RNA–Protein interactions for RNA: ENST00000456957.2

PKNOX1-204, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 3

Gene PKNOX1, Length 569 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-204ENST00000456957 RABL6Q3YEC7 729 aaPredicted RBP20.27■□□□□ 0.84
PKNOX1-204ENST00000456957 NLRP3Q96P20 1036 aa20.27■□□□□ 0.84
PKNOX1-204ENST00000456957 LMBR1LQ6UX01 489 aa20.26■□□□□ 0.83
PKNOX1-204ENST00000456957 TTLL11Q8NHH1 800 aa20.26■□□□□ 0.83
PKNOX1-204ENST00000456957 BRCA1P38398 1863 aaKnown RBP20.26■□□□□ 0.83
PKNOX1-204ENST00000456957 KLRG2A4D1S0 409 aaPredicted RBP20.25■□□□□ 0.83
PKNOX1-204ENST00000456957 CSF1RP07333 972 aa20.25■□□□□ 0.83
PKNOX1-204ENST00000456957 PDE6BP35913 854 aa20.25■□□□□ 0.83
PKNOX1-204ENST00000456957 AAMPQ13685 434 aa20.25■□□□□ 0.83
PKNOX1-204ENST00000456957 SF3B3Q15393 1217 aaKnown RBP20.25■□□□□ 0.83
PKNOX1-204ENST00000456957 CCDC85AQ96PX6 553 aaPredicted RBP20.25■□□□□ 0.83
PKNOX1-204ENST00000456957 FAM161AQ3B820 660 aa20.24■□□□□ 0.83
PKNOX1-204ENST00000456957 CRY2Q49AN0 593 aa20.24■□□□□ 0.83
PKNOX1-204ENST00000456957 CEP85Q6P2H3 762 aa20.24■□□□□ 0.83
PKNOX1-204ENST00000456957 RTL9Q8NET4 1388 aa20.23■□□□□ 0.83
PKNOX1-204ENST00000456957 YY1P25490 414 aa20.23■□□□□ 0.83
PKNOX1-204ENST00000456957 MTX1Q13505 466 aa20.23■□□□□ 0.83
PKNOX1-204ENST00000456957 CCDC152Q4G0S7 254 aa20.23■□□□□ 0.83
PKNOX1-204ENST00000456957 GREM2Q9H772 168 aa20.23■□□□□ 0.83
PKNOX1-204ENST00000456957 CHMP3Q9Y3E7 222 aa20.23■□□□□ 0.83
PKNOX1-204ENST00000456957 PCDHB15Q9Y5E8 787 aa20.23■□□□□ 0.83
PKNOX1-204ENST00000456957 A0A1B0GUL6 1792 aa20.21■□□□□ 0.83
PKNOX1-204ENST00000456957 PNMA6EA0A0J9YXQ4 647 aa20.21■□□□□ 0.83
PKNOX1-204ENST00000456957 ATP8B2P98198 1209 aa20.21■□□□□ 0.83
PKNOX1-204ENST00000456957 C2CD5Q86YS7 1000 aa20.21■□□□□ 0.83
PKNOX1-204ENST00000456957 SIRT2Q8IXJ6 389 aa20.21■□□□□ 0.83
PKNOX1-204ENST00000456957 RPAP2Q8IXW5 612 aaPredicted RBP20.21■□□□□ 0.83
PKNOX1-204ENST00000456957 KLHL34Q8N239 644 aa20.21■□□□□ 0.83
PKNOX1-204ENST00000456957 CD2APQ9Y5K6 639 aa20.21■□□□□ 0.83
PKNOX1-204ENST00000456957 SRGAP3O43295 1099 aa20.2■□□□□ 0.82
PKNOX1-204ENST00000456957 SRGNP10124 158 aa20.2■□□□□ 0.82
PKNOX1-204ENST00000456957 CHRNA5P30532 468 aa20.2■□□□□ 0.82
PKNOX1-204ENST00000456957 RPGRQ92834 1020 aaKnown RBP20.2■□□□□ 0.82
PKNOX1-204ENST00000456957 SEC31BQ9NQW1 1179 aa20.2■□□□□ 0.82
PKNOX1-204ENST00000456957 H0YIN7 160 aa20.19■□□□□ 0.82
PKNOX1-204ENST00000456957 ITGA6P23229 1130 aa20.19■□□□□ 0.82
PKNOX1-204ENST00000456957 HOXA10P31260 410 aaPredicted RBP20.19■□□□□ 0.82
PKNOX1-204ENST00000456957 RFX5P48382 616 aaPredicted RBP20.19■□□□□ 0.82
PKNOX1-204ENST00000456957 PDZRN3Q9UPQ7 1066 aa20.19■□□□□ 0.82
PKNOX1-204ENST00000456957 LRRC37AA6NMS7 1700 aa20.19■□□□□ 0.82
PKNOX1-204ENST00000456957 SLX4Q8IY92 1834 aa20.18■□□□□ 0.82
PKNOX1-204ENST00000456957 NPR1P16066 1061 aa20.18■□□□□ 0.82
PKNOX1-204ENST00000456957 IFIT5Q13325 482 aaKnown RBP20.18■□□□□ 0.82
PKNOX1-204ENST00000456957 POLA2Q14181 598 aa20.18■□□□□ 0.82
PKNOX1-204ENST00000456957 DDX46Q7L014 1031 aaKnown RBP20.18■□□□□ 0.82
PKNOX1-204ENST00000456957 SSH3Q8TE77 659 aa20.18■□□□□ 0.82
PKNOX1-204ENST00000456957 ANKRD18BA2A2Z9 1011 aa20.17■□□□□ 0.82
PKNOX1-204ENST00000456957 DPEP1P16444 411 aa20.17■□□□□ 0.82
PKNOX1-204ENST00000456957 TGFB2P61812 414 aa20.17■□□□□ 0.82
PKNOX1-204ENST00000456957 CCDC57Q2TAC2 916 aa20.17■□□□□ 0.82
PKNOX1-204ENST00000456957 MASTLQ96GX5 879 aa20.17■□□□□ 0.82
PKNOX1-204ENST00000456957 RBM17Q96I25 401 aaKnown RBP20.17■□□□□ 0.82
PKNOX1-204ENST00000456957 A0A0G2JLW4 131 aa20.16■□□□□ 0.82
PKNOX1-204ENST00000456957 STYK1Q6J9G0 422 aa20.16■□□□□ 0.82
PKNOX1-204ENST00000456957 KLHDC4Q8TBB5 520 aa20.16■□□□□ 0.82
PKNOX1-204ENST00000456957 CELF1Q92879 486 aaKnown RBP20.16■□□□□ 0.82
PKNOX1-204ENST00000456957 ZNF594Q96JF6 807 aaPredicted RBP20.16■□□□□ 0.82
PKNOX1-204ENST00000456957 FHDC1Q9C0D6 1143 aaPredicted RBP20.16■□□□□ 0.82
PKNOX1-204ENST00000456957 KCNA3P22001 575 aa20.15■□□□□ 0.82
PKNOX1-204ENST00000456957 ERICH6BQ5W0A0 696 aa20.15■□□□□ 0.82
PKNOX1-204ENST00000456957 NLGN2Q8NFZ4 835 aa20.15■□□□□ 0.82
PKNOX1-204ENST00000456957 ZNF622Q969S3 477 aaKnown RBP eCLIP20.15■□□□□ 0.82
PKNOX1-204ENST00000456957 CRAMP1Q96RY5 1269 aa20.15■□□□□ 0.82
PKNOX1-204ENST00000456957 HMMRO75330 724 aa20.14■□□□□ 0.81
PKNOX1-204ENST00000456957 PTPN12Q05209 780 aaKnown RBP20.14■□□□□ 0.81
PKNOX1-204ENST00000456957 GRAPQ13588 217 aa20.14■□□□□ 0.81
PKNOX1-204ENST00000456957 GRAPLQ8TC17 118 aaPredicted RBP20.14■□□□□ 0.81
PKNOX1-204ENST00000456957 CDC5LQ99459 802 aaKnown RBP20.14■□□□□ 0.81
PKNOX1-204ENST00000456957 PA2G4Q9UQ80 394 aaKnown RBP20.14■□□□□ 0.81
PKNOX1-204ENST00000456957 ARFGEF1Q9Y6D6 1849 aa20.13■□□□□ 0.81
PKNOX1-204ENST00000456957 TAF7LQ5H9L4 462 aa20.13■□□□□ 0.81
PKNOX1-204ENST00000456957 COPRSQ9NQ92 184 aa20.13■□□□□ 0.81
PKNOX1-204ENST00000456957 ALDH1B1P30837 517 aa20.12■□□□□ 0.81
PKNOX1-204ENST00000456957 RPS8P62241 208 aaKnown RBP20.12■□□□□ 0.81
PKNOX1-204ENST00000456957 HDAC1Q13547 482 aaPredicted RBP20.12■□□□□ 0.81
PKNOX1-204ENST00000456957 ANKRD18AQ8IVF6 992 aa20.12■□□□□ 0.81
PKNOX1-204ENST00000456957 LTBP1Q14766 1721 aa20.11■□□□□ 0.81
PKNOX1-204ENST00000456957 IGHMBP2P38935 993 aaKnown RBP20.11■□□□□ 0.81
PKNOX1-204ENST00000456957 CNKSR1Q969H4 720 aa20.11■□□□□ 0.81
PKNOX1-204ENST00000456957 PUS3Q9BZE2 481 aaKnown RBP20.11■□□□□ 0.81
PKNOX1-204ENST00000456957 SIL1Q9H173 461 aa20.11■□□□□ 0.81
PKNOX1-204ENST00000456957 PPEF1O14829 653 aaPredicted RBP20.1■□□□□ 0.81
PKNOX1-204ENST00000456957 IGHDP01880 384 aa20.1■□□□□ 0.81
PKNOX1-204ENST00000456957 PRPF40BQ6NWY9 871 aaKnown RBP20.1■□□□□ 0.81
PKNOX1-204ENST00000456957 SLC51AQ86UW1 340 aa20.1■□□□□ 0.81
PKNOX1-204ENST00000456957 SYT17Q9BSW7 474 aa20.1■□□□□ 0.81
PKNOX1-204ENST00000456957 SURF6O75683 361 aaKnown RBP20.09■□□□□ 0.81
PKNOX1-204ENST00000456957 BBOX1O75936 387 aa20.09■□□□□ 0.81
PKNOX1-204ENST00000456957 LRRC24Q50LG9 513 aa20.09■□□□□ 0.81
PKNOX1-204ENST00000456957 LDHAL6AQ6ZMR3 332 aa20.09■□□□□ 0.81
PKNOX1-204ENST00000456957 MPHOSPH8Q99549 860 aa20.09■□□□□ 0.81
PKNOX1-204ENST00000456957 RWDD1Q9H446 243 aaPredicted RBP20.09■□□□□ 0.81
PKNOX1-204ENST00000456957 BSDC1Q9NW68 430 aaPredicted RBP20.09■□□□□ 0.81
PKNOX1-204ENST00000456957 PIM2Q9P1W9 311 aa20.09■□□□□ 0.81
PKNOX1-204ENST00000456957 EXOC6BQ9Y2D4 811 aa20.09■□□□□ 0.81
PKNOX1-204ENST00000456957 NOP58Q9Y2X3 529 aaKnown RBP20.09■□□□□ 0.81
PKNOX1-204ENST00000456957 EYA2O00167 538 aa20.08■□□□□ 0.81
PKNOX1-204ENST00000456957 ATG9AQ7Z3C6 839 aa20.08■□□□□ 0.81
PKNOX1-204ENST00000456957 TTLL6Q8N841 843 aa20.08■□□□□ 0.81
PKNOX1-204ENST00000456957 DCTPP1Q9H773 170 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms