RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 TAF3Q5VWG9 929 aa10.1□□□□□ -0.79
VPS50-208ENST00000458707 RBM43Q6ZSC3 357 aaKnown RBP10.1□□□□□ -0.79
VPS50-208ENST00000458707 TTC6Q86TZ1 520 aa10.1□□□□□ -0.79
VPS50-208ENST00000458707 DNAAF4Q8WXU2 420 aa10.1□□□□□ -0.79
VPS50-208ENST00000458707 TSC1Q92574 1164 aa10.1□□□□□ -0.79
VPS50-208ENST00000458707 JAKMIP1Q96N16 626 aaKnown RBP10.1□□□□□ -0.79
VPS50-208ENST00000458707 LARP6Q9BRS8 491 aaKnown RBP10.1□□□□□ -0.79
VPS50-208ENST00000458707 ADCY9O60503 1353 aa10.1□□□□□ -0.79
VPS50-208ENST00000458707 KRT85P78386 507 aa10.09□□□□□ -0.79
VPS50-208ENST00000458707 CHAF1AQ13111 956 aaPredicted RBP10.09□□□□□ -0.79
VPS50-208ENST00000458707 MAP3K11Q16584 847 aa10.09□□□□□ -0.79
VPS50-208ENST00000458707 ECHDC1Q9NTX5 307 aa10.09□□□□□ -0.79
VPS50-208ENST00000458707 MRVI1Q9Y6F6 885 aa10.09□□□□□ -0.79
VPS50-208ENST00000458707 JCADQ9P266 1359 aa10.09□□□□□ -0.79
VPS50-208ENST00000458707 RIOK3O14730 519 aaKnown RBP10.08□□□□□ -0.8
VPS50-208ENST00000458707 PDCP20941 246 aa10.08□□□□□ -0.8
VPS50-208ENST00000458707 EIF4A1P60842 406 aaKnown RBP10.08□□□□□ -0.8
VPS50-208ENST00000458707 SYCP1Q15431 976 aa10.08□□□□□ -0.8
VPS50-208ENST00000458707 PRPF40BQ6NWY9 871 aaKnown RBP10.08□□□□□ -0.8
VPS50-208ENST00000458707 CLASRPQ8N2M8 674 aaKnown RBP10.08□□□□□ -0.8
VPS50-208ENST00000458707 MAP4K1Q92918 833 aa10.08□□□□□ -0.8
VPS50-208ENST00000458707 EVI5LQ96CN4 794 aa10.08□□□□□ -0.8
VPS50-208ENST00000458707 NUP62CLQ9H1M0 184 aa10.08□□□□□ -0.8
VPS50-208ENST00000458707 OCEL1Q9H607 264 aa10.08□□□□□ -0.8
VPS50-208ENST00000458707 NPHP4O75161 1426 aaPredicted RBP10.08□□□□□ -0.8
VPS50-208ENST00000458707 MRC1P22897 1456 aa10.08□□□□□ -0.8
VPS50-208ENST00000458707 ARHGAP23Q9P227 1491 aa10.08□□□□□ -0.8
VPS50-208ENST00000458707 ADAMTS7Q9UKP4 1686 aa10.08□□□□□ -0.8
VPS50-208ENST00000458707 VPS37CA5D8V6 355 aaPredicted RBP10.08□□□□□ -0.8
VPS50-208ENST00000458707 HIP1O00291 1037 aa10.08□□□□□ -0.8
VPS50-208ENST00000458707 ZKSCAN1P17029 563 aaPredicted RBP10.08□□□□□ -0.8
VPS50-208ENST00000458707 LTKP29376 864 aa10.08□□□□□ -0.8
VPS50-208ENST00000458707 HSPA1LP34931 641 aa10.08□□□□□ -0.8
VPS50-208ENST00000458707 TYRO3Q06418 890 aa10.08□□□□□ -0.8
VPS50-208ENST00000458707 PPP4R3BQ5MIZ7 849 aa10.08□□□□□ -0.8
VPS50-208ENST00000458707 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.08□□□□□ -0.8
VPS50-208ENST00000458707 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.08□□□□□ -0.8
VPS50-208ENST00000458707 ERC1Q8IUD2 1116 aa10.08□□□□□ -0.8
VPS50-208ENST00000458707 GPATCH3Q96I76 525 aa10.08□□□□□ -0.8
VPS50-208ENST00000458707 GTPBP4Q9BZE4 634 aaKnown RBP10.08□□□□□ -0.8
VPS50-208ENST00000458707 TPCN1Q9ULQ1 816 aa10.08□□□□□ -0.8
VPS50-208ENST00000458707 LTBP4Q8N2S1 1624 aa10.07□□□□□ -0.8
VPS50-208ENST00000458707 PI4KAP2A4QPH2 592 aa10.07□□□□□ -0.8
VPS50-208ENST00000458707 PSMA5P28066 241 aa10.07□□□□□ -0.8
VPS50-208ENST00000458707 LARP1BQ659C4 914 aaKnown RBP10.07□□□□□ -0.8
VPS50-208ENST00000458707 CREB3L3Q68CJ9 461 aa10.07□□□□□ -0.8
VPS50-208ENST00000458707 PI4KAP1Q8N8J0 262 aa10.07□□□□□ -0.8
VPS50-208ENST00000458707 NGDNQ8NEJ9 315 aaKnown RBP10.07□□□□□ -0.8
VPS50-208ENST00000458707 ARID3AQ99856 593 aa10.07□□□□□ -0.8
VPS50-208ENST00000458707 SCAND2PQ9GZW5 306 aaPredicted RBP10.07□□□□□ -0.8
VPS50-208ENST00000458707 CHPF2Q9P2E5 772 aa10.07□□□□□ -0.8
VPS50-208ENST00000458707 RBM8AQ9Y5S9 174 aaKnown RBP10.07□□□□□ -0.8
VPS50-208ENST00000458707 NPHP3Q7Z494 1330 aa10.07□□□□□ -0.8
VPS50-208ENST00000458707 NFAT5O94916 1531 aa10.07□□□□□ -0.8
VPS50-208ENST00000458707 ZBTB7CA1YPR0 619 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 CLGNO14967 610 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 ALDH1L1O75891 902 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 LIG1P18858 919 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 PLCB2Q00722 1185 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 ANKRD1Q15327 319 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 ATP2B3Q16720 1220 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 CDC37L1Q7L3B6 337 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 PLA2G4DQ86XP0 818 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 PDCL2Q8N4E4 241 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 SPC24Q8NBT2 197 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 TDRD7Q8NHU6 1098 aaKnown RBP10.06□□□□□ -0.8
VPS50-208ENST00000458707 ESF1Q9H501 851 aaKnown RBP10.06□□□□□ -0.8
VPS50-208ENST00000458707 DDX19AQ9NUU7 478 aaKnown RBP10.06□□□□□ -0.8
VPS50-208ENST00000458707 OVOS2A0A0G2JMS6 1433 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 CAMTA1Q9Y6Y1 1673 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 AFDNP55196 1824 aaKnown RBP10.06□□□□□ -0.8
VPS50-208ENST00000458707 GIGYF1O75420 1035 aaPredicted RBP10.06□□□□□ -0.8
VPS50-208ENST00000458707 PTGS1P23219 599 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 NLRP6P59044 892 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 TSGA10IPQ3SY00 556 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 NECAB1Q8N987 351 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 TMEM121BQ9BXQ6 578 aaPredicted RBP10.06□□□□□ -0.8
VPS50-208ENST00000458707 PRDM10Q9NQV6 1147 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 MED23Q9ULK4 1368 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 HDAC5Q9UQL6 1122 aa10.06□□□□□ -0.8
VPS50-208ENST00000458707 SLC27A2O14975 620 aa10.05□□□□□ -0.8
VPS50-208ENST00000458707 CAVIN2O95810 425 aa10.05□□□□□ -0.8
VPS50-208ENST00000458707 SLC20A2Q08357 652 aa10.05□□□□□ -0.8
VPS50-208ENST00000458707 OS9Q13438 667 aaPredicted RBP10.05□□□□□ -0.8
VPS50-208ENST00000458707 TPRNQ4KMQ1 711 aa10.05□□□□□ -0.8
VPS50-208ENST00000458707 LUZP1Q86V48 1076 aa10.05□□□□□ -0.8
VPS50-208ENST00000458707 TNMDQ9H2S6 317 aa10.05□□□□□ -0.8
VPS50-208ENST00000458707 CLSTN2Q9H4D0 955 aa10.05□□□□□ -0.8
VPS50-208ENST00000458707 CBX8Q9HC52 389 aa10.05□□□□□ -0.8
VPS50-208ENST00000458707 AMOTL2Q9Y2J4 779 aa10.05□□□□□ -0.8
VPS50-208ENST00000458707 NCAPD2Q15021 1401 aa10.05□□□□□ -0.8
VPS50-208ENST00000458707 HEG1Q9ULI3 1381 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 UTYO14607 1347 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 FAM177BA6PVY3 158 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 SMTNL1A8MU46 457 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 IFIT2P09913 472 aaKnown RBP10.04□□□□□ -0.8
VPS50-208ENST00000458707 EIF2S2P20042 333 aaKnown RBP10.04□□□□□ -0.8
VPS50-208ENST00000458707 CDC25BP30305 580 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 ZNF75DP51815 510 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 ANO6Q4KMQ2 910 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms