RNA–Protein interactions for RNA: ENST00000472789.1

SMARCD3-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 863 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-208ENST00000472789 PRPF40BQ6NWY9 871 aaKnown RBP13.29□□□□□ -0.28
SMARCD3-208ENST00000472789 ARHGAP27Q6ZUM4 889 aa13.29□□□□□ -0.28
SMARCD3-208ENST00000472789 DDX46Q7L014 1031 aaKnown RBP13.29□□□□□ -0.28
SMARCD3-208ENST00000472789 DZIP1LQ8IYY4 767 aaKnown RBP13.29□□□□□ -0.28
SMARCD3-208ENST00000472789 CLUAP1Q96AJ1 413 aa13.29□□□□□ -0.28
SMARCD3-208ENST00000472789 RIC1Q4ADV7 1423 aa13.29□□□□□ -0.28
SMARCD3-208ENST00000472789 COL11A2P13942 1736 aaPredicted RBP13.28□□□□□ -0.28
SMARCD3-208ENST00000472789 H7C1W4 665 aa13.28□□□□□ -0.28
SMARCD3-208ENST00000472789 C21orf2O43822 256 aa13.28□□□□□ -0.28
SMARCD3-208ENST00000472789 PDE8AO60658 829 aa13.28□□□□□ -0.28
SMARCD3-208ENST00000472789 CRY2Q49AN0 593 aa13.28□□□□□ -0.28
SMARCD3-208ENST00000472789 CDHR2Q9BYE9 1310 aa13.28□□□□□ -0.28
SMARCD3-208ENST00000472789 GRM8O00222 908 aa13.27□□□□□ -0.29
SMARCD3-208ENST00000472789 CCT4P50991 539 aaKnown RBP13.27□□□□□ -0.29
SMARCD3-208ENST00000472789 DNAJC5GQ8N7S2 189 aa13.27□□□□□ -0.29
SMARCD3-208ENST00000472789 PPP4R2Q9NY27 417 aa13.27□□□□□ -0.29
SMARCD3-208ENST00000472789 TRIM27P14373 513 aa13.26□□□□□ -0.29
SMARCD3-208ENST00000472789 CTSWP56202 376 aa13.26□□□□□ -0.29
SMARCD3-208ENST00000472789 CCDC152Q4G0S7 254 aa13.26□□□□□ -0.29
SMARCD3-208ENST00000472789 CRAMP1Q96RY5 1269 aa13.26□□□□□ -0.29
SMARCD3-208ENST00000472789 TMX4Q9H1E5 349 aaPredicted RBP13.26□□□□□ -0.29
SMARCD3-208ENST00000472789 TNNQ9UQP3 1299 aa13.26□□□□□ -0.29
SMARCD3-208ENST00000472789 CHMP3Q9Y3E7 222 aa13.26□□□□□ -0.29
SMARCD3-208ENST00000472789 DLEC1Q9Y238 1755 aa13.25□□□□□ -0.29
SMARCD3-208ENST00000472789 ABCC4O15439 1325 aa13.25□□□□□ -0.29
SMARCD3-208ENST00000472789 PPEF1O14829 653 aaPredicted RBP13.25□□□□□ -0.29
SMARCD3-208ENST00000472789 HOXA10P31260 410 aaPredicted RBP13.25□□□□□ -0.29
SMARCD3-208ENST00000472789 SF3B3Q15393 1217 aaKnown RBP13.25□□□□□ -0.29
SMARCD3-208ENST00000472789 DDX19BQ9UMR2 479 aa13.25□□□□□ -0.29
SMARCD3-208ENST00000472789 NBPF7P0C2Y1 421 aaPredicted RBP13.24□□□□□ -0.29
SMARCD3-208ENST00000472789 APLP1P51693 650 aa13.24□□□□□ -0.29
SMARCD3-208ENST00000472789 GRAPQ13588 217 aa13.24□□□□□ -0.29
SMARCD3-208ENST00000472789 OLFM4Q6UX06 510 aa13.24□□□□□ -0.29
SMARCD3-208ENST00000472789 GRAPLQ8TC17 118 aaPredicted RBP13.24□□□□□ -0.29
SMARCD3-208ENST00000472789 SEC31BQ9NQW1 1179 aa13.24□□□□□ -0.29
SMARCD3-208ENST00000472789 BRCA1P38398 1863 aaKnown RBP13.24□□□□□ -0.29
SMARCD3-208ENST00000472789 DDX60Q8IY21 1712 aaKnown RBP13.24□□□□□ -0.29
SMARCD3-208ENST00000472789 CACNA1SQ13698 1873 aa13.23□□□□□ -0.29
SMARCD3-208ENST00000472789 SLX4Q8IY92 1834 aa13.23□□□□□ -0.29
SMARCD3-208ENST00000472789 CASP7P55210 303 aa13.23□□□□□ -0.29
SMARCD3-208ENST00000472789 RASSF7Q02833 373 aa13.23□□□□□ -0.29
SMARCD3-208ENST00000472789 MVPQ14764 893 aaKnown RBP13.23□□□□□ -0.29
SMARCD3-208ENST00000472789 CCDC93Q567U6 631 aa13.23□□□□□ -0.29
SMARCD3-208ENST00000472789 SOGA3Q5TF21 947 aa13.23□□□□□ -0.29
SMARCD3-208ENST00000472789 TTLL11Q8NHH1 800 aa13.23□□□□□ -0.29
SMARCD3-208ENST00000472789 SUCLG2Q96I99 432 aa13.23□□□□□ -0.29
SMARCD3-208ENST00000472789 CRBNQ96SW2 442 aa13.23□□□□□ -0.29
SMARCD3-208ENST00000472789 BBOX1O75936 387 aa13.22□□□□□ -0.29
SMARCD3-208ENST00000472789 TOMM70O94826 608 aa13.22□□□□□ -0.29
SMARCD3-208ENST00000472789 UBTFL1P0CB47 393 aaPredicted RBP13.22□□□□□ -0.29
SMARCD3-208ENST00000472789 FAM161AQ3B820 660 aa13.22□□□□□ -0.29
SMARCD3-208ENST00000472789 C20orf194Q5TEA3 1177 aa13.22□□□□□ -0.29
SMARCD3-208ENST00000472789 ITPRIPQ8IWB1 547 aa13.22□□□□□ -0.29
SMARCD3-208ENST00000472789 EXOC6Q8TAG9 804 aa13.22□□□□□ -0.29
SMARCD3-208ENST00000472789 PANK1Q8TE04 598 aa13.22□□□□□ -0.29
SMARCD3-208ENST00000472789 CELF1Q92879 486 aaKnown RBP13.22□□□□□ -0.29
SMARCD3-208ENST00000472789 PLA2G12BQ9BX93 195 aa13.22□□□□□ -0.29
SMARCD3-208ENST00000472789 USP44Q9H0E7 712 aa13.22□□□□□ -0.29
SMARCD3-208ENST00000472789 GREM2Q9H772 168 aa13.22□□□□□ -0.29
SMARCD3-208ENST00000472789 NMRK2Q9NPI5 230 aa13.22□□□□□ -0.29
SMARCD3-208ENST00000472789 COG6Q9Y2V7 657 aa13.22□□□□□ -0.29
SMARCD3-208ENST00000472789 LAMB2P55268 1798 aa13.22□□□□□ -0.29
SMARCD3-208ENST00000472789 RPS8P62241 208 aaKnown RBP13.21□□□□□ -0.29
SMARCD3-208ENST00000472789 EPHA10Q5JZY3 1008 aa13.21□□□□□ -0.29
SMARCD3-208ENST00000472789 INTS3Q68E01 1043 aaKnown RBP13.21□□□□□ -0.29
SMARCD3-208ENST00000472789 LMBR1LQ6UX01 489 aa13.21□□□□□ -0.29
SMARCD3-208ENST00000472789 SLC51AQ86UW1 340 aa13.21□□□□□ -0.29
SMARCD3-208ENST00000472789 ANKRD18AQ8IVF6 992 aa13.21□□□□□ -0.29
SMARCD3-208ENST00000472789 TMEM57Q8N5G2 664 aa13.21□□□□□ -0.29
SMARCD3-208ENST00000472789 CCDC136Q96JN2 1154 aa13.21□□□□□ -0.29
SMARCD3-208ENST00000472789 CDC5LQ99459 802 aaKnown RBP13.21□□□□□ -0.29
SMARCD3-208ENST00000472789 TAOK3Q9H2K8 898 aa13.21□□□□□ -0.29
SMARCD3-208ENST00000472789 ARFGEF1Q9Y6D6 1849 aa13.2□□□□□ -0.3
SMARCD3-208ENST00000472789 ANKRD18BA2A2Z9 1011 aa13.2□□□□□ -0.3
SMARCD3-208ENST00000472789 ITGA6P23229 1130 aa13.2□□□□□ -0.3
SMARCD3-208ENST00000472789 IGHMBP2P38935 993 aaKnown RBP13.2□□□□□ -0.3
SMARCD3-208ENST00000472789 FOXO4P98177 505 aa13.2□□□□□ -0.3
SMARCD3-208ENST00000472789 IFIT5Q13325 482 aaKnown RBP13.2□□□□□ -0.3
SMARCD3-208ENST00000472789 TAF7LQ5H9L4 462 aa13.2□□□□□ -0.3
SMARCD3-208ENST00000472789 CC2D2BQ6DHV5 1058 aa13.2□□□□□ -0.3
SMARCD3-208ENST00000472789 RTKN2Q8IZC4 609 aa13.2□□□□□ -0.3
SMARCD3-208ENST00000472789 C7orf43Q8WVR3 580 aa13.2□□□□□ -0.3
SMARCD3-208ENST00000472789 MEIS3Q99687 375 aa13.2□□□□□ -0.3
SMARCD3-208ENST00000472789 BICC1Q9H694 974 aaKnown RBP13.2□□□□□ -0.3
SMARCD3-208ENST00000472789 HDAC5Q9UQL6 1122 aa13.2□□□□□ -0.3
SMARCD3-208ENST00000472789 ATP6V0A2Q9Y487 856 aa13.2□□□□□ -0.3
SMARCD3-208ENST00000472789 UTYO14607 1347 aa13.19□□□□□ -0.3
SMARCD3-208ENST00000472789 NFKBIEO00221 500 aa13.19□□□□□ -0.3
SMARCD3-208ENST00000472789 GNAI3P08754 354 aa13.19□□□□□ -0.3
SMARCD3-208ENST00000472789 RLBP1P12271 317 aa13.19□□□□□ -0.3
SMARCD3-208ENST00000472789 CCDC57Q2TAC2 916 aa13.19□□□□□ -0.3
SMARCD3-208ENST00000472789 C9orf131Q5VYM1 1079 aa13.19□□□□□ -0.3
SMARCD3-208ENST00000472789 TMC4Q7Z404 712 aa13.19□□□□□ -0.3
SMARCD3-208ENST00000472789 SP8Q8IXZ3 490 aa13.19□□□□□ -0.3
SMARCD3-208ENST00000472789 RNF181Q9P0P0 153 aa13.19□□□□□ -0.3
SMARCD3-208ENST00000472789 TAF1P21675 1872 aa13.19□□□□□ -0.3
SMARCD3-208ENST00000472789 MYH3P11055 1940 aa13.18□□□□□ -0.3
SMARCD3-208ENST00000472789 CSF1RP07333 972 aa13.18□□□□□ -0.3
SMARCD3-208ENST00000472789 HTRA3P83110 453 aa13.18□□□□□ -0.3
SMARCD3-208ENST00000472789 FKBP4Q02790 459 aaKnown RBP eCLIP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms