□ -0.82
VAPB-205ENST00000476395 BICC1Q9H694 974 aaKnown RBP9.91□□□□□ -0.82
VAPB-205ENST00000476395 BTBD11A6QL63 1104 aa9.91□□□□□ -0.82
VAPB-205ENST00000476395 PHF14O94880 888 aa9.91□□□□□ -0.82
VAPB-205ENST00000476395 RBM43Q6ZSC3 357 aaKnown RBP9.91□□□□□ -0.82
VAPB-205ENST00000476395 RBM8AQ9Y5S9 174 aaKnown RBP9.91□□□□□ -0.82
VAPB-205ENST00000476395 PKD1L3Q7Z443 1732 aa9.91□□□□□ -0.82
VAPB-205ENST00000476395 ERBB3P21860 1342 aa9.9□□□□□ -0.82
VAPB-205ENST00000476395 RFX5P48382 616 aaPredicted RBP9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms