RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 TARSP26639 723 aaKnown RBP10.15□□□□□ -0.78
SYNE1-218ENST00000468937 DNAJB12Q9NXW2 375 aaKnown RBP10.15□□□□□ -0.78
SYNE1-218ENST00000468937 KCNMB2Q9Y691 235 aa10.15□□□□□ -0.78
SYNE1-218ENST00000468937 FAM26DQ5JW98 314 aa10.14□□□□□ -0.79
SYNE1-218ENST00000468937 PHLDB3Q6NSJ2 640 aa10.14□□□□□ -0.79
SYNE1-218ENST00000468937 DHX32Q7L7V1 743 aaKnown RBP10.14□□□□□ -0.79
SYNE1-218ENST00000468937 ZFATQ9P243 1243 aa10.14□□□□□ -0.79
SYNE1-218ENST00000468937 SLC6A14Q9UN76 642 aa10.14□□□□□ -0.79
SYNE1-218ENST00000468937 M0R082 166 aa10.13□□□□□ -0.79
SYNE1-218ENST00000468937 RPLP1P05386 114 aaKnown RBP10.13□□□□□ -0.79
SYNE1-218ENST00000468937 SCNN1AP37088 669 aa10.13□□□□□ -0.79
SYNE1-218ENST00000468937 NOM1Q5C9Z4 860 aaKnown RBP10.13□□□□□ -0.79
SYNE1-218ENST00000468937 ALKBH2Q6NS38 261 aa10.13□□□□□ -0.79
SYNE1-218ENST00000468937 RETREG2Q8NC44 543 aa10.13□□□□□ -0.79
SYNE1-218ENST00000468937 ZNF417Q8TAU3 575 aa10.13□□□□□ -0.79
SYNE1-218ENST00000468937 GPR152Q8TDT2 470 aa10.13□□□□□ -0.79
SYNE1-218ENST00000468937 ZNF587Q96SQ5 575 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-218ENST00000468937 PRDM6Q9NQX0 595 aa10.13□□□□□ -0.79
SYNE1-218ENST00000468937 SPDYE3A6NKU9 549 aa10.12□□□□□ -0.79
SYNE1-218ENST00000468937 UBAP1LF5GYI3 381 aa10.12□□□□□ -0.79
SYNE1-218ENST00000468937 ZBTB39O15060 712 aa10.12□□□□□ -0.79
SYNE1-218ENST00000468937 PCSK2P16519 638 aa10.12□□□□□ -0.79
SYNE1-218ENST00000468937 SF3B2Q13435 895 aaKnown RBP10.12□□□□□ -0.79
SYNE1-218ENST00000468937 NLRP13Q86W25 1043 aa10.12□□□□□ -0.79
SYNE1-218ENST00000468937 MICALL1Q8N3F8 863 aa10.12□□□□□ -0.79
SYNE1-218ENST00000468937 TLR7Q9NYK1 1049 aaKnown RBP10.12□□□□□ -0.79
SYNE1-218ENST00000468937 STARD13Q9Y3M8 1113 aa10.12□□□□□ -0.79
SYNE1-218ENST00000468937 PSAPP07602 524 aa10.11□□□□□ -0.79
SYNE1-218ENST00000468937 TRPM4Q8TD43 1214 aa10.11□□□□□ -0.79
SYNE1-218ENST00000468937 LILRB5O75023 590 aa10.1□□□□□ -0.79
SYNE1-218ENST00000468937 FAM13AO94988 1023 aa10.1□□□□□ -0.79
SYNE1-218ENST00000468937 ALBP02768 609 aa10.1□□□□□ -0.79
SYNE1-218ENST00000468937 NRLP54845 237 aa10.1□□□□□ -0.79
SYNE1-218ENST00000468937 GPLD1P80108 840 aa10.1□□□□□ -0.79
SYNE1-218ENST00000468937 PLAURQ03405 335 aa10.1□□□□□ -0.79
SYNE1-218ENST00000468937 TTC16Q8NEE8 873 aa10.1□□□□□ -0.79
SYNE1-218ENST00000468937 DCAF5Q96JK2 942 aa10.1□□□□□ -0.79
SYNE1-218ENST00000468937 ABL1P00519 1130 aa10.09□□□□□ -0.79
SYNE1-218ENST00000468937 FKBP4Q02790 459 aaKnown RBP eCLIP10.09□□□□□ -0.79
SYNE1-218ENST00000468937 TRIP4Q15650 581 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-218ENST00000468937 C20orf204Q6ZNR8 217 aa10.09□□□□□ -0.79
SYNE1-218ENST00000468937 FAM35AQ86V20 835 aa10.09□□□□□ -0.79
SYNE1-218ENST00000468937 RGS9O75916 674 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-218ENST00000468937 NPR3P17342 541 aa10.08□□□□□ -0.8
SYNE1-218ENST00000468937 MPSTP25325 297 aa10.08□□□□□ -0.8
SYNE1-218ENST00000468937 SOX18P35713 384 aa10.08□□□□□ -0.8
SYNE1-218ENST00000468937 AAMPQ13685 434 aa10.08□□□□□ -0.8
SYNE1-218ENST00000468937 PSAPL1Q6NUJ1 521 aa10.08□□□□□ -0.8
SYNE1-218ENST00000468937 PLVAPQ9BX97 442 aa10.08□□□□□ -0.8
SYNE1-218ENST00000468937 SUV39H2Q9H5I1 410 aa10.08□□□□□ -0.8
SYNE1-218ENST00000468937 MMP20O60882 483 aa10.07□□□□□ -0.8
SYNE1-218ENST00000468937 CPB1P15086 417 aa10.07□□□□□ -0.8
SYNE1-218ENST00000468937 EIF1AXP47813 144 aaKnown RBP10.07□□□□□ -0.8
SYNE1-218ENST00000468937 TTC39BQ5VTQ0 682 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-218ENST00000468937 ATCAYQ86WG3 371 aa10.07□□□□□ -0.8
SYNE1-218ENST00000468937 NUDT16Q96DE0 195 aaKnown RBP10.07□□□□□ -0.8
SYNE1-218ENST00000468937 JPH1Q9HDC5 661 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-218ENST00000468937 FRRS1LQ9P0K9 344 aa10.07□□□□□ -0.8
SYNE1-218ENST00000468937 EGFL7Q9UHF1 273 aa10.07□□□□□ -0.8
SYNE1-218ENST00000468937 ZBTB42B2RXF5 422 aa10.06□□□□□ -0.8
SYNE1-218ENST00000468937 MZF1P28698 734 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-218ENST00000468937 DNM1Q05193 864 aaKnown RBP10.06□□□□□ -0.8
SYNE1-218ENST00000468937 PDE12Q6L8Q7 609 aaKnown RBP10.06□□□□□ -0.8
SYNE1-218ENST00000468937 ELMSAN1Q6PJG2 1045 aa10.06□□□□□ -0.8
SYNE1-218ENST00000468937 KCTD17Q8N5Z5 321 aa10.06□□□□□ -0.8
SYNE1-218ENST00000468937 EDEM1Q92611 657 aa10.06□□□□□ -0.8
SYNE1-218ENST00000468937 TRIM11Q96F44 468 aa10.06□□□□□ -0.8
SYNE1-218ENST00000468937 RBSNQ9H1K0 784 aa10.06□□□□□ -0.8
SYNE1-218ENST00000468937 HOXD8P13378 290 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-218ENST00000468937 COL8A1P27658 744 aa10.05□□□□□ -0.8
SYNE1-218ENST00000468937 MLLT1Q03111 559 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-218ENST00000468937 MTMR3Q13615 1198 aa10.05□□□□□ -0.8
SYNE1-218ENST00000468937 PRRT3Q5FWE3 981 aa10.05□□□□□ -0.8
SYNE1-218ENST00000468937 NUDT8Q8WV74 236 aa10.05□□□□□ -0.8
SYNE1-218ENST00000468937 NAGPAQ9UK23 515 aa10.05□□□□□ -0.8
SYNE1-218ENST00000468937 LOC102724428A0A0B4J2F2 783 aa10.04□□□□□ -0.8
SYNE1-218ENST00000468937 USP5P45974 858 aa10.04□□□□□ -0.8
SYNE1-218ENST00000468937 SIK1P57059 783 aa10.04□□□□□ -0.8
SYNE1-218ENST00000468937 C8orf86Q6ZUL3 223 aa10.04□□□□□ -0.8
SYNE1-218ENST00000468937 OR13H1Q8NG92 308 aa10.04□□□□□ -0.8
SYNE1-218ENST00000468937 TTC9Q92623 222 aa10.04□□□□□ -0.8
SYNE1-218ENST00000468937 ABI2Q9NYB9 513 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-218ENST00000468937 GHRHP01286 108 aa10.03□□□□□ -0.8
SYNE1-218ENST00000468937 IGHA1P01876 353 aa10.03□□□□□ -0.8
SYNE1-218ENST00000468937 PDGFAP04085 211 aa10.03□□□□□ -0.8
SYNE1-218ENST00000468937 NID1P14543 1247 aa10.03□□□□□ -0.8
SYNE1-218ENST00000468937 EIF2AK2P19525 551 aaKnown RBP10.03□□□□□ -0.8
SYNE1-218ENST00000468937 COL9A3Q14050 684 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-218ENST00000468937 PERM1Q5SV97 790 aa10.03□□□□□ -0.8
SYNE1-218ENST00000468937 ZNF438Q7Z4V0 828 aa10.03□□□□□ -0.8
SYNE1-218ENST00000468937 SPATA31C1P0DKV0 1188 aa10.02□□□□□ -0.81
SYNE1-218ENST00000468937 AFF1P51825 1210 aaKnown RBP10.02□□□□□ -0.81
SYNE1-218ENST00000468937 TRIM28Q13263 835 aaKnown RBP10.02□□□□□ -0.81
SYNE1-218ENST00000468937 ZNF211Q13398 564 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-218ENST00000468937 C8orf34Q49A92 452 aa10.02□□□□□ -0.81
SYNE1-218ENST00000468937 TRAPPC3LQ5T215 181 aa10.02□□□□□ -0.81
SYNE1-218ENST00000468937 XKR5Q6UX68 686 aa10.02□□□□□ -0.81
SYNE1-218ENST00000468937 HFE2Q6ZVN8 426 aa10.02□□□□□ -0.81
SYNE1-218ENST00000468937 CCER1Q8TC90 406 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-218ENST00000468937 NSUN5Q96P11 429 aaKnown RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms