RNA–Protein interactions for RNA: ENST00000463478.1

HERC4-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-208ENST00000463478 CSRNP1Q96S65 589 aa7.35□□□□□ -1.23
HERC4-208ENST00000463478 SETDB2Q96T68 719 aa7.35□□□□□ -1.23
HERC4-208ENST00000463478 MARK1Q9P0L2 795 aa7.35□□□□□ -1.23
HERC4-208ENST00000463478 GPR25O00155 361 aa7.34□□□□□ -1.23
HERC4-208ENST00000463478 EIF1AYO14602 144 aaKnown RBP7.34□□□□□ -1.23
HERC4-208ENST00000463478 PHACTR2O75167 634 aa7.34□□□□□ -1.23
HERC4-208ENST00000463478 SASH3O75995 380 aa7.34□□□□□ -1.23
HERC4-208ENST00000463478 EGFRP00533 1210 aa7.34□□□□□ -1.23
HERC4-208ENST00000463478 LAMC2Q13753 1193 aa7.34□□□□□ -1.23
HERC4-208ENST00000463478 GRIN2CQ14957 1233 aa7.34□□□□□ -1.23
HERC4-208ENST00000463478 NLRP13Q86W25 1043 aa7.34□□□□□ -1.23
HERC4-208ENST00000463478 TRERF1Q96PN7 1200 aa7.34□□□□□ -1.23
HERC4-208ENST00000463478 PNMA5Q96PV4 448 aa7.34□□□□□ -1.23
HERC4-208ENST00000463478 BCL11AQ9H165 835 aa7.34□□□□□ -1.23
HERC4-208ENST00000463478 NDFIP2Q9NV92 336 aa7.34□□□□□ -1.23
HERC4-208ENST00000463478 ATXN7L1Q9ULK2 861 aaPredicted RBP7.34□□□□□ -1.23
HERC4-208ENST00000463478 CPNE3O75131 537 aaKnown RBP7.33□□□□□ -1.24
HERC4-208ENST00000463478 PRPF40AO75400 957 aaKnown RBP7.33□□□□□ -1.24
HERC4-208ENST00000463478 FGD1P98174 961 aa7.33□□□□□ -1.24
HERC4-208ENST00000463478 CCINQ13939 588 aa7.33□□□□□ -1.24
HERC4-208ENST00000463478 TTC39BQ5VTQ0 682 aaPredicted RBP7.33□□□□□ -1.24
HERC4-208ENST00000463478 FOXR1Q6PIV2 292 aa7.33□□□□□ -1.24
HERC4-208ENST00000463478 VWA5B2Q8N398 1253 aa7.33□□□□□ -1.24
HERC4-208ENST00000463478 DUSP9Q99956 384 aaKnown RBP7.33□□□□□ -1.24
HERC4-208ENST00000463478 GSX2Q9BZM3 304 aa7.33□□□□□ -1.24
HERC4-208ENST00000463478 C11orf16Q9NQ32 467 aa7.33□□□□□ -1.24
HERC4-208ENST00000463478 ABI2Q9NYB9 513 aaPredicted RBP7.33□□□□□ -1.24
HERC4-208ENST00000463478 PHF24Q9UPV7 400 aa7.33□□□□□ -1.24
HERC4-208ENST00000463478 RARAP10276 462 aa7.32□□□□□ -1.24
HERC4-208ENST00000463478 FGFR3P22607 806 aa7.32□□□□□ -1.24
HERC4-208ENST00000463478 TARSP26639 723 aaKnown RBP7.32□□□□□ -1.24
HERC4-208ENST00000463478 VEGFBP49765 207 aa7.32□□□□□ -1.24
HERC4-208ENST00000463478 XPCQ01831 940 aaPredicted RBP7.32□□□□□ -1.24
HERC4-208ENST00000463478 SPEM2Q0P670 501 aa7.32□□□□□ -1.24
HERC4-208ENST00000463478 USPL1Q5W0Q7 1092 aa7.32□□□□□ -1.24
HERC4-208ENST00000463478 ALG1LQ6GMV1 187 aa7.32□□□□□ -1.24
HERC4-208ENST00000463478 SV2AQ7L0J3 742 aa7.32□□□□□ -1.24
HERC4-208ENST00000463478 RAB44Q7Z6P3 723 aaPredicted RBP7.32□□□□□ -1.24
HERC4-208ENST00000463478 IRF7Q92985 503 aa7.32□□□□□ -1.24
HERC4-208ENST00000463478 DNAJC25Q9H1X3 360 aa7.32□□□□□ -1.24
HERC4-208ENST00000463478 HCN2Q9UL51 889 aa7.32□□□□□ -1.24
HERC4-208ENST00000463478 NFKB1P19838 968 aa7.31□□□□□ -1.24
HERC4-208ENST00000463478 C1orf127Q8N9H9 656 aa7.31□□□□□ -1.24
HERC4-208ENST00000463478 BHMTQ93088 406 aa7.31□□□□□ -1.24
HERC4-208ENST00000463478 SLC30A3Q99726 388 aa7.31□□□□□ -1.24
HERC4-208ENST00000463478 ZFYVE28Q9HCC9 887 aa7.31□□□□□ -1.24
HERC4-208ENST00000463478 KIAA1522Q9P206 1035 aaPredicted RBP7.31□□□□□ -1.24
HERC4-208ENST00000463478 CNTN3Q9P232 1028 aa7.31□□□□□ -1.24
HERC4-208ENST00000463478 PARP2Q9UGN5 583 aa7.31□□□□□ -1.24
HERC4-208ENST00000463478 POLR3DP05423 398 aaPredicted RBP7.3□□□□□ -1.24
HERC4-208ENST00000463478 VSIG8P0DPA2 414 aa7.3□□□□□ -1.24
HERC4-208ENST00000463478 FBF1Q8TES7 1133 aa7.3□□□□□ -1.24
HERC4-208ENST00000463478 FAM161BQ96MY7 647 aa7.3□□□□□ -1.24
HERC4-208ENST00000463478 CFHR5Q9BXR6 569 aa7.3□□□□□ -1.24
HERC4-208ENST00000463478 CHRDQ9H2X0 955 aa7.3□□□□□ -1.24
HERC4-208ENST00000463478 RNF19AQ9NV58 838 aa7.3□□□□□ -1.24
HERC4-208ENST00000463478 ZFATQ9P243 1243 aa7.3□□□□□ -1.24
HERC4-208ENST00000463478 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.3□□□□□ -1.24
HERC4-208ENST00000463478 ERBB4Q15303 1308 aa7.29□□□□□ -1.24
HERC4-208ENST00000463478 EREGO14944 169 aa7.29□□□□□ -1.24
HERC4-208ENST00000463478 MMP20O60882 483 aa7.29□□□□□ -1.24
HERC4-208ENST00000463478 CES1P23141 567 aa7.29□□□□□ -1.24
HERC4-208ENST00000463478 INSM1Q01101 510 aaPredicted RBP7.29□□□□□ -1.24
HERC4-208ENST00000463478 PSMD2Q13200 908 aa7.29□□□□□ -1.24
HERC4-208ENST00000463478 CCDC74AQ96AQ1 378 aa7.29□□□□□ -1.24
HERC4-208ENST00000463478 MRS2Q9HD23 443 aa7.29□□□□□ -1.24
HERC4-208ENST00000463478 KANSL3Q9P2N6 904 aa7.29□□□□□ -1.24
HERC4-208ENST00000463478 PHF20L1A8MW92 1017 aa7.28□□□□□ -1.24
HERC4-208ENST00000463478 CYP2E1P05181 493 aaPredicted RBP7.28□□□□□ -1.24
HERC4-208ENST00000463478 IRS1P35568 1242 aa7.28□□□□□ -1.24
HERC4-208ENST00000463478 GMPRP36959 345 aa7.28□□□□□ -1.24
HERC4-208ENST00000463478 CTBSQ01459 385 aa7.28□□□□□ -1.24
HERC4-208ENST00000463478 NEUROD1Q13562 356 aa7.28□□□□□ -1.24
HERC4-208ENST00000463478 FAM182BQ5T319 152 aa7.28□□□□□ -1.24
HERC4-208ENST00000463478 NANOS1Q8WY41 292 aaKnown RBP7.28□□□□□ -1.24
HERC4-208ENST00000463478 NPHS2Q9NP85 383 aa7.28□□□□□ -1.24
HERC4-208ENST00000463478 NLRP2Q9NX02 1062 aa7.28□□□□□ -1.24
HERC4-208ENST00000463478 PRR12Q9ULL5 1215 aa7.28□□□□□ -1.24
HERC4-208ENST00000463478 PSAPP07602 524 aa7.27□□□□□ -1.25
HERC4-208ENST00000463478 DAB2P98082 770 aa7.27□□□□□ -1.25
HERC4-208ENST00000463478 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.27□□□□□ -1.25
HERC4-208ENST00000463478 PI16Q6UXB8 463 aa7.27□□□□□ -1.25
HERC4-208ENST00000463478 TMC4Q7Z404 712 aa7.27□□□□□ -1.25
HERC4-208ENST00000463478 OR13H1Q8NG92 308 aa7.27□□□□□ -1.25
HERC4-208ENST00000463478 EPS8L3Q8TE67 593 aaKnown RBP7.27□□□□□ -1.25
HERC4-208ENST00000463478 PMEPA1Q969W9 287 aa7.27□□□□□ -1.25
HERC4-208ENST00000463478 STK17AQ9UEE5 414 aa7.27□□□□□ -1.25
HERC4-208ENST00000463478 SORBS3O60504 671 aa7.26□□□□□ -1.25
HERC4-208ENST00000463478 BMP4P12644 408 aa7.26□□□□□ -1.25
HERC4-208ENST00000463478 GNA15P30679 374 aa7.26□□□□□ -1.25
HERC4-208ENST00000463478 TBC1D8BQ0IIM8 1120 aa7.26□□□□□ -1.25
HERC4-208ENST00000463478 TSNAXIP1Q2TAA8 658 aa7.26□□□□□ -1.25
HERC4-208ENST00000463478 DHX32Q7L7V1 743 aaKnown RBP7.26□□□□□ -1.25
HERC4-208ENST00000463478 GALNT12Q8IXK2 581 aa7.26□□□□□ -1.25
HERC4-208ENST00000463478 EFCC1Q9HA90 598 aa7.26□□□□□ -1.25
HERC4-208ENST00000463478 TLR7Q9NYK1 1049 aaKnown RBP7.26□□□□□ -1.25
HERC4-208ENST00000463478 VTI1BQ9UEU0 232 aa7.26□□□□□ -1.25
HERC4-208ENST00000463478 SPG7Q9UQ90 795 aa7.26□□□□□ -1.25
HERC4-208ENST00000463478 GADD45BO75293 160 aaPredicted RBP7.25□□□□□ -1.25
HERC4-208ENST00000463478 MX2P20592 715 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms