RNA–Protein interactions for RNA: ENST00000458530.1

VPS50-207, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 667 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-207ENST00000458530 ATG3Q9NT62 314 aa11.15□□□□□ -0.62
VPS50-207ENST00000458530 COL5A3P25940 1745 aaPredicted RBP11.15□□□□□ -0.63
VPS50-207ENST00000458530 PRAMEF22A3QJZ6 481 aa11.14□□□□□ -0.63
VPS50-207ENST00000458530 MYL6BP14649 208 aa11.14□□□□□ -0.63
VPS50-207ENST00000458530 ATP6V1AP38606 617 aa11.14□□□□□ -0.63
VPS50-207ENST00000458530 PSEN1P49768 467 aa11.14□□□□□ -0.63
VPS50-207ENST00000458530 PDIA6Q15084 440 aa11.14□□□□□ -0.63
VPS50-207ENST00000458530 SMC5Q8IY18 1101 aa11.14□□□□□ -0.63
VPS50-207ENST00000458530 LINS1Q8NG48 757 aa11.14□□□□□ -0.63
VPS50-207ENST00000458530 ARHGEF1Q92888 912 aaKnown RBP11.14□□□□□ -0.63
VPS50-207ENST00000458530 MEIS3Q99687 375 aa11.14□□□□□ -0.63
VPS50-207ENST00000458530 CCDC87Q9NVE4 849 aa11.14□□□□□ -0.63
VPS50-207ENST00000458530 MAP3K2Q9Y2U5 619 aa11.14□□□□□ -0.63
VPS50-207ENST00000458530 USP16Q9Y5T5 823 aa11.14□□□□□ -0.63
VPS50-207ENST00000458530 CNTNAP4Q9C0A0 1308 aa11.13□□□□□ -0.63
VPS50-207ENST00000458530 ZC3H4Q9UPT8 1303 aaKnown RBP11.13□□□□□ -0.63
VPS50-207ENST00000458530 ANXA1P04083 346 aa11.13□□□□□ -0.63
VPS50-207ENST00000458530 PROSER3Q2NL68 480 aa11.13□□□□□ -0.63
VPS50-207ENST00000458530 TRAPPC3LQ5T215 181 aa11.13□□□□□ -0.63
VPS50-207ENST00000458530 BEND3Q5T5X7 828 aa11.13□□□□□ -0.63
VPS50-207ENST00000458530 IER5LQ5T953 404 aa11.13□□□□□ -0.63
VPS50-207ENST00000458530 NPM2Q86SE8 214 aaKnown RBP11.13□□□□□ -0.63
VPS50-207ENST00000458530 SMC1BQ8NDV3 1235 aa11.13□□□□□ -0.63
VPS50-207ENST00000458530 PLBD2Q8NHP8 589 aa11.13□□□□□ -0.63
VPS50-207ENST00000458530 XAGE3Q8WTP9 111 aa11.13□□□□□ -0.63
VPS50-207ENST00000458530 SBF1O95248 1867 aa11.12□□□□□ -0.63
VPS50-207ENST00000458530 RPS6KA4O75676 772 aa11.12□□□□□ -0.63
VPS50-207ENST00000458530 AIMP1Q12904 312 aaKnown RBP11.12□□□□□ -0.63
VPS50-207ENST00000458530 CEP85Q6P2H3 762 aa11.12□□□□□ -0.63
VPS50-207ENST00000458530 ANKRD13DQ6ZTN6 518 aa11.12□□□□□ -0.63
VPS50-207ENST00000458530 COPS6Q7L5N1 327 aa11.12□□□□□ -0.63
VPS50-207ENST00000458530 C16orf71Q8IYS4 520 aaPredicted RBP11.12□□□□□ -0.63
VPS50-207ENST00000458530 C1orf115Q9H7X2 142 aa11.12□□□□□ -0.63
VPS50-207ENST00000458530 C9orf78Q9NZ63 289 aaPredicted RBP11.12□□□□□ -0.63
VPS50-207ENST00000458530 PIM2Q9P1W9 311 aa11.12□□□□□ -0.63
VPS50-207ENST00000458530 RTCBQ9Y3I0 505 aaKnown RBP11.12□□□□□ -0.63
VPS50-207ENST00000458530 MYH14Q7Z406 1995 aaKnown RBP11.12□□□□□ -0.63
VPS50-207ENST00000458530 KIF6Q6ZMV9 814 aa11.11□□□□□ -0.63
VPS50-207ENST00000458530 METTL22Q9BUU2 404 aaPredicted RBP11.11□□□□□ -0.63
VPS50-207ENST00000458530 RRAGCQ9HB90 399 aa11.11□□□□□ -0.63
VPS50-207ENST00000458530 PDZRN3Q9UPQ7 1066 aa11.11□□□□□ -0.63
VPS50-207ENST00000458530 NUP98P52948 1817 aa11.11□□□□□ -0.63
VPS50-207ENST00000458530 SLC34A2O95436 690 aa11.1□□□□□ -0.63
VPS50-207ENST00000458530 HSPA1AP0DMV8 641 aaKnown RBP11.1□□□□□ -0.63
VPS50-207ENST00000458530 HSPA1BP0DMV9 641 aaKnown RBP11.1□□□□□ -0.63
VPS50-207ENST00000458530 RGS3P49796 1198 aa11.1□□□□□ -0.63
VPS50-207ENST00000458530 IRX5P78411 483 aaPredicted RBP11.1□□□□□ -0.63
VPS50-207ENST00000458530 DALRD3Q5D0E6 543 aaKnown RBP11.1□□□□□ -0.63
VPS50-207ENST00000458530 DNAJC10Q8IXB1 793 aa11.1□□□□□ -0.63
VPS50-207ENST00000458530 USP44Q9H0E7 712 aa11.1□□□□□ -0.63
VPS50-207ENST00000458530 RNF181Q9P0P0 153 aa11.1□□□□□ -0.63
VPS50-207ENST00000458530 MYH3P11055 1940 aa11.09□□□□□ -0.63
VPS50-207ENST00000458530 GRM8O00222 908 aa11.09□□□□□ -0.63
VPS50-207ENST00000458530 NUCB1Q02818 461 aa11.09□□□□□ -0.63
VPS50-207ENST00000458530 DDR1Q08345 913 aa11.09□□□□□ -0.63
VPS50-207ENST00000458530 LRP10Q7Z4F1 713 aa11.09□□□□□ -0.63
VPS50-207ENST00000458530 DCTPP1Q9H773 170 aa11.09□□□□□ -0.63
VPS50-207ENST00000458530 LRRFIP2Q9Y608 721 aaKnown RBP11.09□□□□□ -0.63
VPS50-207ENST00000458530 PARP3Q9Y6F1 533 aa11.09□□□□□ -0.63
VPS50-207ENST00000458530 UTYO14607 1347 aa11.09□□□□□ -0.63
VPS50-207ENST00000458530 BCORQ6W2J9 1755 aa11.08□□□□□ -0.64
VPS50-207ENST00000458530 COL15A1P39059 1388 aa11.08□□□□□ -0.64
VPS50-207ENST00000458530 NBPF26B4DH59 902 aa11.08□□□□□ -0.64
VPS50-207ENST00000458530 A1BGP04217 495 aa11.08□□□□□ -0.64
VPS50-207ENST00000458530 CYP19A1P11511 503 aaPredicted RBP11.08□□□□□ -0.64
VPS50-207ENST00000458530 PLCG2P16885 1265 aa11.08□□□□□ -0.64
VPS50-207ENST00000458530 ATP8B2P98198 1209 aa11.08□□□□□ -0.64
VPS50-207ENST00000458530 PDAP1Q13442 181 aaKnown RBP11.08□□□□□ -0.64
VPS50-207ENST00000458530 HSP90AB4PQ58FF6 505 aa11.08□□□□□ -0.64
VPS50-207ENST00000458530 HSP90AB3PQ58FF7 597 aa11.08□□□□□ -0.64
VPS50-207ENST00000458530 NBPF10Q6P3W6 841 aaKnown RBP11.08□□□□□ -0.64
VPS50-207ENST00000458530 CHD1LQ86WJ1 897 aa11.08□□□□□ -0.64
VPS50-207ENST00000458530 NBPF15Q8N660 670 aa11.08□□□□□ -0.64
VPS50-207ENST00000458530 MYD88Q99836 296 aa11.08□□□□□ -0.64
VPS50-207ENST00000458530 TSHZ2Q9NRE2 1034 aa11.08□□□□□ -0.64
VPS50-207ENST00000458530 USP42Q9H9J4 1324 aaKnown RBP11.08□□□□□ -0.64
VPS50-207ENST00000458530 GLTPD2A6NH11 291 aa11.07□□□□□ -0.64
VPS50-207ENST00000458530 NEURL1BA8MQ27 555 aa11.07□□□□□ -0.64
VPS50-207ENST00000458530 POTECB2RU33 542 aa11.07□□□□□ -0.64
VPS50-207ENST00000458530 TM4SF1P30408 202 aa11.07□□□□□ -0.64
VPS50-207ENST00000458530 RFC4P35249 363 aa11.07□□□□□ -0.64
VPS50-207ENST00000458530 IL6STP40189 918 aaPredicted RBP11.07□□□□□ -0.64
VPS50-207ENST00000458530 ANKRD45Q5TZF3 282 aa11.07□□□□□ -0.64
VPS50-207ENST00000458530 SIRT2Q8IXJ6 389 aa11.07□□□□□ -0.64
VPS50-207ENST00000458530 RNF25Q96BH1 459 aaPredicted RBP11.07□□□□□ -0.64
VPS50-207ENST00000458530 POLRMTO00411 1230 aaKnown RBP11.06□□□□□ -0.64
VPS50-207ENST00000458530 VEGFAP15692 232 aaPredicted RBP11.06□□□□□ -0.64
VPS50-207ENST00000458530 CHRNA5P30532 468 aa11.06□□□□□ -0.64
VPS50-207ENST00000458530 MTX1Q13505 466 aa11.06□□□□□ -0.64
VPS50-207ENST00000458530 GCKRQ14397 625 aa11.06□□□□□ -0.64
VPS50-207ENST00000458530 FAM161AQ3B820 660 aa11.06□□□□□ -0.64
VPS50-207ENST00000458530 CCDC191Q8NCU4 936 aa11.06□□□□□ -0.64
VPS50-207ENST00000458530 CWC25Q9NXE8 425 aaPredicted RBP11.06□□□□□ -0.64
VPS50-207ENST00000458530 NRXN2Q9P2S2 1712 aa11.06□□□□□ -0.64
VPS50-207ENST00000458530 MAP3K15Q6ZN16 1313 aa11.06□□□□□ -0.64
VPS50-207ENST00000458530 AK9Q5TCS8 1911 aa11.05□□□□□ -0.64
VPS50-207ENST00000458530 SCN7AQ01118 1682 aa11.05□□□□□ -0.64
VPS50-207ENST00000458530 A0A087WZG4 1122 aa11.05□□□□□ -0.64
VPS50-207ENST00000458530 EIF5BO60841 1220 aaKnown RBP11.05□□□□□ -0.64
VPS50-207ENST00000458530 RAB11FIP3O75154 756 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms