RNA–Protein interactions for RNA: ENST00000470994.1

GPNMB-208, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 538 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-208ENST00000470994 NBPF11Q86T75 865 aa9.16□□□□□ -0.94
GPNMB-208ENST00000470994 CNTLNQ9NXG0 1405 aa9.15□□□□□ -0.94
GPNMB-208ENST00000470994 SIGLEC1Q9BZZ2 1709 aa9.15□□□□□ -0.94
GPNMB-208ENST00000470994 MYO5CQ9NQX4 1742 aa9.15□□□□□ -0.94
GPNMB-208ENST00000470994 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.15□□□□□ -0.94
GPNMB-208ENST00000470994 ARTNQ5T4W7 220 aa9.15□□□□□ -0.94
GPNMB-208ENST00000470994 FYCO1Q9BQS8 1478 aa9.15□□□□□ -0.95
GPNMB-208ENST00000470994 LOC105371045A0A1W2PR82 267 aa9.14□□□□□ -0.95
GPNMB-208ENST00000470994 KIF3BO15066 747 aa9.14□□□□□ -0.95
GPNMB-208ENST00000470994 EML3Q32P44 896 aa9.14□□□□□ -0.95
GPNMB-208ENST00000470994 TNFRSF25Q93038 417 aa9.14□□□□□ -0.95
GPNMB-208ENST00000470994 MDFIQ99750 246 aa9.14□□□□□ -0.95
GPNMB-208ENST00000470994 PARP3Q9Y6F1 533 aa9.14□□□□□ -0.95
GPNMB-208ENST00000470994 USP3Q9Y6I4 520 aa9.14□□□□□ -0.95
GPNMB-208ENST00000470994 KDM5CP41229 1560 aa9.14□□□□□ -0.95
GPNMB-208ENST00000470994 DIP2CQ9Y2E4 1556 aa9.14□□□□□ -0.95
GPNMB-208ENST00000470994 DISP3Q9P2K9 1392 aa9.13□□□□□ -0.95
GPNMB-208ENST00000470994 ABL2P42684 1182 aa9.13□□□□□ -0.95
GPNMB-208ENST00000470994 BRPF1P55201 1214 aaPredicted RBP9.13□□□□□ -0.95
GPNMB-208ENST00000470994 PSME1Q06323 249 aa9.13□□□□□ -0.95
GPNMB-208ENST00000470994 LRRC69Q6ZNQ3 347 aa9.13□□□□□ -0.95
GPNMB-208ENST00000470994 SCHIP1Q9P0W5 487 aaPredicted RBP9.13□□□□□ -0.95
GPNMB-208ENST00000470994 NOD1Q9Y239 953 aa9.13□□□□□ -0.95
GPNMB-208ENST00000470994 ABCC1P33527 1531 aa9.13□□□□□ -0.95
GPNMB-208ENST00000470994 KIAA1107Q9UPP5 1409 aa9.13□□□□□ -0.95
GPNMB-208ENST00000470994 FER1L4A9Z1Z3 1794 aa9.12□□□□□ -0.95
GPNMB-208ENST00000470994 AGLP35573 1532 aa9.12□□□□□ -0.95
GPNMB-208ENST00000470994 TSPY4P0CV99 314 aa9.12□□□□□ -0.95
GPNMB-208ENST00000470994 TSPY10P0CW01 314 aa9.12□□□□□ -0.95
GPNMB-208ENST00000470994 TXLNAP40222 546 aa9.12□□□□□ -0.95
GPNMB-208ENST00000470994 TEAD4Q15561 434 aa9.12□□□□□ -0.95
GPNMB-208ENST00000470994 L3MBTL2Q969R5 705 aa9.12□□□□□ -0.95
GPNMB-208ENST00000470994 ZNF232Q9UNY5 417 aa9.12□□□□□ -0.95
GPNMB-208ENST00000470994 PLEKHH2Q8IVE3 1493 aa9.12□□□□□ -0.95
GPNMB-208ENST00000470994 A2MP01023 1474 aa9.11□□□□□ -0.95
GPNMB-208ENST00000470994 KRTAP9-6A0A140TA67 174 aa9.11□□□□□ -0.95
GPNMB-208ENST00000470994 C9orf172C9J069 976 aa9.11□□□□□ -0.95
GPNMB-208ENST00000470994 UBAP1LF5GYI3 381 aa9.11□□□□□ -0.95
GPNMB-208ENST00000470994 FAM229AH3BQW9 127 aa9.11□□□□□ -0.95
GPNMB-208ENST00000470994 LZTS3O60299 673 aaPredicted RBP9.11□□□□□ -0.95
GPNMB-208ENST00000470994 ADH7P40394 386 aa9.11□□□□□ -0.95
GPNMB-208ENST00000470994 PRSS36Q5K4E3 855 aa9.11□□□□□ -0.95
GPNMB-208ENST00000470994 MICALL1Q8N3F8 863 aa9.11□□□□□ -0.95
GPNMB-208ENST00000470994 PCDHGA11Q9Y5H2 935 aa9.11□□□□□ -0.95
GPNMB-208ENST00000470994 PTPRTO14522 1441 aa9.11□□□□□ -0.95
GPNMB-208ENST00000470994 SYCP2Q9BX26 1530 aa9.1□□□□□ -0.95
GPNMB-208ENST00000470994 ZNF335Q9H4Z2 1342 aaPredicted RBP9.1□□□□□ -0.95
GPNMB-208ENST00000470994 ALBP02768 609 aa9.1□□□□□ -0.95
GPNMB-208ENST00000470994 NOS2P35228 1153 aa9.1□□□□□ -0.95
GPNMB-208ENST00000470994 FOXD4L6Q3SYB3 417 aaPredicted RBP9.1□□□□□ -0.95
GPNMB-208ENST00000470994 FOXD4L3Q6VB84 417 aaPredicted RBP9.1□□□□□ -0.95
GPNMB-208ENST00000470994 GDPD2Q9HCC8 539 aa9.1□□□□□ -0.95
GPNMB-208ENST00000470994 ABCA6Q8N139 1617 aa9.09□□□□□ -0.95
GPNMB-208ENST00000470994 WASHC2CQ9Y4E1 1318 aa9.09□□□□□ -0.95
GPNMB-208ENST00000470994 SAMD9LQ8IVG5 1584 aa9.09□□□□□ -0.95
GPNMB-208ENST00000470994 EML1O00423 815 aa9.09□□□□□ -0.95
GPNMB-208ENST00000470994 GTF2IP78347 998 aa9.09□□□□□ -0.95
GPNMB-208ENST00000470994 SPEM2Q0P670 501 aa9.09□□□□□ -0.95
GPNMB-208ENST00000470994 RHPN1Q8TCX5 695 aa9.09□□□□□ -0.95
GPNMB-208ENST00000470994 ZDHHC1Q8WTX9 485 aa9.09□□□□□ -0.95
GPNMB-208ENST00000470994 CHMP3Q9Y3E7 222 aa9.09□□□□□ -0.95
GPNMB-208ENST00000470994 PREX2Q70Z35 1606 aa9.09□□□□□ -0.95
GPNMB-208ENST00000470994 CDC42BPBQ9Y5S2 1711 aa9.08□□□□□ -0.96
GPNMB-208ENST00000470994 NPATQ14207 1427 aa9.08□□□□□ -0.96
GPNMB-208ENST00000470994 NCOA1Q15788 1441 aa9.08□□□□□ -0.96
GPNMB-208ENST00000470994 CEP162Q5TB80 1403 aa9.08□□□□□ -0.96
GPNMB-208ENST00000470994 H2AFB1P0C5Y9 115 aa9.08□□□□□ -0.96
GPNMB-208ENST00000470994 H2AFB2P0C5Z0 115 aa9.08□□□□□ -0.96
GPNMB-208ENST00000470994 TRAPPC3LQ5T215 181 aa9.08□□□□□ -0.96
GPNMB-208ENST00000470994 ZNF358Q9NW07 568 aa9.08□□□□□ -0.96
GPNMB-208ENST00000470994 ANKIB1Q9P2G1 1089 aa9.08□□□□□ -0.96
GPNMB-208ENST00000470994 STARD13Q9Y3M8 1113 aa9.08□□□□□ -0.96
GPNMB-208ENST00000470994 DHX29Q7Z478 1369 aaKnown RBP9.08□□□□□ -0.96
GPNMB-208ENST00000470994 REREQ9P2R6 1566 aa9.07□□□□□ -0.96
GPNMB-208ENST00000470994 SERTM1A2A2V5 107 aa9.07□□□□□ -0.96
GPNMB-208ENST00000470994 LILRB5O75023 590 aa9.07□□□□□ -0.96
GPNMB-208ENST00000470994 NID1P14543 1247 aa9.07□□□□□ -0.96
GPNMB-208ENST00000470994 RAC1P63000 192 aa9.07□□□□□ -0.96
GPNMB-208ENST00000470994 NRG1Q02297 640 aaPredicted RBP9.07□□□□□ -0.96
GPNMB-208ENST00000470994 COL9A3Q14050 684 aaPredicted RBP9.07□□□□□ -0.96
GPNMB-208ENST00000470994 GRIK4Q16099 956 aa9.07□□□□□ -0.96
GPNMB-208ENST00000470994 ILDR2Q71H61 639 aa9.07□□□□□ -0.96
GPNMB-208ENST00000470994 SLC9A9Q8IVB4 645 aa9.07□□□□□ -0.96
GPNMB-208ENST00000470994 SLC30A3Q99726 388 aa9.07□□□□□ -0.96
GPNMB-208ENST00000470994 PTPRKQ15262 1439 aa9.06□□□□□ -0.96
GPNMB-208ENST00000470994 ATP7AQ04656 1500 aa9.06□□□□□ -0.96
GPNMB-208ENST00000470994 LRRIQ1Q96JM4 1722 aa9.06□□□□□ -0.96
GPNMB-208ENST00000470994 SKIP12755 728 aa9.06□□□□□ -0.96
GPNMB-208ENST00000470994 ELNP15502 786 aa9.06□□□□□ -0.96
GPNMB-208ENST00000470994 SFSWAPQ12872 951 aaKnown RBP9.06□□□□□ -0.96
GPNMB-208ENST00000470994 LRP8Q14114 963 aa9.06□□□□□ -0.96
GPNMB-208ENST00000470994 ANKLE2Q86XL3 938 aa9.06□□□□□ -0.96
GPNMB-208ENST00000470994 PREX1Q8TCU6 1659 aa9.06□□□□□ -0.96
GPNMB-208ENST00000470994 SETD1BQ9UPS6 1966 aaKnown RBP9.06□□□□□ -0.96
GPNMB-208ENST00000470994 KIDINS220Q9ULH0 1771 aa9.05□□□□□ -0.96
GPNMB-208ENST00000470994 ITSN2Q9NZM3 1697 aa9.05□□□□□ -0.96
GPNMB-208ENST00000470994 MBD5Q9P267 1494 aa9.05□□□□□ -0.96
GPNMB-208ENST00000470994 TNRQ92752 1358 aa9.05□□□□□ -0.96
GPNMB-208ENST00000470994 PIP4K2BP78356 416 aa9.05□□□□□ -0.96
GPNMB-208ENST00000470994 KANK4Q5T7N3 995 aaPredicted RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms