RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 AKAP4Q5JQC9 854 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 NUTM2FA1L443 756 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 RRS1Q15050 365 aaKnown RBP8.14□□□□□ -1.11
SYNE1-216ENST00000461872 NUTM2GQ5VZR2 741 aa8.14□□□□□ -1.11
SYNE1-216ENST00000461872 ZBTB7CA1YPR0 619 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 GTF2E1P29083 439 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-216ENST00000461872 MICALCLQ6ZW33 695 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 DEF6Q9H4E7 631 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 RMND1Q9NWS8 449 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 CCDC102BQ68D86 513 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 FMNL3Q8IVF7 1028 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 NOC3LQ8WTT2 800 aaKnown RBP8.13□□□□□ -1.11
SYNE1-216ENST00000461872 MAGEC2Q9UBF1 373 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-216ENST00000461872 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.13□□□□□ -1.11
SYNE1-216ENST00000461872 PSDA5PKW4 1024 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-216ENST00000461872 ATP10DQ9P241 1426 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 CLSTN1O94985 981 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 TBX22Q9Y458 520 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 DMRT2Q9Y5R5 561 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 TPRNQ4KMQ1 711 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 TECPR2O15040 1411 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 CCDC178Q5BJE1 867 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 FAM114A1Q8IWE2 563 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 SKAP1Q86WV1 359 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 C16orf45Q96MC5 204 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-216ENST00000461872 SHPRHQ149N8 1683 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 ACEP12821 1306 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 GOLGA6L10A6NI86 522 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 RAPGEF3O95398 923 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 MTX1Q13505 466 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 CFAP100Q494V2 611 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 LMOD2Q6P5Q4 547 aa8.13□□□□□ -1.11
SYNE1-216ENST00000461872 AK2P54819 239 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 DHX32Q7L7V1 743 aaKnown RBP8.12□□□□□ -1.11
SYNE1-216ENST00000461872 TRHP20396 242 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-216ENST00000461872 IL15P40933 162 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-216ENST00000461872 MCMDC2Q4G0Z9 681 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 MAP2P11137 1827 aaKnown RBP8.12□□□□□ -1.11
SYNE1-216ENST00000461872 GRM8O00222 908 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 CCDC57Q2TAC2 916 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 AEBP2Q6ZN18 517 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-216ENST00000461872 CAGE1Q8TC20 777 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 CCDC51Q96ER9 411 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 MKRN1Q9UHC7 482 aaKnown RBP8.12□□□□□ -1.11
SYNE1-216ENST00000461872 OVOS2A0A0G2JMS6 1433 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 ZNF75DP51815 510 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 SARM1Q6SZW1 724 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 ARHGAP6O43182 974 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 YEATS4O95619 227 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 PHACTR3Q96KR7 559 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 GOLGA6L7A0A1B0GV03 622 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 SEMA3FQ13275 785 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 ANO6Q4KMQ2 910 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 IL17RAQ96F46 866 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 KIAA0754O94854 1291 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 DMTNQ08495 405 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 FOXD4L6Q3SYB3 417 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-216ENST00000461872 FOXD4L3Q6VB84 417 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-216ENST00000461872 FSIP1Q8NA03 581 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 AK9Q5TCS8 1911 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 KDRP35968 1356 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 ZNF287Q9HBT7 754 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 CNPY2Q9Y2B0 182 aa8.12□□□□□ -1.11
SYNE1-216ENST00000461872 GSPT1P15170 499 aaKnown RBP8.11□□□□□ -1.11
SYNE1-216ENST00000461872 CNGA4Q8IV77 575 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 TRIML1Q8N9V2 468 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 ALKQ9UM73 1620 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 CASQ1P31415 396 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 LRRC27Q9C0I9 530 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 NCOA7Q8NI08 942 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 TMEM63CQ9P1W3 806 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 ERLIN2O94905 339 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 KIF6Q6ZMV9 814 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 CRACR2AQ9BSW2 395 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 DNAI1Q9UI46 699 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 RBM8AQ9Y5S9 174 aaKnown RBP8.11□□□□□ -1.11
SYNE1-216ENST00000461872 GNAT2P19087 354 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 SPATS2Q86XZ4 545 aaKnown RBP8.11□□□□□ -1.11
SYNE1-216ENST00000461872 THUMPD2Q9BTF0 503 aaKnown RBP8.11□□□□□ -1.11
SYNE1-216ENST00000461872 PTPRUQ92729 1446 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 CCDC175P0C221 793 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 RDXP35241 583 aaKnown RBP8.11□□□□□ -1.11
SYNE1-216ENST00000461872 CREB3L3Q68CJ9 461 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 CCAR2Q8N163 923 aaKnown RBP8.11□□□□□ -1.11
SYNE1-216ENST00000461872 DACT1Q9NYF0 836 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 COL3A1P02461 1466 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-216ENST00000461872 WASHC4Q2M389 1173 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 ZSWIM6Q9HCJ5 1215 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 MYO1AQ9UBC5 1043 aa8.11□□□□□ -1.11
SYNE1-216ENST00000461872 RPS6KB1P23443 525 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 IL1RAPL2Q9NP60 686 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 USP42Q9H9J4 1324 aaKnown RBP8.1□□□□□ -1.11
SYNE1-216ENST00000461872 PTPRMP28827 1452 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 GOLGA1Q92805 767 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 USP31Q70CQ4 1352 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 ZGPATQ8N5A5 531 aaKnown RBP8.1□□□□□ -1.11
SYNE1-216ENST00000461872 GPR108Q9NPR9 543 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 ABCC12Q96J65 1359 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 TMEM2Q9UHN6 1383 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 SHTN1A0MZ66 631 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms