RNA–Protein interactions for RNA: ENST00000469739.6

TOP3A-203, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 3,196 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-203ENST00000469739 VPS37CA5D8V6 355 aaPredicted RBP11.31□□□□□ -0.6
TOP3A-203ENST00000469739 ADAMTS2O95450 1211 aa11.31□□□□□ -0.6
TOP3A-203ENST00000469739 CWC22Q9HCG8 908 aaKnown RBP11.31□□□□□ -0.6
TOP3A-203ENST00000469739 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.31□□□□□ -0.6
TOP3A-203ENST00000469739 FIBPO43427 364 aa11.31□□□□□ -0.6
TOP3A-203ENST00000469739 IL2RBP14784 551 aa11.31□□□□□ -0.6
TOP3A-203ENST00000469739 TAF7LQ5H9L4 462 aa11.31□□□□□ -0.6
TOP3A-203ENST00000469739 DNAJC10Q8IXB1 793 aa11.31□□□□□ -0.6
TOP3A-203ENST00000469739 EVI5LQ96CN4 794 aa11.31□□□□□ -0.6
TOP3A-203ENST00000469739 PDRG1Q9NUG6 133 aa11.31□□□□□ -0.6
TOP3A-203ENST00000469739 CPDO75976 1380 aa11.31□□□□□ -0.6
TOP3A-203ENST00000469739 CYP2E1P05181 493 aaPredicted RBP11.3□□□□□ -0.6
TOP3A-203ENST00000469739 RUFY2Q8WXA3 655 aa11.3□□□□□ -0.6
TOP3A-203ENST00000469739 TUBGCP6Q96RT7 1819 aa11.3□□□□□ -0.6
TOP3A-203ENST00000469739 TTC41PQ6P2S7 1318 aa11.3□□□□□ -0.6
TOP3A-203ENST00000469739 GOLIM4O00461 696 aa11.3□□□□□ -0.6
TOP3A-203ENST00000469739 PRIM1P49642 420 aaKnown RBP11.3□□□□□ -0.6
TOP3A-203ENST00000469739 SKOR2Q2VWA4 1001 aaPredicted RBP11.3□□□□□ -0.6
TOP3A-203ENST00000469739 ZSCAN23Q3MJ62 389 aa11.3□□□□□ -0.6
TOP3A-203ENST00000469739 LRP10Q7Z4F1 713 aa11.3□□□□□ -0.6
TOP3A-203ENST00000469739 ZNF526Q8TF50 670 aaPredicted RBP11.3□□□□□ -0.6
TOP3A-203ENST00000469739 WDR17Q8IZU2 1322 aa11.3□□□□□ -0.6
TOP3A-203ENST00000469739 KLHL40Q2TBA0 621 aa11.3□□□□□ -0.6
TOP3A-203ENST00000469739 TNNI3KQ59H18 835 aa11.3□□□□□ -0.6
TOP3A-203ENST00000469739 TMEM63CQ9P1W3 806 aa11.3□□□□□ -0.6
TOP3A-203ENST00000469739 SMC3Q9UQE7 1217 aa11.3□□□□□ -0.6
TOP3A-203ENST00000469739 FPGT-TNNI3KV9GXZ4 949 aa11.3□□□□□ -0.6
TOP3A-203ENST00000469739 PARP4Q9UKK3 1724 aaKnown RBP11.29□□□□□ -0.6
TOP3A-203ENST00000469739 CREB3L3Q68CJ9 461 aa11.29□□□□□ -0.6
TOP3A-203ENST00000469739 TMOD3Q9NYL9 352 aa11.29□□□□□ -0.6
TOP3A-203ENST00000469739 CNPY2Q9Y2B0 182 aa11.29□□□□□ -0.6
TOP3A-203ENST00000469739 CCDC171Q6TFL3 1326 aa11.29□□□□□ -0.6
TOP3A-203ENST00000469739 MRC1P22897 1456 aa11.29□□□□□ -0.6
TOP3A-203ENST00000469739 A0A0G2JLW4 131 aa11.29□□□□□ -0.6
TOP3A-203ENST00000469739 ZKSCAN1P17029 563 aaPredicted RBP11.29□□□□□ -0.6
TOP3A-203ENST00000469739 ANAPC15P60006 121 aa11.29□□□□□ -0.6
TOP3A-203ENST00000469739 FKBP4Q02790 459 aaKnown RBP eCLIP11.29□□□□□ -0.6
TOP3A-203ENST00000469739 CHST3Q7LGC8 479 aa11.29□□□□□ -0.6
TOP3A-203ENST00000469739 HDAC5Q9UQL6 1122 aa11.29□□□□□ -0.6
TOP3A-203ENST00000469739 NASPP49321 788 aaPredicted RBP11.28□□□□□ -0.6
TOP3A-203ENST00000469739 PLBD2Q8NHP8 589 aa11.28□□□□□ -0.6
TOP3A-203ENST00000469739 CYP46A1Q9Y6A2 500 aa11.28□□□□□ -0.6
TOP3A-203ENST00000469739 AOX1Q06278 1338 aa11.28□□□□□ -0.6
TOP3A-203ENST00000469739 NHSL1Q5SYE7 1610 aa11.28□□□□□ -0.6
TOP3A-203ENST00000469739 NUTM2BA6NNL0 878 aaPredicted RBP11.28□□□□□ -0.6
TOP3A-203ENST00000469739 NUTM2EB1AL46 878 aaPredicted RBP11.28□□□□□ -0.6
TOP3A-203ENST00000469739 NUTM2AQ8IVF1 878 aaPredicted RBP11.28□□□□□ -0.6
TOP3A-203ENST00000469739 CWC25Q9NXE8 425 aaPredicted RBP11.28□□□□□ -0.6
TOP3A-203ENST00000469739 LIMCH1Q9UPQ0 1083 aa11.28□□□□□ -0.6
TOP3A-203ENST00000469739 GJB2P29033 226 aa11.28□□□□□ -0.6
TOP3A-203ENST00000469739 ME3Q16798 604 aa11.28□□□□□ -0.6
TOP3A-203ENST00000469739 ACSBG1Q96GR2 724 aa11.28□□□□□ -0.6
TOP3A-203ENST00000469739 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.28□□□□□ -0.62e-7■■□□□ 13.3
TOP3A-203ENST00000469739 TBC1D2BQ9UPU7 963 aa11.28□□□□□ -0.6
TOP3A-203ENST00000469739 PCDH11XQ9BZA7 1347 aa11.28□□□□□ -0.6
TOP3A-203ENST00000469739 PCDH11YQ9BZA8 1340 aa11.28□□□□□ -0.6
TOP3A-203ENST00000469739 BRD1O95696 1058 aa11.27□□□□□ -0.6
TOP3A-203ENST00000469739 SYT1P21579 422 aa11.27□□□□□ -0.6
TOP3A-203ENST00000469739 RFX5P48382 616 aaPredicted RBP11.27□□□□□ -0.6
TOP3A-203ENST00000469739 MCM2P49736 904 aa11.27□□□□□ -0.6
TOP3A-203ENST00000469739 GORABQ5T7V8 394 aa11.27□□□□□ -0.6
TOP3A-203ENST00000469739 VPS53Q5VIR6 699 aa11.27□□□□□ -0.6
TOP3A-203ENST00000469739 PI16Q6UXB8 463 aa11.27□□□□□ -0.6
TOP3A-203ENST00000469739 USP48Q86UV5 1035 aa11.27□□□□□ -0.6
TOP3A-203ENST00000469739 RBSNQ9H1K0 784 aa11.27□□□□□ -0.6
TOP3A-203ENST00000469739 PLEKHG2Q9H7P9 1386 aa11.27□□□□□ -0.61
TOP3A-203ENST00000469739 SLC27A2O14975 620 aa11.27□□□□□ -0.61
TOP3A-203ENST00000469739 RAD21O60216 631 aa11.27□□□□□ -0.61
TOP3A-203ENST00000469739 CUL4AQ13619 759 aa11.27□□□□□ -0.61
TOP3A-203ENST00000469739 PIGBQ92521 554 aa11.27□□□□□ -0.61
TOP3A-203ENST00000469739 DDX11Q96FC9 970 aa11.27□□□□□ -0.61
TOP3A-203ENST00000469739 TPCN1Q9ULQ1 816 aa11.27□□□□□ -0.61
TOP3A-203ENST00000469739 KDM4AO75164 1064 aa11.26□□□□□ -0.61
TOP3A-203ENST00000469739 SOS2Q07890 1332 aaPredicted RBP11.26□□□□□ -0.61
TOP3A-203ENST00000469739 HSP90B1P14625 803 aaKnown RBP11.26□□□□□ -0.61
TOP3A-203ENST00000469739 RAB11FIP4Q86YS3 637 aa11.26□□□□□ -0.61
TOP3A-203ENST00000469739 TTC14Q96N46 770 aa11.26□□□□□ -0.61
TOP3A-203ENST00000469739 GLI3P10071 1580 aa11.26□□□□□ -0.61
TOP3A-203ENST00000469739 SNAP23O00161 211 aa11.26□□□□□ -0.61
TOP3A-203ENST00000469739 KCNQ4P56696 695 aa11.26□□□□□ -0.61
TOP3A-203ENST00000469739 HLFQ16534 295 aa11.26□□□□□ -0.61
TOP3A-203ENST00000469739 ISY1Q9ULR0 285 aaKnown RBP11.26□□□□□ -0.61
TOP3A-203ENST00000469739 SHANK3Q9BYB0 1731 aa11.26□□□□□ -0.61
TOP3A-203ENST00000469739 ADORA1P30542 326 aa11.25□□□□□ -0.61
TOP3A-203ENST00000469739 FOXO4P98177 505 aa11.25□□□□□ -0.61
TOP3A-203ENST00000469739 NECTIN1Q15223 517 aa11.25□□□□□ -0.61
TOP3A-203ENST00000469739 BLOC1S2Q6QNY1 142 aa11.25□□□□□ -0.61
TOP3A-203ENST00000469739 HELBQ8NG08 1087 aaPredicted RBP11.25□□□□□ -0.61
TOP3A-203ENST00000469739 COPRSQ9NQ92 184 aa11.25□□□□□ -0.61
TOP3A-203ENST00000469739 TCHHQ07283 1943 aa11.25□□□□□ -0.61
TOP3A-203ENST00000469739 LAMB4A4D0S4 1761 aa11.25□□□□□ -0.61
TOP3A-203ENST00000469739 UTYO14607 1347 aa11.25□□□□□ -0.61
TOP3A-203ENST00000469739 STX6O43752 255 aa11.25□□□□□ -0.61
TOP3A-203ENST00000469739 HAND2P61296 217 aa11.25□□□□□ -0.61
TOP3A-203ENST00000469739 DNM1Q05193 864 aaKnown RBP11.25□□□□□ -0.61
TOP3A-203ENST00000469739 SMIM5Q71RC9 77 aa11.25□□□□□ -0.61
TOP3A-203ENST00000469739 COL5A2P05997 1499 aaPredicted RBP11.25□□□□□ -0.61
TOP3A-203ENST00000469739 CEBPZQ03701 1054 aaKnown RBP11.24□□□□□ -0.61
TOP3A-203ENST00000469739 TFIP11Q9UBB9 837 aaKnown RBP11.24□□□□□ -0.61
TOP3A-203ENST00000469739 MTMR7Q9Y216 660 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms