RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 PERM1Q5SV97 790 aa8.35□□□□□ -1.07
USH2A-203ENST00000463147 LARP1Q6PKG0 1096 aaKnown RBP8.35□□□□□ -1.07
USH2A-203ENST00000463147 MAP4K3Q8IVH8 894 aa8.35□□□□□ -1.07
USH2A-203ENST00000463147 UCN2Q96RP3 112 aa8.35□□□□□ -1.07
USH2A-203ENST00000463147 MRPL18Q9H0U6 180 aaKnown RBP8.35□□□□□ -1.07
USH2A-203ENST00000463147 AKTIPQ9H8T0 292 aa8.35□□□□□ -1.07
USH2A-203ENST00000463147 GSC2O15499 205 aa8.34□□□□□ -1.07
USH2A-203ENST00000463147 RARAP10276 462 aa8.34□□□□□ -1.07
USH2A-203ENST00000463147 UBTFP17480 764 aaKnown RBP8.34□□□□□ -1.07
USH2A-203ENST00000463147 INPP5BP32019 993 aa8.34□□□□□ -1.07
USH2A-203ENST00000463147 TXKP42681 527 aa8.34□□□□□ -1.07
USH2A-203ENST00000463147 IDH3AP50213 366 aa8.34□□□□□ -1.07
USH2A-203ENST00000463147 TMEM130Q8N3G9 435 aa8.34□□□□□ -1.07
USH2A-203ENST00000463147 HINFPQ9BQA5 517 aa8.34□□□□□ -1.07
USH2A-203ENST00000463147 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.34□□□□□ -1.07
USH2A-203ENST00000463147 COL17A1Q9UMD9 1497 aaPredicted RBP8.33□□□□□ -1.08
USH2A-203ENST00000463147 NRLP54845 237 aa8.33□□□□□ -1.08
USH2A-203ENST00000463147 DZIP1LQ8IYY4 767 aaKnown RBP8.33□□□□□ -1.08
USH2A-203ENST00000463147 CACTIN-AS1Q8N1I8 211 aa8.33□□□□□ -1.08
USH2A-203ENST00000463147 ADAMTS19Q8TE59 1207 aa8.33□□□□□ -1.08
USH2A-203ENST00000463147 POM121Q96HA1 1249 aa8.33□□□□□ -1.08
USH2A-203ENST00000463147 MEGF10Q96KG7 1140 aa8.33□□□□□ -1.08
USH2A-203ENST00000463147 POM121CA8CG34 1229 aa8.32□□□□□ -1.08
USH2A-203ENST00000463147 DLL1O00548 723 aa8.32□□□□□ -1.08
USH2A-203ENST00000463147 PTCD1O75127 700 aaKnown RBP8.32□□□□□ -1.08
USH2A-203ENST00000463147 RBSNQ9H1K0 784 aa8.32□□□□□ -1.08
USH2A-203ENST00000463147 BCS1LQ9Y276 419 aa8.32□□□□□ -1.08
USH2A-203ENST00000463147 FSTP19883 344 aa8.31□□□□□ -1.08
USH2A-203ENST00000463147 SMG9Q9H0W8 520 aaKnown RBP8.31□□□□□ -1.08
USH2A-203ENST00000463147 ZBTB42B2RXF5 422 aa8.3□□□□□ -1.08
USH2A-203ENST00000463147 KRT25Q7Z3Z0 450 aa8.3□□□□□ -1.08
USH2A-203ENST00000463147 VTI1AQ96AJ9 217 aa8.3□□□□□ -1.08
USH2A-203ENST00000463147 IFT43Q96FT9 208 aa8.3□□□□□ -1.08
USH2A-203ENST00000463147 MUC3BQ9H195 1237 aa8.3□□□□□ -1.08
USH2A-203ENST00000463147 ZFATQ9P243 1243 aa8.3□□□□□ -1.08
USH2A-203ENST00000463147 DEAF1O75398 565 aaPredicted RBP8.29□□□□□ -1.08
USH2A-203ENST00000463147 EIF2AK2P19525 551 aaKnown RBP8.29□□□□□ -1.08
USH2A-203ENST00000463147 TARSP26639 723 aaKnown RBP8.29□□□□□ -1.08
USH2A-203ENST00000463147 C11orf91Q3C1V1 193 aa8.29□□□□□ -1.08
USH2A-203ENST00000463147 KRTAP9-9Q9BYP9 154 aa8.29□□□□□ -1.08
USH2A-203ENST00000463147 KRTAP9-4Q9BYQ2 154 aa8.29□□□□□ -1.08
USH2A-203ENST00000463147 TLR7Q9NYK1 1049 aaKnown RBP8.29□□□□□ -1.08
USH2A-203ENST00000463147 FOXO3O43524 673 aa8.28□□□□□ -1.08
USH2A-203ENST00000463147 SASH3O75995 380 aa8.28□□□□□ -1.08
USH2A-203ENST00000463147 MICAL2O94851 1124 aa8.28□□□□□ -1.08
USH2A-203ENST00000463147 EGFRP00533 1210 aa8.28□□□□□ -1.08
USH2A-203ENST00000463147 GHRHP01286 108 aa8.28□□□□□ -1.08
USH2A-203ENST00000463147 PLAURQ03405 335 aa8.28□□□□□ -1.08
USH2A-203ENST00000463147 F8W735 103 aaPredicted RBP8.27□□□□□ -1.09
USH2A-203ENST00000463147 PSAPP07602 524 aa8.27□□□□□ -1.09
USH2A-203ENST00000463147 IRAK1P51617 712 aa8.27□□□□□ -1.09
USH2A-203ENST00000463147 MLLT1Q03111 559 aaPredicted RBP8.27□□□□□ -1.09
USH2A-203ENST00000463147 DGKZQ13574 1117 aa8.27□□□□□ -1.09
USH2A-203ENST00000463147 KRTAP19-1Q8IUB9 90 aa8.27□□□□□ -1.09
USH2A-203ENST00000463147 MYO19Q96H55 970 aa8.27□□□□□ -1.09
USH2A-203ENST00000463147 KLK14Q9P0G3 267 aa8.27□□□□□ -1.09
USH2A-203ENST00000463147 MAFBQ9Y5Q3 323 aaPredicted RBP8.27□□□□□ -1.09
USH2A-203ENST00000463147 GRNP28799 593 aaKnown RBP8.26□□□□□ -1.09
USH2A-203ENST00000463147 CD97P48960 835 aa8.26□□□□□ -1.09
USH2A-203ENST00000463147 PLD4Q96BZ4 506 aa8.26□□□□□ -1.09
USH2A-203ENST00000463147 TFIP11Q9UBB9 837 aaKnown RBP8.26□□□□□ -1.09
USH2A-203ENST00000463147 RAXQ9Y2V3 346 aa8.26□□□□□ -1.09
USH2A-203ENST00000463147 LOC102724428A0A0B4J2F2 783 aa8.25□□□□□ -1.09
USH2A-203ENST00000463147 FAM196BA6NMK8 535 aa8.25□□□□□ -1.09
USH2A-203ENST00000463147 COBLO75128 1261 aa8.25□□□□□ -1.09
USH2A-203ENST00000463147 YBX3P16989 372 aaKnown RBP eCLIP8.25□□□□□ -1.09
USH2A-203ENST00000463147 SOX18P35713 384 aa8.25□□□□□ -1.09
USH2A-203ENST00000463147 SIK1P57059 783 aa8.25□□□□□ -1.09
USH2A-203ENST00000463147 DPYDQ12882 1025 aa8.25□□□□□ -1.09
USH2A-203ENST00000463147 PTK7Q13308 1070 aa8.25□□□□□ -1.09
USH2A-203ENST00000463147 Q6ZS46 218 aa8.25□□□□□ -1.09
USH2A-203ENST00000463147 HOXD8P13378 290 aaPredicted RBP8.24□□□□□ -1.09
USH2A-203ENST00000463147 SSTR4P31391 388 aa8.24□□□□□ -1.09
USH2A-203ENST00000463147 ANKMY2Q8IV38 441 aa8.24□□□□□ -1.09
USH2A-203ENST00000463147 IL22RA1Q8N6P7 574 aa8.24□□□□□ -1.09
USH2A-203ENST00000463147 FMNL2Q96PY5 1086 aa8.24□□□□□ -1.09
USH2A-203ENST00000463147 RTCBQ9Y3I0 505 aaKnown RBP8.24□□□□□ -1.09
USH2A-203ENST00000463147 IGLV1-40P01703 118 aa8.23□□□□□ -1.09
USH2A-203ENST00000463147 HFE2Q6ZVN8 426 aa8.23□□□□□ -1.09
USH2A-203ENST00000463147 CEP41Q9BYV8 373 aa8.23□□□□□ -1.09
USH2A-203ENST00000463147 XYLBO75191 536 aa8.22□□□□□ -1.09
USH2A-203ENST00000463147 GRIK1P39086 918 aa8.22□□□□□ -1.09
USH2A-203ENST00000463147 GDF6Q6KF10 455 aaPredicted RBP8.22□□□□□ -1.09
USH2A-203ENST00000463147 INTS5Q6P9B9 1019 aaKnown RBP8.22□□□□□ -1.09
USH2A-203ENST00000463147 QTRT2Q9H974 415 aaKnown RBP8.22□□□□□ -1.09
USH2A-203ENST00000463147 STOML1Q9UBI4 398 aa8.22□□□□□ -1.09
USH2A-203ENST00000463147 KIAA1324LA8MWY0 1029 aaPredicted RBP8.21□□□□□ -1.1
USH2A-203ENST00000463147 USP17L15C9J2P7 530 aa8.21□□□□□ -1.1
USH2A-203ENST00000463147 USP17L10C9JJH3 530 aa8.21□□□□□ -1.1
USH2A-203ENST00000463147 USP17L13C9JLJ4 530 aa8.21□□□□□ -1.1
USH2A-203ENST00000463147 USP17L12C9JPN9 530 aa8.21□□□□□ -1.1
USH2A-203ENST00000463147 USP17L11C9JVI0 530 aa8.21□□□□□ -1.1
USH2A-203ENST00000463147 USP17L21D6R901 530 aa8.21□□□□□ -1.1
USH2A-203ENST00000463147 USP17L18D6R9N7 530 aa8.21□□□□□ -1.1
USH2A-203ENST00000463147 USP17L22D6RA61 530 aa8.21□□□□□ -1.1
USH2A-203ENST00000463147 USP17L17D6RBQ6 530 aa8.21□□□□□ -1.1
USH2A-203ENST00000463147 USP17L19D6RCP7 530 aa8.21□□□□□ -1.1
USH2A-203ENST00000463147 USP17L20D6RJB6 530 aa8.21□□□□□ -1.1
USH2A-203ENST00000463147 DHX15O43143 795 aaKnown RBP8.21□□□□□ -1.1
USH2A-203ENST00000463147 ALX3O95076 343 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms