RNA–Protein interactions for RNA: ENST00000474564.1

COL12A1-206, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 3

Gene COL12A1, Length 499 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-206ENST00000474564 TTLL11Q8NHH1 800 aa12.8□□□□□ -0.36
COL12A1-206ENST00000474564 MPHOSPH8Q99549 860 aa12.8□□□□□ -0.36
COL12A1-206ENST00000474564 MTFR1LQ9H019 292 aa12.8□□□□□ -0.36
COL12A1-206ENST00000474564 DCTPP1Q9H773 170 aa12.8□□□□□ -0.36
COL12A1-206ENST00000474564 PNMA6EA0A0J9YXQ4 647 aa12.79□□□□□ -0.36
COL12A1-206ENST00000474564 POLRMTO00411 1230 aaKnown RBP12.79□□□□□ -0.36
COL12A1-206ENST00000474564 IGHDP01880 384 aa12.79□□□□□ -0.36
COL12A1-206ENST00000474564 SF3B3Q15393 1217 aaKnown RBP12.79□□□□□ -0.36
COL12A1-206ENST00000474564 ANKRD45Q5TZF3 282 aa12.79□□□□□ -0.36
COL12A1-206ENST00000474564 RBM17Q96I25 401 aaKnown RBP12.79□□□□□ -0.36
COL12A1-206ENST00000474564 BRIP1Q9BX63 1249 aa12.79□□□□□ -0.36
COL12A1-206ENST00000474564 ITGA6P23229 1130 aa12.78□□□□□ -0.36
COL12A1-206ENST00000474564 PRR5LQ6MZQ0 368 aa12.78□□□□□ -0.36
COL12A1-206ENST00000474564 ANKRD18AQ8IVF6 992 aa12.78□□□□□ -0.36
COL12A1-206ENST00000474564 KIF1BPQ96EK5 621 aa12.78□□□□□ -0.36
COL12A1-206ENST00000474564 KAZALD1Q96I82 304 aa12.78□□□□□ -0.36
COL12A1-206ENST00000474564 LRRCC1Q9C099 1032 aa12.78□□□□□ -0.36
COL12A1-206ENST00000474564 COPRSQ9NQ92 184 aa12.78□□□□□ -0.36
COL12A1-206ENST00000474564 CNNM1Q9NRU3 951 aa12.78□□□□□ -0.36
COL12A1-206ENST00000474564 C4AP0C0L4 1744 aa12.78□□□□□ -0.36
COL12A1-206ENST00000474564 H0YIN7 160 aa12.77□□□□□ -0.37
COL12A1-206ENST00000474564 IL15P40933 162 aaPredicted RBP12.77□□□□□ -0.37
COL12A1-206ENST00000474564 EPHA10Q5JZY3 1008 aa12.77□□□□□ -0.37
COL12A1-206ENST00000474564 LDHAL6AQ6ZMR3 332 aa12.77□□□□□ -0.37
COL12A1-206ENST00000474564 SIRT2Q8IXJ6 389 aa12.77□□□□□ -0.37
COL12A1-206ENST00000474564 SMC5Q8IY18 1101 aa12.77□□□□□ -0.37
COL12A1-206ENST00000474564 SYNE4Q8N205 404 aa12.77□□□□□ -0.37
COL12A1-206ENST00000474564 CLASRPQ8N2M8 674 aaKnown RBP12.77□□□□□ -0.37
COL12A1-206ENST00000474564 CCDC85AQ96PX6 553 aaPredicted RBP12.77□□□□□ -0.37
COL12A1-206ENST00000474564 NOP58Q9Y2X3 529 aaKnown RBP12.77□□□□□ -0.37
COL12A1-206ENST00000474564 QSER1Q2KHR3 1735 aa12.76□□□□□ -0.37
COL12A1-206ENST00000474564 APBB1O00213 710 aa12.76□□□□□ -0.37
COL12A1-206ENST00000474564 CIAO1O76071 339 aa12.76□□□□□ -0.37
COL12A1-206ENST00000474564 ALDH1B1P30837 517 aa12.76□□□□□ -0.37
COL12A1-206ENST00000474564 DDR1Q08345 913 aa12.76□□□□□ -0.37
COL12A1-206ENST00000474564 FAM161AQ3B820 660 aa12.76□□□□□ -0.37
COL12A1-206ENST00000474564 GREM2Q9H772 168 aa12.76□□□□□ -0.37
COL12A1-206ENST00000474564 CEP126Q9P2H0 1117 aa12.76□□□□□ -0.37
COL12A1-206ENST00000474564 EXOC6BQ9Y2D4 811 aa12.76□□□□□ -0.37
COL12A1-206ENST00000474564 AKAP2Q9Y2D5 859 aa12.76□□□□□ -0.37
COL12A1-206ENST00000474564 RTL9Q8NET4 1388 aa12.76□□□□□ -0.37
COL12A1-206ENST00000474564 EYA2O00167 538 aa12.75□□□□□ -0.37
COL12A1-206ENST00000474564 ZBTB7AO95365 584 aa12.75□□□□□ -0.37
COL12A1-206ENST00000474564 RIC1Q4ADV7 1423 aa12.75□□□□□ -0.37
COL12A1-206ENST00000474564 TMC4Q7Z404 712 aa12.75□□□□□ -0.37
COL12A1-206ENST00000474564 CHD1LQ86WJ1 897 aa12.75□□□□□ -0.37
COL12A1-206ENST00000474564 GPATCH3Q96I76 525 aa12.75□□□□□ -0.37
COL12A1-206ENST00000474564 BCL11AQ9H165 835 aa12.75□□□□□ -0.37
COL12A1-206ENST00000474564 SIL1Q9H173 461 aa12.75□□□□□ -0.37
COL12A1-206ENST00000474564 MROH5Q6ZUA9 1318 aa12.74□□□□□ -0.37
COL12A1-206ENST00000474564 KDM2BQ8NHM5 1336 aa12.74□□□□□ -0.37
COL12A1-206ENST00000474564 PSDA5PKW4 1024 aaPredicted RBP12.74□□□□□ -0.37
COL12A1-206ENST00000474564 BBOX1O75936 387 aa12.74□□□□□ -0.37
COL12A1-206ENST00000474564 IFIT2P09913 472 aaKnown RBP12.74□□□□□ -0.37
COL12A1-206ENST00000474564 NPR1P16066 1061 aa12.74□□□□□ -0.37
COL12A1-206ENST00000474564 RPS8P62241 208 aaKnown RBP12.74□□□□□ -0.37
COL12A1-206ENST00000474564 NUCB1Q02818 461 aa12.74□□□□□ -0.37
COL12A1-206ENST00000474564 PTPN12Q05209 780 aaKnown RBP12.74□□□□□ -0.37
COL12A1-206ENST00000474564 CCDC24Q8N4L8 307 aa12.74□□□□□ -0.37
COL12A1-206ENST00000474564 RHPN1Q8TCX5 695 aa12.74□□□□□ -0.37
COL12A1-206ENST00000474564 SPON1Q9HCB6 807 aa12.74□□□□□ -0.37
COL12A1-206ENST00000474564 ATF5Q9Y2D1 282 aaPredicted RBP12.74□□□□□ -0.37
COL12A1-206ENST00000474564 METTL24Q5JXM2 366 aa12.73□□□□□ -0.37
COL12A1-206ENST00000474564 C2CD5Q86YS7 1000 aa12.73□□□□□ -0.37
COL12A1-206ENST00000474564 MASTLQ96GX5 879 aa12.73□□□□□ -0.37
COL12A1-206ENST00000474564 CRAMP1Q96RY5 1269 aa12.73□□□□□ -0.37
COL12A1-206ENST00000474564 ANKRD2Q9GZV1 360 aa12.73□□□□□ -0.37
COL12A1-206ENST00000474564 PA2G4Q9UQ80 394 aaKnown RBP12.73□□□□□ -0.37
COL12A1-206ENST00000474564 RFX5P48382 616 aaPredicted RBP12.72□□□□□ -0.37
COL12A1-206ENST00000474564 GRAPQ13588 217 aa12.72□□□□□ -0.37
COL12A1-206ENST00000474564 GORABQ5T7V8 394 aa12.72□□□□□ -0.37
COL12A1-206ENST00000474564 GRAPLQ8TC17 118 aaPredicted RBP12.72□□□□□ -0.37
COL12A1-206ENST00000474564 CNKSR1Q969H4 720 aa12.72□□□□□ -0.37
COL12A1-206ENST00000474564 ZNF622Q969S3 477 aaKnown RBP eCLIP12.72□□□□□ -0.37
COL12A1-206ENST00000474564 ZNF594Q96JF6 807 aaPredicted RBP12.72□□□□□ -0.37
COL12A1-206ENST00000474564 BSDC1Q9NW68 430 aaPredicted RBP12.72□□□□□ -0.37
COL12A1-206ENST00000474564 COL24A1Q17RW2 1714 aa12.71□□□□□ -0.37
COL12A1-206ENST00000474564 ABCC12Q96J65 1359 aa12.71□□□□□ -0.37
COL12A1-206ENST00000474564 KLRG2A4D1S0 409 aaPredicted RBP12.71□□□□□ -0.37
COL12A1-206ENST00000474564 HOXA10P31260 410 aaPredicted RBP12.71□□□□□ -0.37
COL12A1-206ENST00000474564 KCNJ4P48050 445 aa12.71□□□□□ -0.37
COL12A1-206ENST00000474564 CRY2Q49AN0 593 aa12.71□□□□□ -0.37
COL12A1-206ENST00000474564 STYK1Q6J9G0 422 aa12.71□□□□□ -0.37
COL12A1-206ENST00000474564 KLHDC4Q8TBB5 520 aa12.71□□□□□ -0.37
COL12A1-206ENST00000474564 LNPKQ9C0E8 428 aa12.71□□□□□ -0.37
COL12A1-206ENST00000474564 PPP1R1BQ9UD71 204 aaPredicted RBP12.71□□□□□ -0.37
COL12A1-206ENST00000474564 TUBGCP6Q96RT7 1819 aa12.7□□□□□ -0.38
COL12A1-206ENST00000474564 TGFB2P61812 414 aa12.7□□□□□ -0.38
COL12A1-206ENST00000474564 PDGFDQ9GZP0 370 aaPredicted RBP12.7□□□□□ -0.38
COL12A1-206ENST00000474564 GPR108Q9NPR9 543 aa12.7□□□□□ -0.38
COL12A1-206ENST00000474564 SEC31BQ9NQW1 1179 aa12.7□□□□□ -0.38
COL12A1-206ENST00000474564 ERC2O15083 957 aa12.69□□□□□ -0.38
COL12A1-206ENST00000474564 IFIT1P09914 478 aaKnown RBP12.69□□□□□ -0.38
COL12A1-206ENST00000474564 SRGNP10124 158 aa12.69□□□□□ -0.38
COL12A1-206ENST00000474564 RGS3P49796 1198 aa12.69□□□□□ -0.38
COL12A1-206ENST00000474564 TFCP2Q12800 502 aa12.69□□□□□ -0.38
COL12A1-206ENST00000474564 GRIPAP1Q4V328 841 aa12.69□□□□□ -0.38
COL12A1-206ENST00000474564 AACSQ86V21 672 aa12.69□□□□□ -0.38
COL12A1-206ENST00000474564 KLHL34Q8N239 644 aa12.69□□□□□ -0.38
COL12A1-206ENST00000474564 NEUROD6Q96NK8 337 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms