RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 COPS6Q7L5N1 327 aa22.3■■□□□ 1.16
CPSF4-209ENST00000465132 ATP6V0A2Q9Y487 856 aa22.3■■□□□ 1.16
CPSF4-209ENST00000465132 CAPN15O75808 1086 aa22.29■■□□□ 1.16
CPSF4-209ENST00000465132 LMOD1P29536 600 aaPredicted RBP22.29■■□□□ 1.16
CPSF4-209ENST00000465132 VEGFBP49765 207 aa22.29■■□□□ 1.16
CPSF4-209ENST00000465132 HSP90AB3PQ58FF7 597 aa22.29■■□□□ 1.16
CPSF4-209ENST00000465132 C8orf58Q8NAV2 365 aa22.29■■□□□ 1.16
CPSF4-209ENST00000465132 XAGE3Q8WTP9 111 aa22.29■■□□□ 1.16
CPSF4-209ENST00000465132 NECTIN2Q92692 538 aa22.29■■□□□ 1.16
CPSF4-209ENST00000465132 DBF4Q9UBU7 674 aaPredicted RBP22.29■■□□□ 1.16
CPSF4-209ENST00000465132 ABCC4O15439 1325 aa22.29■■□□□ 1.16
CPSF4-209ENST00000465132 ELL2O00472 640 aaPredicted RBP22.28■■□□□ 1.16
CPSF4-209ENST00000465132 SCNN1DP51172 638 aa22.28■■□□□ 1.16
CPSF4-209ENST00000465132 AIMP1Q12904 312 aaKnown RBP22.28■■□□□ 1.16
CPSF4-209ENST00000465132 NLRP10Q86W26 655 aa22.28■■□□□ 1.16
CPSF4-209ENST00000465132 NIM1KQ8IY84 436 aa22.28■■□□□ 1.16
CPSF4-209ENST00000465132 TMX4Q9H1E5 349 aaPredicted RBP22.28■■□□□ 1.16
CPSF4-209ENST00000465132 PPIP5K2O43314 1243 aa22.27■■□□□ 1.16
CPSF4-209ENST00000465132 EPS15P42566 896 aa22.27■■□□□ 1.16
CPSF4-209ENST00000465132 LTBP1Q14766 1721 aa22.27■■□□□ 1.16
CPSF4-209ENST00000465132 VPS33BQ9H267 617 aa22.27■■□□□ 1.16
CPSF4-209ENST00000465132 DDX21Q9NR30 783 aaKnown RBP eCLIP22.27■■□□□ 1.16
CPSF4-209ENST00000465132 TCIRG1Q13488 830 aa22.26■■□□□ 1.15
CPSF4-209ENST00000465132 KRT24Q2M2I5 525 aa22.26■■□□□ 1.15
CPSF4-209ENST00000465132 FOXN1O15353 648 aa22.25■■□□□ 1.15
CPSF4-209ENST00000465132 VAMP4O75379 141 aa22.25■■□□□ 1.15
CPSF4-209ENST00000465132 BBOX1O75936 387 aa22.25■■□□□ 1.15
CPSF4-209ENST00000465132 HCLS1P14317 486 aaPredicted RBP22.25■■□□□ 1.15
CPSF4-209ENST00000465132 AOC3Q16853 763 aa22.25■■□□□ 1.15
CPSF4-209ENST00000465132 RTFDC1Q9BY42 306 aaPredicted RBP22.25■■□□□ 1.15
CPSF4-209ENST00000465132 HYPKQ9NX55 129 aa22.25■■□□□ 1.15
CPSF4-209ENST00000465132 RASSF10A6NK89 507 aa22.24■■□□□ 1.15
CPSF4-209ENST00000465132 DEFB115Q30KQ5 88 aa22.24■■□□□ 1.15
CPSF4-209ENST00000465132 SP8Q8IXZ3 490 aa22.24■■□□□ 1.15
CPSF4-209ENST00000465132 SUPT20HQ8NEM7 779 aa22.24■■□□□ 1.15
CPSF4-209ENST00000465132 TRMT112Q9UI30 125 aaKnown RBP22.24■■□□□ 1.15
CPSF4-209ENST00000465132 ALDH1L2Q3SY69 923 aa22.23■■□□□ 1.15
CPSF4-209ENST00000465132 USP50Q70EL3 339 aaPredicted RBP22.23■■□□□ 1.15
CPSF4-209ENST00000465132 TSPYL6Q8N831 410 aa22.23■■□□□ 1.15
CPSF4-209ENST00000465132 ZNRF3Q9ULT6 936 aa22.23■■□□□ 1.15
CPSF4-209ENST00000465132 SH3TC1Q8TE82 1336 aa22.23■■□□□ 1.15
CPSF4-209ENST00000465132 DPP8Q6V1X1 898 aaPredicted RBP22.22■■□□□ 1.15
CPSF4-209ENST00000465132 DDX46Q7L014 1031 aaKnown RBP22.22■■□□□ 1.15
CPSF4-209ENST00000465132 CHPF2Q9P2E5 772 aa22.22■■□□□ 1.15
CPSF4-209ENST00000465132 ANKRD36CQ5JPF3 1778 aa22.22■■□□□ 1.15
CPSF4-209ENST00000465132 CXCL9Q07325 125 aa22.21■■□□□ 1.15
CPSF4-209ENST00000465132 MPNDQ8N594 471 aa22.21■■□□□ 1.15
CPSF4-209ENST00000465132 AIDAQ96BJ3 306 aa22.21■■□□□ 1.15
CPSF4-209ENST00000465132 WBP1LQ9NX94 342 aa22.21■■□□□ 1.15
CPSF4-209ENST00000465132 ABT1Q9ULW3 272 aaKnown RBP22.21■■□□□ 1.15
CPSF4-209ENST00000465132 CTCFP49711 727 aaPredicted RBP22.2■■□□□ 1.14
CPSF4-209ENST00000465132 GRAPQ13588 217 aa22.2■■□□□ 1.14
CPSF4-209ENST00000465132 GRAPLQ8TC17 118 aaPredicted RBP22.2■■□□□ 1.14
CPSF4-209ENST00000465132 PRDM10Q9NQV6 1147 aa22.2■■□□□ 1.14
CPSF4-209ENST00000465132 GPRC5DQ9NZD1 345 aa22.2■■□□□ 1.14
CPSF4-209ENST00000465132 DDX58O95786 925 aaKnown RBP22.19■■□□□ 1.14
CPSF4-209ENST00000465132 FMR1Q06787 632 aaKnown RBP eCLIP22.19■■□□□ 1.14
CPSF4-209ENST00000465132 KIAA2012Q0VF49 1180 aa22.19■■□□□ 1.14
CPSF4-209ENST00000465132 PLBD2Q8NHP8 589 aa22.19■■□□□ 1.14
CPSF4-209ENST00000465132 ADARB2Q9NS39 739 aaKnown RBP22.19■■□□□ 1.14
CPSF4-209ENST00000465132 LAMB2P55268 1798 aa22.19■■□□□ 1.14
CPSF4-209ENST00000465132 WDR33Q9C0J8 1336 aaKnown RBP22.18■■□□□ 1.14
CPSF4-209ENST00000465132 SLC4A2P04920 1241 aa22.18■■□□□ 1.14
CPSF4-209ENST00000465132 ANKRD13DQ6ZTN6 518 aa22.17■■□□□ 1.14
CPSF4-209ENST00000465132 TRAF5O00463 557 aa22.16■■□□□ 1.14
CPSF4-209ENST00000465132 GMPSP49915 693 aaPredicted RBP22.16■■□□□ 1.14
CPSF4-209ENST00000465132 CIAPIN1Q6FI81 312 aa22.16■■□□□ 1.14
CPSF4-209ENST00000465132 TMC4Q7Z404 712 aa22.16■■□□□ 1.14
CPSF4-209ENST00000465132 ISCA1Q9BUE6 129 aa22.16■■□□□ 1.14
CPSF4-209ENST00000465132 SMC4Q9NTJ3 1288 aa22.16■■□□□ 1.14
CPSF4-209ENST00000465132 CST9Q5W186 159 aa22.15■■□□□ 1.14
CPSF4-209ENST00000465132 KIF16BQ96L93 1317 aa22.14■■□□□ 1.14
CPSF4-209ENST00000465132 CDHR2Q9BYE9 1310 aa22.14■■□□□ 1.14
CPSF4-209ENST00000465132 IPO8O15397 1037 aaKnown RBP22.14■■□□□ 1.13
CPSF4-209ENST00000465132 RAD17O75943 681 aa22.14■■□□□ 1.13
CPSF4-209ENST00000465132 MAP2K1Q02750 393 aaPredicted RBP22.14■■□□□ 1.13
CPSF4-209ENST00000465132 TNIP1Q15025 636 aa22.14■■□□□ 1.13
CPSF4-209ENST00000465132 FAM89AQ96GI7 184 aa22.14■■□□□ 1.13
CPSF4-209ENST00000465132 ATP5J2-PTCD1G3V325 749 aa22.13■■□□□ 1.13
CPSF4-209ENST00000465132 LBX1P52954 281 aa22.13■■□□□ 1.13
CPSF4-209ENST00000465132 RARSP54136 660 aaKnown RBP22.13■■□□□ 1.13
CPSF4-209ENST00000465132 BRPF1P55201 1214 aaPredicted RBP22.13■■□□□ 1.13
CPSF4-209ENST00000465132 SF3B3Q15393 1217 aaKnown RBP22.13■■□□□ 1.13
CPSF4-209ENST00000465132 DUOX1Q9NRD9 1551 aa22.12■■□□□ 1.13
CPSF4-209ENST00000465132 YDJCA8MPS7 323 aa22.12■■□□□ 1.13
CPSF4-209ENST00000465132 CAPNS2Q96L46 248 aa22.12■■□□□ 1.13
CPSF4-209ENST00000465132 BCL2L13Q9BXK5 485 aa22.12■■□□□ 1.13
CPSF4-209ENST00000465132 PTPRCP08575 1304 aa22.11■■□□□ 1.13
CPSF4-209ENST00000465132 HSPA8P11142 646 aaKnown RBP22.11■■□□□ 1.13
CPSF4-209ENST00000465132 ECE1P42892 770 aa22.11■■□□□ 1.13
CPSF4-209ENST00000465132 TRIM28Q13263 835 aaKnown RBP22.11■■□□□ 1.13
CPSF4-209ENST00000465132 SSH1Q8WYL5 1049 aa22.11■■□□□ 1.13
CPSF4-209ENST00000465132 CELF1Q92879 486 aaKnown RBP22.11■■□□□ 1.13
CPSF4-209ENST00000465132 PGAP2Q9UHJ9 254 aa22.11■■□□□ 1.13
CPSF4-209ENST00000465132 RCAN3Q9UKA8 241 aa22.11■■□□□ 1.13
CPSF4-209ENST00000465132 TLL2Q9Y6L7 1015 aa22.11■■□□□ 1.13
CPSF4-209ENST00000465132 DDX60Q8IY21 1712 aaKnown RBP22.11■■□□□ 1.13
CPSF4-209ENST00000465132 TAF1P21675 1872 aa22.11■■□□□ 1.13
CPSF4-209ENST00000465132 LRRC37AA6NMS7 1700 aa22.1■■□□□ 1.13
CPSF4-209ENST00000465132 FLIIQ13045 1269 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms