RNA–Protein interactions for RNA: ENST00000475470.1

RPUSD3-215, Transcript of RNA pseudouridylate synthase domain containing 3, humanhuman

TSL 2

Gene RPUSD3, Length 2,413 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3-215ENST00000475470 CSF1RP07333 972 aa18.53■□□□□ 0.56
RPUSD3-215ENST00000475470 TIMM10P62072 90 aa18.53■□□□□ 0.56
RPUSD3-215ENST00000475470 IFIT5Q13325 482 aaKnown RBP18.53■□□□□ 0.56
RPUSD3-215ENST00000475470 GBP4Q96PP9 640 aa18.53■□□□□ 0.56
RPUSD3-215ENST00000475470 DNAJC2Q99543 621 aaKnown RBP18.53■□□□□ 0.56
RPUSD3-215ENST00000475470 HAUS7Q99871 368 aa18.53■□□□□ 0.56
RPUSD3-215ENST00000475470 PUS3Q9BZE2 481 aaKnown RBP18.53■□□□□ 0.56
RPUSD3-215ENST00000475470 CEP126Q9P2H0 1117 aa18.53■□□□□ 0.56
RPUSD3-215ENST00000475470 TRMT112Q9UI30 125 aaKnown RBP18.53■□□□□ 0.56
RPUSD3-215ENST00000475470 FBXO3Q9UK99 471 aa18.53■□□□□ 0.56
RPUSD3-215ENST00000475470 CCDC171Q6TFL3 1326 aa18.53■□□□□ 0.56
RPUSD3-215ENST00000475470 CRKLP46109 303 aaKnown RBP18.52■□□□□ 0.56
RPUSD3-215ENST00000475470 INTS5Q6P9B9 1019 aaKnown RBP18.52■□□□□ 0.56
RPUSD3-215ENST00000475470 RASEFQ8IZ41 740 aa18.52■□□□□ 0.56
RPUSD3-215ENST00000475470 SYNE4Q8N205 404 aa18.52■□□□□ 0.56
RPUSD3-215ENST00000475470 ANKRD36CQ5JPF3 1778 aa18.52■□□□□ 0.56
RPUSD3-215ENST00000475470 A0A0D9SFI3 127 aa18.52■□□□□ 0.55
RPUSD3-215ENST00000475470 DDX11L8A8MPP1 907 aa18.52■□□□□ 0.55
RPUSD3-215ENST00000475470 EIF5P55010 431 aaKnown RBP18.52■□□□□ 0.55
RPUSD3-215ENST00000475470 VPS72Q15906 364 aa18.52■□□□□ 0.55
RPUSD3-215ENST00000475470 NOL8Q76FK4 1167 aaKnown RBP18.52■□□□□ 0.55
RPUSD3-215ENST00000475470 SNRKQ9NRH2 765 aa18.52■□□□□ 0.55
RPUSD3-215ENST00000475470 NDUFB9Q9Y6M9 179 aa18.52■□□□□ 0.55
RPUSD3-215ENST00000475470 NUP98P52948 1817 aa18.52■□□□□ 0.55
RPUSD3-215ENST00000475470 KCNJ4P48050 445 aa18.51■□□□□ 0.55
RPUSD3-215ENST00000475470 NUCB2P80303 420 aa18.51■□□□□ 0.55
RPUSD3-215ENST00000475470 PRPF40BQ6NWY9 871 aaKnown RBP18.51■□□□□ 0.55
RPUSD3-215ENST00000475470 ZGPATQ8N5A5 531 aaKnown RBP18.51■□□□□ 0.55
RPUSD3-215ENST00000475470 SMARCC1Q92922 1105 aaPredicted RBP18.51■□□□□ 0.55
RPUSD3-215ENST00000475470 PALLDQ8WX93 1383 aa18.51■□□□□ 0.55
RPUSD3-215ENST00000475470 A0A1B0GUL7 405 aa18.5■□□□□ 0.55
RPUSD3-215ENST00000475470 IRS4O14654 1257 aaPredicted RBP18.5■□□□□ 0.55
RPUSD3-215ENST00000475470 ZNF609O15014 1411 aa18.5■□□□□ 0.55
RPUSD3-215ENST00000475470 SSFA2P28290 1259 aa18.5■□□□□ 0.55
RPUSD3-215ENST00000475470 BCL9LQ86UU0 1499 aa18.5■□□□□ 0.55
RPUSD3-215ENST00000475470 KCNQ2O43526 872 aa18.5■□□□□ 0.55
RPUSD3-215ENST00000475470 ITPK1Q13572 414 aa18.5■□□□□ 0.55
RPUSD3-215ENST00000475470 MAP4K1Q92918 833 aa18.5■□□□□ 0.55
RPUSD3-215ENST00000475470 AKAP2Q9Y2D5 859 aa18.5■□□□□ 0.55
RPUSD3-215ENST00000475470 ZKSCAN1P17029 563 aaPredicted RBP18.49■□□□□ 0.55
RPUSD3-215ENST00000475470 CTSWP56202 376 aa18.49■□□□□ 0.55
RPUSD3-215ENST00000475470 ZNF34Q8IZ26 560 aa18.49■□□□□ 0.55
RPUSD3-215ENST00000475470 TTLL11Q8NHH1 800 aa18.49■□□□□ 0.55
RPUSD3-215ENST00000475470 RBM8AQ9Y5S9 174 aaKnown RBP18.49■□□□□ 0.55
RPUSD3-215ENST00000475470 RFX7Q2KHR2 1363 aa18.49■□□□□ 0.55
RPUSD3-215ENST00000475470 NECTIN1Q15223 517 aa18.49■□□□□ 0.55
RPUSD3-215ENST00000475470 DDX46Q7L014 1031 aaKnown RBP18.49■□□□□ 0.55
RPUSD3-215ENST00000475470 MED23Q9ULK4 1368 aa18.48■□□□□ 0.55
RPUSD3-215ENST00000475470 ITGA6P23229 1130 aa18.48■□□□□ 0.55
RPUSD3-215ENST00000475470 CUL4AQ13619 759 aa18.48■□□□□ 0.55
RPUSD3-215ENST00000475470 KCNB2Q92953 911 aa18.48■□□□□ 0.55
RPUSD3-215ENST00000475470 UBN2Q6ZU65 1347 aa18.48■□□□□ 0.55
RPUSD3-215ENST00000475470 ANKRD18BA2A2Z9 1011 aa18.48■□□□□ 0.55
RPUSD3-215ENST00000475470 PDE8AO60658 829 aa18.48■□□□□ 0.55
RPUSD3-215ENST00000475470 CASTP20810 708 aaKnown RBP18.48■□□□□ 0.55
RPUSD3-215ENST00000475470 GREM2Q9H772 168 aa18.48■□□□□ 0.55
RPUSD3-215ENST00000475470 KBTBD3Q8NAB2 608 aa18.47■□□□□ 0.55
RPUSD3-215ENST00000475470 PAG1Q9NWQ8 432 aa18.47■□□□□ 0.55
RPUSD3-215ENST00000475470 GOLIM4O00461 696 aa18.47■□□□□ 0.55
RPUSD3-215ENST00000475470 IFIT1P09914 478 aaKnown RBP18.47■□□□□ 0.55
RPUSD3-215ENST00000475470 GORABQ5T7V8 394 aa18.47■□□□□ 0.55
RPUSD3-215ENST00000475470 CREB3L3Q68CJ9 461 aa18.47■□□□□ 0.55
RPUSD3-215ENST00000475470 LDHAL6AQ6ZMR3 332 aa18.47■□□□□ 0.55
RPUSD3-215ENST00000475470 ZNF589Q86UQ0 364 aaPredicted RBP18.47■□□□□ 0.55
RPUSD3-215ENST00000475470 FNBP4Q8N3X1 1017 aaPredicted RBP18.47■□□□□ 0.55
RPUSD3-215ENST00000475470 JAKMIP1Q96N16 626 aaKnown RBP18.47■□□□□ 0.55
RPUSD3-215ENST00000475470 RNF20Q5VTR2 975 aa18.46■□□□□ 0.55
RPUSD3-215ENST00000475470 INTS4Q96HW7 963 aaKnown RBP18.46■□□□□ 0.55
RPUSD3-215ENST00000475470 TTC14Q96N46 770 aa18.46■□□□□ 0.55
RPUSD3-215ENST00000475470 TRAK2O60296 914 aa18.45■□□□□ 0.54
RPUSD3-215ENST00000475470 CCDC158Q5M9N0 1113 aa18.45■□□□□ 0.54
RPUSD3-215ENST00000475470 TM6SF1Q9BZW5 370 aa18.45■□□□□ 0.54
RPUSD3-215ENST00000475470 USP21Q9UK80 565 aa18.45■□□□□ 0.54
RPUSD3-215ENST00000475470 MYH3P11055 1940 aa18.45■□□□□ 0.54
RPUSD3-215ENST00000475470 ADCK5Q3MIX3 580 aa18.45■□□□□ 0.54
RPUSD3-215ENST00000475470 METTL24Q5JXM2 366 aa18.45■□□□□ 0.54
RPUSD3-215ENST00000475470 SPATA31A6Q5VVP1 1343 aa18.45■□□□□ 0.54
RPUSD3-215ENST00000475470 TAF5LO75529 589 aa18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 CYP2E1P05181 493 aaPredicted RBP18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 AK2P54819 239 aa18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 PKP1Q13835 747 aa18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 MCMDC2Q4G0Z9 681 aa18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 SUSD4Q5VX71 490 aa18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 XAGE2Q96GT9 111 aa18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 CNNM1Q9NRU3 951 aa18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 CYP46A1Q9Y6A2 500 aa18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 CICQ96RK0 1608 aaPredicted RBP18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 SLC27A2O14975 620 aa18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 CAMTA2O94983 1202 aa18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 CPA1P15085 419 aa18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 PTMSP20962 102 aa18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 TTC39AQ5SRH9 613 aa18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 CLEC17AQ6ZS10 378 aa18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 ZSWIM6Q9HCJ5 1215 aa18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 LIMCH1Q9UPQ0 1083 aa18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 RIPOR2Q9Y4F9 1068 aa18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 SH3TC1Q8TE82 1336 aa18.44■□□□□ 0.54
RPUSD3-215ENST00000475470 RREB1Q92766 1687 aa18.43■□□□□ 0.54
RPUSD3-215ENST00000475470 GOLGA6L22H0YM25 854 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms