RNA–Protein interactions for RNA: ENST00000475043.5

PDPN-204, Transcript of podoplanin, humanhuman

TSL 3 BASIC

Gene PDPN, Length 849 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-204ENST00000475043 PCDHB13Q9Y5F0 798 aa12.19□□□□□ -0.46
PDPN-204ENST00000475043 LAMB2P55268 1798 aa12.19□□□□□ -0.46
PDPN-204ENST00000475043 TCERG1O14776 1098 aaKnown RBP12.18□□□□□ -0.46
PDPN-204ENST00000475043 CCDC27Q2M243 656 aa12.18□□□□□ -0.46
PDPN-204ENST00000475043 NLRP10Q86W26 655 aa12.18□□□□□ -0.46
PDPN-204ENST00000475043 WWC1Q8IX03 1113 aa12.18□□□□□ -0.46
PDPN-204ENST00000475043 RTKN2Q8IZC4 609 aa12.18□□□□□ -0.46
PDPN-204ENST00000475043 C8orf58Q8NAV2 365 aa12.18□□□□□ -0.46
PDPN-204ENST00000475043 TSR2Q969E8 191 aaKnown RBP12.18□□□□□ -0.46
PDPN-204ENST00000475043 RBM17Q96I25 401 aaKnown RBP12.18□□□□□ -0.46
PDPN-204ENST00000475043 HSPA6P17066 643 aa12.17□□□□□ -0.46
PDPN-204ENST00000475043 HOXA10P31260 410 aaPredicted RBP12.17□□□□□ -0.46
PDPN-204ENST00000475043 FKBP4Q02790 459 aaKnown RBP eCLIP12.17□□□□□ -0.46
PDPN-204ENST00000475043 C3orf67Q6ZVT6 689 aa12.17□□□□□ -0.46
PDPN-204ENST00000475043 RIC3Q7Z5B4 369 aa12.17□□□□□ -0.46
PDPN-204ENST00000475043 FAM9BQ8IZU0 186 aa12.17□□□□□ -0.46
PDPN-204ENST00000475043 PHAXQ9H814 394 aaKnown RBP12.17□□□□□ -0.46
PDPN-204ENST00000475043 ZNF277Q9NRM2 450 aaPredicted RBP12.17□□□□□ -0.46
PDPN-204ENST00000475043 RNF123Q5XPI4 1314 aa12.16□□□□□ -0.46
PDPN-204ENST00000475043 SH3TC1Q8TE82 1336 aa12.16□□□□□ -0.46
PDPN-204ENST00000475043 ATP5J2-PTCD1G3V325 749 aa12.16□□□□□ -0.46
PDPN-204ENST00000475043 PPEF1O14829 653 aaPredicted RBP12.16□□□□□ -0.46
PDPN-204ENST00000475043 HCLS1P14317 486 aaPredicted RBP12.16□□□□□ -0.46
PDPN-204ENST00000475043 VEGFAP15692 232 aaPredicted RBP12.16□□□□□ -0.46
PDPN-204ENST00000475043 GOLGA2Q08379 1002 aa12.16□□□□□ -0.46
PDPN-204ENST00000475043 SLC10A5Q5PT55 438 aa12.16□□□□□ -0.46
PDPN-204ENST00000475043 CCDC30Q5VVM6 783 aa12.16□□□□□ -0.46
PDPN-204ENST00000475043 SYNE4Q8N205 404 aa12.16□□□□□ -0.46
PDPN-204ENST00000475043 CRAMP1Q96RY5 1269 aa12.16□□□□□ -0.46
PDPN-204ENST00000475043 CHMP4AQ9BY43 222 aa12.16□□□□□ -0.46
PDPN-204ENST00000475043 DDX60Q8IY21 1712 aaKnown RBP12.15□□□□□ -0.46
PDPN-204ENST00000475043 RTL5Q5HYW3 569 aaPredicted RBP12.15□□□□□ -0.46
PDPN-204ENST00000475043 DCAF8Q5TAQ9 597 aa12.15□□□□□ -0.46
PDPN-204ENST00000475043 TSPYL6Q8N831 410 aa12.15□□□□□ -0.46
PDPN-204ENST00000475043 RBM46Q8TBY0 533 aaKnown RBP12.15□□□□□ -0.46
PDPN-204ENST00000475043 TMX4Q9H1E5 349 aaPredicted RBP12.15□□□□□ -0.46
PDPN-204ENST00000475043 WDR90Q96KV7 1748 aa12.14□□□□□ -0.47
PDPN-204ENST00000475043 DDNO94850 711 aaPredicted RBP12.14□□□□□ -0.47
PDPN-204ENST00000475043 IARSP41252 1262 aaKnown RBP12.14□□□□□ -0.47
PDPN-204ENST00000475043 CC2D2BQ6DHV5 1058 aa12.14□□□□□ -0.47
PDPN-204ENST00000475043 FAM89AQ96GI7 184 aa12.14□□□□□ -0.47
PDPN-204ENST00000475043 ISCA1Q9BUE6 129 aa12.14□□□□□ -0.47
PDPN-204ENST00000475043 STK31Q9BXU1 1019 aa12.14□□□□□ -0.47
PDPN-204ENST00000475043 TAF1P21675 1872 aa12.14□□□□□ -0.47
PDPN-204ENST00000475043 ABCC4O15439 1325 aa12.13□□□□□ -0.47
PDPN-204ENST00000475043 IL16Q14005 1332 aa12.13□□□□□ -0.47
PDPN-204ENST00000475043 TTLL13PA6NNM8 815 aa12.13□□□□□ -0.47
PDPN-204ENST00000475043 DDX58O95786 925 aaKnown RBP12.13□□□□□ -0.47
PDPN-204ENST00000475043 TWISTNBQ3B726 338 aaPredicted RBP12.13□□□□□ -0.47
PDPN-204ENST00000475043 DDX46Q7L014 1031 aaKnown RBP12.13□□□□□ -0.47
PDPN-204ENST00000475043 IFNL1Q8IU54 200 aa12.13□□□□□ -0.47
PDPN-204ENST00000475043 OTUD5Q96G74 571 aa12.13□□□□□ -0.47
PDPN-204ENST00000475043 PSMD1Q99460 953 aa12.13□□□□□ -0.47
PDPN-204ENST00000475043 MYD88Q99836 296 aa12.13□□□□□ -0.47
PDPN-204ENST00000475043 FSTL1Q12841 308 aa12.12□□□□□ -0.47
PDPN-204ENST00000475043 GRIPAP1Q4V328 841 aa12.12□□□□□ -0.47
PDPN-204ENST00000475043 SLC51AQ86UW1 340 aa12.12□□□□□ -0.47
PDPN-204ENST00000475043 JDP2Q8WYK2 163 aa12.12□□□□□ -0.47
PDPN-204ENST00000475043 FANCIQ9NVI1 1328 aa12.11□□□□□ -0.47
PDPN-204ENST00000475043 SNED1Q8TER0 1413 aa12.11□□□□□ -0.47
PDPN-204ENST00000475043 POTECB2RU33 542 aa12.11□□□□□ -0.47
PDPN-204ENST00000475043 BBOX1O75936 387 aa12.11□□□□□ -0.47
PDPN-204ENST00000475043 APLP1P51693 650 aa12.11□□□□□ -0.47
PDPN-204ENST00000475043 WDR63Q8IWG1 891 aa12.11□□□□□ -0.47
PDPN-204ENST00000475043 SMC1BQ8NDV3 1235 aa12.11□□□□□ -0.47
PDPN-204ENST00000475043 ATP6V0A2Q9Y487 856 aa12.11□□□□□ -0.47
PDPN-204ENST00000475043 ZNF541Q9H0D2 1346 aa12.11□□□□□ -0.47
PDPN-204ENST00000475043 SCN4AP35499 1836 aa12.1□□□□□ -0.47
PDPN-204ENST00000475043 IRS4O14654 1257 aaPredicted RBP12.1□□□□□ -0.47
PDPN-204ENST00000475043 TRIM28Q13263 835 aaKnown RBP12.1□□□□□ -0.47
PDPN-204ENST00000475043 GRAPQ13588 217 aa12.1□□□□□ -0.47
PDPN-204ENST00000475043 LARGE2Q8N3Y3 721 aa12.1□□□□□ -0.47
PDPN-204ENST00000475043 GRAPLQ8TC17 118 aaPredicted RBP12.1□□□□□ -0.47
PDPN-204ENST00000475043 METTL22Q9BUU2 404 aaPredicted RBP12.1□□□□□ -0.47
PDPN-204ENST00000475043 MAP3K2Q9Y2U5 619 aa12.1□□□□□ -0.47
PDPN-204ENST00000475043 PI4KAP2A4QPH2 592 aa12.09□□□□□ -0.47
PDPN-204ENST00000475043 IQCA1LA6NCM1 817 aa12.09□□□□□ -0.47
PDPN-204ENST00000475043 PPIP5K2O43314 1243 aa12.09□□□□□ -0.47
PDPN-204ENST00000475043 DPP8Q6V1X1 898 aaPredicted RBP12.09□□□□□ -0.47
PDPN-204ENST00000475043 KSR2Q6VAB6 950 aa12.09□□□□□ -0.47
PDPN-204ENST00000475043 SP8Q8IXZ3 490 aa12.09□□□□□ -0.47
PDPN-204ENST00000475043 PI4KAP1Q8N8J0 262 aa12.09□□□□□ -0.47
PDPN-204ENST00000475043 ZBTB38Q8NAP3 1195 aaPredicted RBP12.09□□□□□ -0.47
PDPN-204ENST00000475043 CCDC191Q8NCU4 936 aa12.09□□□□□ -0.47
PDPN-204ENST00000475043 CWC25Q9NXE8 425 aaPredicted RBP12.09□□□□□ -0.47
PDPN-204ENST00000475043 COL4A5P29400 1685 aa12.08□□□□□ -0.48
PDPN-204ENST00000475043 FZD9O00144 591 aa12.08□□□□□ -0.48
PDPN-204ENST00000475043 HSP90B1P14625 803 aaKnown RBP12.08□□□□□ -0.48
PDPN-204ENST00000475043 EIF6P56537 245 aaKnown RBP12.08□□□□□ -0.48
PDPN-204ENST00000475043 EXOSC9Q06265 439 aaKnown RBP12.08□□□□□ -0.48
PDPN-204ENST00000475043 NEXNQ0ZGT2 675 aa12.08□□□□□ -0.48
PDPN-204ENST00000475043 SF3B3Q15393 1217 aaKnown RBP12.08□□□□□ -0.48
PDPN-204ENST00000475043 AOC3Q16853 763 aa12.08□□□□□ -0.48
PDPN-204ENST00000475043 G2E3Q7L622 706 aa12.08□□□□□ -0.48
PDPN-204ENST00000475043 NIM1KQ8IY84 436 aa12.08□□□□□ -0.48
PDPN-204ENST00000475043 MPNDQ8N594 471 aa12.08□□□□□ -0.48
PDPN-204ENST00000475043 SUPT20HQ8NEM7 779 aa12.08□□□□□ -0.48
PDPN-204ENST00000475043 JARID2Q92833 1246 aaPredicted RBP12.08□□□□□ -0.48
PDPN-204ENST00000475043 GJA3Q9Y6H8 435 aa12.08□□□□□ -0.48
PDPN-204ENST00000475043 CACNA1FO60840 1977 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms