RNA–Protein interactions for RNA: ENST00000475639.5

U2AF1-209, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 4,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-209ENST00000475639 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.27□□□□□ -0.28
U2AF1-209ENST00000475639 CCDC171Q6TFL3 1326 aa13.27□□□□□ -0.29
U2AF1-209ENST00000475639 GCOM1H8Y6P7 765 aaPredicted RBP13.27□□□□□ -0.29
U2AF1-209ENST00000475639 MYZAPP0CAP1 466 aa13.27□□□□□ -0.29
U2AF1-209ENST00000475639 SFPQP23246 707 aaKnown RBP eCLIP13.27□□□□□ -0.29
U2AF1-209ENST00000475639 SPA17Q15506 151 aa13.27□□□□□ -0.29
U2AF1-209ENST00000475639 DDX23Q9BUQ8 820 aaKnown RBP13.27□□□□□ -0.29
U2AF1-209ENST00000475639 ATG3Q9NT62 314 aa13.27□□□□□ -0.29
U2AF1-209ENST00000475639 EXOC6BQ9Y2D4 811 aa13.27□□□□□ -0.29
U2AF1-209ENST00000475639 ARID5BQ14865 1188 aa13.27□□□□□ -0.29
U2AF1-209ENST00000475639 CFAP100Q494V2 611 aa13.27□□□□□ -0.29
U2AF1-209ENST00000475639 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.27□□□□□ -0.29
U2AF1-209ENST00000475639 BCCIPQ9P287 314 aaKnown RBP eCLIP13.27□□□□□ -0.29
U2AF1-209ENST00000475639 MAP3K4Q9Y6R4 1608 aa13.27□□□□□ -0.29
U2AF1-209ENST00000475639 CDKL5O76039 1030 aa13.26□□□□□ -0.29
U2AF1-209ENST00000475639 DNM1Q05193 864 aaKnown RBP13.26□□□□□ -0.29
U2AF1-209ENST00000475639 CCDC158Q5M9N0 1113 aa13.26□□□□□ -0.29
U2AF1-209ENST00000475639 C6orf163Q5TEZ5 329 aa13.26□□□□□ -0.29
U2AF1-209ENST00000475639 CLIP2Q9UDT6 1046 aa13.26□□□□□ -0.29
U2AF1-209ENST00000475639 RAD50Q92878 1312 aa13.26□□□□□ -0.29
U2AF1-209ENST00000475639 CASQ1P31415 396 aa13.26□□□□□ -0.29
U2AF1-209ENST00000475639 LRRN4CLQ8ND94 238 aa13.26□□□□□ -0.29
U2AF1-209ENST00000475639 ARHGEF40Q8TER5 1519 aa13.26□□□□□ -0.29
U2AF1-209ENST00000475639 POLR3GO15318 223 aaPredicted RBP13.26□□□□□ -0.29
U2AF1-209ENST00000475639 ZSCAN12O43309 604 aa13.26□□□□□ -0.29
U2AF1-209ENST00000475639 UBE4AQ14139 1066 aa13.26□□□□□ -0.29
U2AF1-209ENST00000475639 ICE2Q659A1 982 aa13.26□□□□□ -0.29
U2AF1-209ENST00000475639 LRRC8AQ8IWT6 810 aa13.26□□□□□ -0.29
U2AF1-209ENST00000475639 NUP62CLQ9H1M0 184 aa13.26□□□□□ -0.29
U2AF1-209ENST00000475639 CAMK4Q16566 473 aa13.25□□□□□ -0.29
U2AF1-209ENST00000475639 FBF1Q8TES7 1133 aa13.25□□□□□ -0.29
U2AF1-209ENST00000475639 KIF4BQ2VIQ3 1234 aa13.25□□□□□ -0.29
U2AF1-209ENST00000475639 ANO6Q4KMQ2 910 aa13.25□□□□□ -0.29
U2AF1-209ENST00000475639 SPECC1LQ69YQ0 1117 aa13.25□□□□□ -0.29
U2AF1-209ENST00000475639 MINK1Q8N4C8 1332 aaPredicted RBP13.25□□□□□ -0.29
U2AF1-209ENST00000475639 RNF187Q5TA31 235 aaPredicted RBP13.25□□□□□ -0.29
U2AF1-209ENST00000475639 CEP85Q6P2H3 762 aa13.25□□□□□ -0.29
U2AF1-209ENST00000475639 PPM1FP49593 454 aaPredicted RBP13.24□□□□□ -0.29
U2AF1-209ENST00000475639 MAP3K11Q16584 847 aa13.24□□□□□ -0.29
U2AF1-209ENST00000475639 AATKQ6ZMQ8 1374 aa13.24□□□□□ -0.29
U2AF1-209ENST00000475639 MPHOSPH10O00566 681 aaKnown RBP13.24□□□□□ -0.29
U2AF1-209ENST00000475639 ZRANB2O95218 330 aaKnown RBP eCLIP13.24□□□□□ -0.29
U2AF1-209ENST00000475639 TSHZ3Q63HK5 1081 aa13.24□□□□□ -0.29
U2AF1-209ENST00000475639 SMARCC1Q92922 1105 aaPredicted RBP13.24□□□□□ -0.29
U2AF1-209ENST00000475639 IL17RAQ96F46 866 aa13.24□□□□□ -0.29
U2AF1-209ENST00000475639 THUMPD2Q9BTF0 503 aaKnown RBP13.24□□□□□ -0.29
U2AF1-209ENST00000475639 NLRP2Q9NX02 1062 aa13.24□□□□□ -0.29
U2AF1-209ENST00000475639 TRMT1Q9NXH9 659 aaKnown RBP13.24□□□□□ -0.29
U2AF1-209ENST00000475639 PDE1AP54750 535 aa13.24□□□□□ -0.29
U2AF1-209ENST00000475639 ZSCAN26Q16670 478 aa13.24□□□□□ -0.29
U2AF1-209ENST00000475639 SPATA32Q96LK8 384 aa13.24□□□□□ -0.29
U2AF1-209ENST00000475639 TAOK3Q9H2K8 898 aa13.24□□□□□ -0.29
U2AF1-209ENST00000475639 COMMD10Q9Y6G5 202 aa13.24□□□□□ -0.29
U2AF1-209ENST00000475639 CARMIL2Q6F5E8 1435 aa13.24□□□□□ -0.29
U2AF1-209ENST00000475639 CCDC69A6NI79 296 aa13.24□□□□□ -0.29
U2AF1-209ENST00000475639 BLOC1S2Q6QNY1 142 aa13.24□□□□□ -0.29
U2AF1-209ENST00000475639 CKAP2LQ8IYA6 745 aa13.24□□□□□ -0.29
U2AF1-209ENST00000475639 OSBPL3Q9H4L5 887 aa13.23□□□□□ -0.29
U2AF1-209ENST00000475639 HOMER2Q9NSB8 354 aa13.23□□□□□ -0.29
U2AF1-209ENST00000475639 NSD2O96028 1365 aa13.23□□□□□ -0.29
U2AF1-209ENST00000475639 KIF5CO60282 957 aa13.23□□□□□ -0.29
U2AF1-209ENST00000475639 CTR9Q6PD62 1173 aa13.23□□□□□ -0.29
U2AF1-209ENST00000475639 LARP1Q6PKG0 1096 aaKnown RBP13.23□□□□□ -0.29
U2AF1-209ENST00000475639 DTNBO60941 627 aa13.23□□□□□ -0.29
U2AF1-209ENST00000475639 CCDC30Q5VVM6 783 aa13.23□□□□□ -0.29
U2AF1-209ENST00000475639 TDRD7Q8NHU6 1098 aaKnown RBP13.23□□□□□ -0.29
U2AF1-209ENST00000475639 PPP6R1Q9UPN7 881 aa13.23□□□□□ -0.29
U2AF1-209ENST00000475639 ZC3H13Q5T200 1668 aaKnown RBP13.23□□□□□ -0.29
U2AF1-209ENST00000475639 FAM135BQ49AJ0 1406 aa13.23□□□□□ -0.29
U2AF1-209ENST00000475639 URI1O94763 535 aaPredicted RBP13.22□□□□□ -0.29
U2AF1-209ENST00000475639 PRR29P0C7W0 189 aa13.22□□□□□ -0.29
U2AF1-209ENST00000475639 LIG1P18858 919 aa13.22□□□□□ -0.29
U2AF1-209ENST00000475639 CCDC83Q8IWF9 413 aa13.22□□□□□ -0.29
U2AF1-209ENST00000475639 LARP6Q9BRS8 491 aaKnown RBP13.22□□□□□ -0.29
U2AF1-209ENST00000475639 ZCCHC17Q9NP64 241 aaKnown RBP13.22□□□□□ -0.29
U2AF1-209ENST00000475639 SKILP12757 684 aa13.22□□□□□ -0.29
U2AF1-209ENST00000475639 BRD2P25440 801 aaKnown RBP13.22□□□□□ -0.29
U2AF1-209ENST00000475639 RPAP2Q8IXW5 612 aaPredicted RBP13.22□□□□□ -0.29
U2AF1-209ENST00000475639 NUP133Q8WUM0 1156 aa13.22□□□□□ -0.29
U2AF1-209ENST00000475639 L2HGDHQ9H9P8 463 aa13.22□□□□□ -0.29
U2AF1-209ENST00000475639 KIF24Q5T7B8 1368 aa13.22□□□□□ -0.29
U2AF1-209ENST00000475639 MYCNP04198 464 aaPredicted RBP13.22□□□□□ -0.29
U2AF1-209ENST00000475639 GIGYF2Q6Y7W6 1299 aaKnown RBP13.22□□□□□ -0.29
U2AF1-209ENST00000475639 SRLQ86TD4 932 aa13.22□□□□□ -0.29
U2AF1-209ENST00000475639 FERP16591 822 aa13.21□□□□□ -0.29
U2AF1-209ENST00000475639 MATR3P43243 847 aaKnown RBP eCLIP13.21□□□□□ -0.29
U2AF1-209ENST00000475639 KRT24Q2M2I5 525 aa13.21□□□□□ -0.29
U2AF1-209ENST00000475639 ZSCAN31Q96LW9 406 aaPredicted RBP13.21□□□□□ -0.29
U2AF1-209ENST00000475639 CNNM1Q9NRU3 951 aa13.21□□□□□ -0.29
U2AF1-209ENST00000475639 QRICH2Q9H0J4 1663 aa13.21□□□□□ -0.29
U2AF1-209ENST00000475639 MACROD2A1Z1Q3 448 aa13.21□□□□□ -0.29
U2AF1-209ENST00000475639 ZNF76P36508 570 aa13.21□□□□□ -0.29
U2AF1-209ENST00000475639 NCAPGQ9BPX3 1015 aa13.21□□□□□ -0.29
U2AF1-209ENST00000475639 NAA15Q9BXJ9 866 aaKnown RBP13.21□□□□□ -0.29
U2AF1-209ENST00000475639 UBXN6Q9BZV1 441 aa13.21□□□□□ -0.29
U2AF1-209ENST00000475639 CACNA2D4Q7Z3S7 1137 aa13.21□□□□□ -0.3
U2AF1-209ENST00000475639 TUBGCP6Q96RT7 1819 aa13.21□□□□□ -0.3
U2AF1-209ENST00000475639 USO1O60763 962 aaKnown RBP13.21□□□□□ -0.3
U2AF1-209ENST00000475639 CCZ1BP86790 482 aa13.21□□□□□ -0.3
U2AF1-209ENST00000475639 CCZ1P86791 482 aaPredicted RBP13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms