RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-204ENST00000474025 ECE1P42892 770 aa6.86□□□□□ -1.31
SNRNP40-204ENST00000474025 EIF6P56537 245 aaKnown RBP6.86□□□□□ -1.31
SNRNP40-204ENST00000474025 CST9Q5W186 159 aa6.86□□□□□ -1.31
SNRNP40-204ENST00000474025 CC2D2BQ6DHV5 1058 aa6.86□□□□□ -1.31
SNRNP40-204ENST00000474025 CYP4F22Q6NT55 531 aa6.86□□□□□ -1.31
SNRNP40-204ENST00000474025 NUTM1Q86Y26 1132 aa6.86□□□□□ -1.31
SNRNP40-204ENST00000474025 GPR101Q96P66 508 aaPredicted RBP6.86□□□□□ -1.31
SNRNP40-204ENST00000474025 TMEM106CQ9BVX2 250 aa6.86□□□□□ -1.31
SNRNP40-204ENST00000474025 NYXQ9GZU5 481 aa6.86□□□□□ -1.31
SNRNP40-204ENST00000474025 LAMB4A4D0S4 1761 aa6.86□□□□□ -1.31
SNRNP40-204ENST00000474025 UBN2Q6ZU65 1347 aa6.85□□□□□ -1.31
SNRNP40-204ENST00000474025 ERVV-1B6SEH8 477 aa6.85□□□□□ -1.31
SNRNP40-204ENST00000474025 SEC24BO95487 1268 aa6.85□□□□□ -1.31
SNRNP40-204ENST00000474025 CHRM1P11229 460 aaPredicted RBP6.85□□□□□ -1.31
SNRNP40-204ENST00000474025 GTF2E1P29083 439 aaPredicted RBP6.85□□□□□ -1.31
SNRNP40-204ENST00000474025 CNGB1Q14028 1251 aaPredicted RBP6.85□□□□□ -1.31
SNRNP40-204ENST00000474025 DCTN1Q14203 1278 aa6.85□□□□□ -1.31
SNRNP40-204ENST00000474025 GRIPAP1Q4V328 841 aa6.85□□□□□ -1.31
SNRNP40-204ENST00000474025 PAXIP1Q6ZW49 1069 aaPredicted RBP6.85□□□□□ -1.31
SNRNP40-204ENST00000474025 USP50Q70EL3 339 aaPredicted RBP6.85□□□□□ -1.31
SNRNP40-204ENST00000474025 LARGE2Q8N3Y3 721 aa6.85□□□□□ -1.31
SNRNP40-204ENST00000474025 RTF1Q92541 710 aaKnown RBP6.85□□□□□ -1.31
SNRNP40-204ENST00000474025 SCUBE2Q9NQ36 999 aa6.85□□□□□ -1.31
SNRNP40-204ENST00000474025 COLQQ9Y215 455 aaPredicted RBP6.85□□□□□ -1.31
SNRNP40-204ENST00000474025 TLL2Q9Y6L7 1015 aa6.85□□□□□ -1.31
SNRNP40-204ENST00000474025 PDE4DIPQ5VU43 2346 aa6.85□□□□□ -1.31
SNRNP40-204ENST00000474025 TRPM7Q96QT4 1865 aa6.85□□□□□ -1.31
SNRNP40-204ENST00000474025 MAP3K15Q6ZN16 1313 aa6.84□□□□□ -1.31
SNRNP40-204ENST00000474025 PPEF1O14829 653 aaPredicted RBP6.84□□□□□ -1.31
SNRNP40-204ENST00000474025 HTATSF1O43719 755 aaKnown RBP6.84□□□□□ -1.31
SNRNP40-204ENST00000474025 AOC2O75106 756 aa6.84□□□□□ -1.31
SNRNP40-204ENST00000474025 MAP2K2P36507 400 aa6.84□□□□□ -1.31
SNRNP40-204ENST00000474025 GRM1Q13255 1194 aa6.84□□□□□ -1.31
SNRNP40-204ENST00000474025 TTLL7Q6ZT98 887 aa6.84□□□□□ -1.31
SNRNP40-204ENST00000474025 C3orf67Q6ZVT6 689 aa6.84□□□□□ -1.31
SNRNP40-204ENST00000474025 NIM1KQ8IY84 436 aa6.84□□□□□ -1.31
SNRNP40-204ENST00000474025 RPGRQ92834 1020 aaKnown RBP6.84□□□□□ -1.31
SNRNP40-204ENST00000474025 CFAP53Q96M91 514 aa6.84□□□□□ -1.31
SNRNP40-204ENST00000474025 CRAMP1Q96RY5 1269 aa6.84□□□□□ -1.31
SNRNP40-204ENST00000474025 ADARB2Q9NS39 739 aaKnown RBP6.84□□□□□ -1.31
SNRNP40-204ENST00000474025 MIS18AQ9NYP9 233 aa6.84□□□□□ -1.31
SNRNP40-204ENST00000474025 TSKSQ9UJT2 592 aa6.84□□□□□ -1.31
SNRNP40-204ENST00000474025 NUP98P52948 1817 aa6.83□□□□□ -1.32
SNRNP40-204ENST00000474025 KDM3BQ7LBC6 1761 aa6.83□□□□□ -1.32
SNRNP40-204ENST00000474025 PPIP5K2O43314 1243 aa6.83□□□□□ -1.32
SNRNP40-204ENST00000474025 NTSR2O95665 410 aa6.83□□□□□ -1.32
SNRNP40-204ENST00000474025 U2AF1L5P0DN76 240 aaPredicted RBP6.83□□□□□ -1.32
SNRNP40-204ENST00000474025 GPTP24298 496 aa6.83□□□□□ -1.32
SNRNP40-204ENST00000474025 U2AF1Q01081 240 aaKnown RBP eCLIP6.83□□□□□ -1.32
SNRNP40-204ENST00000474025 TAF7Q15545 349 aaPredicted RBP6.83□□□□□ -1.32
SNRNP40-204ENST00000474025 AOC3Q16853 763 aa6.83□□□□□ -1.32
SNRNP40-204ENST00000474025 SUSD4Q5VX71 490 aa6.83□□□□□ -1.32
SNRNP40-204ENST00000474025 SAPCD2Q86UD0 394 aa6.83□□□□□ -1.32
SNRNP40-204ENST00000474025 NGEFQ8N5V2 710 aa6.83□□□□□ -1.32
SNRNP40-204ENST00000474025 GCC1Q96CN9 775 aa6.83□□□□□ -1.32
SNRNP40-204ENST00000474025 CFAP44Q96MT7 982 aa6.83□□□□□ -1.32
SNRNP40-204ENST00000474025 GPRC5DQ9NZD1 345 aa6.83□□□□□ -1.32
SNRNP40-204ENST00000474025 NUDCQ9Y266 331 aa6.83□□□□□ -1.32
SNRNP40-204ENST00000474025 TCERG1O14776 1098 aaKnown RBP6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 CELF2O95319 508 aaKnown RBP6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 BRPF1P55201 1214 aaPredicted RBP6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 EIF4A1P60842 406 aaKnown RBP6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 CXCL9Q07325 125 aa6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 KIF6Q6ZMV9 814 aa6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 ZNF467Q7Z7K2 595 aaPredicted RBP6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 IFNLR1Q8IU57 520 aaPredicted RBP6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 ZNF34Q8IZ26 560 aa6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 CCER1Q8TC90 406 aaPredicted RBP6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 RBM17Q96I25 401 aaKnown RBP6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 HHIPL1Q96JK4 782 aa6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 RTFDC1Q9BY42 306 aaPredicted RBP6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 GLIS2Q9BZE0 524 aaPredicted RBP6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 MCOLN1Q9GZU1 580 aa6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 VPS33BQ9H267 617 aa6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 ZBTB3Q9H5J0 574 aa6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 PGAP2Q9UHJ9 254 aa6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 RRP7AQ9Y3A4 280 aaKnown RBP6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 ATP6V0A2Q9Y487 856 aa6.82□□□□□ -1.32
SNRNP40-204ENST00000474025 ABCC4O15439 1325 aa6.81□□□□□ -1.32
SNRNP40-204ENST00000474025 CDHR2Q9BYE9 1310 aa6.81□□□□□ -1.32
SNRNP40-204ENST00000474025 MYL6BP14649 208 aa6.81□□□□□ -1.32
SNRNP40-204ENST00000474025 PPP2R1AP30153 589 aa6.81□□□□□ -1.32
SNRNP40-204ENST00000474025 GMPSP49915 693 aaPredicted RBP6.81□□□□□ -1.32
SNRNP40-204ENST00000474025 PRPF38BQ5VTL8 546 aaKnown RBP6.81□□□□□ -1.32
SNRNP40-204ENST00000474025 GIGYF2Q6Y7W6 1299 aaKnown RBP6.81□□□□□ -1.32
SNRNP40-204ENST00000474025 LRP10Q7Z4F1 713 aa6.81□□□□□ -1.32
SNRNP40-204ENST00000474025 TRPM4Q8TD43 1214 aa6.81□□□□□ -1.32
SNRNP40-204ENST00000474025 ZC3H15Q8WU90 426 aaKnown RBP6.81□□□□□ -1.32
SNRNP40-204ENST00000474025 SPOCK2Q92563 424 aa6.81□□□□□ -1.32
SNRNP40-204ENST00000474025 ZNRF3Q9ULT6 936 aa6.81□□□□□ -1.32
SNRNP40-204ENST00000474025 PCDHB8Q9UN66 801 aa6.81□□□□□ -1.32
SNRNP40-204ENST00000474025 CASP8AP2Q9UKL3 1982 aa6.8□□□□□ -1.32
SNRNP40-204ENST00000474025 RAD17O75943 681 aa6.8□□□□□ -1.32
SNRNP40-204ENST00000474025 HIRAP54198 1017 aaPredicted RBP6.8□□□□□ -1.32
SNRNP40-204ENST00000474025 IRX5P78411 483 aaPredicted RBP6.8□□□□□ -1.32
SNRNP40-204ENST00000474025 KIAA2012Q0VF49 1180 aa6.8□□□□□ -1.32
SNRNP40-204ENST00000474025 PARP10Q53GL7 1025 aa6.8□□□□□ -1.32
SNRNP40-204ENST00000474025 CIAPIN1Q6FI81 312 aa6.8□□□□□ -1.32
SNRNP40-204ENST00000474025 PPP1R42Q7Z4L9 355 aa6.8□□□□□ -1.32
SNRNP40-204ENST00000474025 PNISRQ8TF01 805 aaKnown RBP6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms