RNA–Protein interactions for RNA: ENST00000453453.1

SNX17-204, Transcript of sorting nexin 17, humanhuman

TSL 1 (best)

Gene SNX17, Length 1,638 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-204ENST00000453453 CARMIL3Q8ND23 1372 aa19.47■□□□□ 0.71
SNX17-204ENST00000453453 PDE8AO60658 829 aa19.47■□□□□ 0.71
SNX17-204ENST00000453453 SURF6O75683 361 aaKnown RBP19.47■□□□□ 0.71
SNX17-204ENST00000453453 GTF2E1P29083 439 aaPredicted RBP19.47■□□□□ 0.71
SNX17-204ENST00000453453 NUCB1Q02818 461 aa19.47■□□□□ 0.71
SNX17-204ENST00000453453 DEFB132Q7Z7B7 95 aa19.47■□□□□ 0.71
SNX17-204ENST00000453453 RAB11FIP3O75154 756 aa19.46■□□□□ 0.71
SNX17-204ENST00000453453 OS9Q13438 667 aaPredicted RBP19.46■□□□□ 0.71
SNX17-204ENST00000453453 SLC15A2Q16348 729 aa19.46■□□□□ 0.71
SNX17-204ENST00000453453 CHD1LQ86WJ1 897 aa19.46■□□□□ 0.71
SNX17-204ENST00000453453 NBPF5PQ86XG9 351 aaPredicted RBP19.46■□□□□ 0.71
SNX17-204ENST00000453453 EXOC6BQ9Y2D4 811 aa19.46■□□□□ 0.71
SNX17-204ENST00000453453 DDX60Q8IY21 1712 aaKnown RBP19.46■□□□□ 0.71
SNX17-204ENST00000453453 GYS1P13807 737 aa19.45■□□□□ 0.7
SNX17-204ENST00000453453 ANTXR1Q9H6X2 564 aa19.45■□□□□ 0.7
SNX17-204ENST00000453453 NPHP1O15259 732 aa19.44■□□□□ 0.7
SNX17-204ENST00000453453 CTSWP56202 376 aa19.44■□□□□ 0.7
SNX17-204ENST00000453453 TPTE2Q6XPS3 522 aa19.44■□□□□ 0.7
SNX17-204ENST00000453453 COL23A1Q86Y22 540 aaPredicted RBP19.44■□□□□ 0.7
SNX17-204ENST00000453453 ERC1Q8IUD2 1116 aa19.44■□□□□ 0.7
SNX17-204ENST00000453453 TBC1D32Q96NH3 1257 aa19.44■□□□□ 0.7
SNX17-204ENST00000453453 APBB1O00213 710 aa19.43■□□□□ 0.7
SNX17-204ENST00000453453 G3BP1Q13283 466 aaKnown RBP eCLIP19.43■□□□□ 0.7
SNX17-204ENST00000453453 SYNE4Q8N205 404 aa19.43■□□□□ 0.7
SNX17-204ENST00000453453 LRRCC1Q9C099 1032 aa19.43■□□□□ 0.7
SNX17-204ENST00000453453 PNPLA7Q6ZV29 1317 aa19.43■□□□□ 0.7
SNX17-204ENST00000453453 NFIXQ14938 502 aa19.43■□□□□ 0.7
SNX17-204ENST00000453453 CCDC57Q2TAC2 916 aa19.43■□□□□ 0.7
SNX17-204ENST00000453453 LNPKQ9C0E8 428 aa19.43■□□□□ 0.7
SNX17-204ENST00000453453 CSF1RP07333 972 aa19.42■□□□□ 0.7
SNX17-204ENST00000453453 NUTM1Q86Y26 1132 aa19.42■□□□□ 0.7
SNX17-204ENST00000453453 NLGN1Q8N2Q7 840 aa19.42■□□□□ 0.7
SNX17-204ENST00000453453 COPRSQ9NQ92 184 aa19.42■□□□□ 0.7
SNX17-204ENST00000453453 HCLS1P14317 486 aaPredicted RBP19.41■□□□□ 0.7
SNX17-204ENST00000453453 IFIT5Q13325 482 aaKnown RBP19.41■□□□□ 0.7
SNX17-204ENST00000453453 ERFEQ4G0M1 354 aa19.41■□□□□ 0.7
SNX17-204ENST00000453453 KIF1BPQ96EK5 621 aa19.41■□□□□ 0.7
SNX17-204ENST00000453453 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.41■□□□□ 0.7
SNX17-204ENST00000453453 CASZ1Q86V15 1759 aa19.4■□□□□ 0.7
SNX17-204ENST00000453453 CCDC152Q4G0S7 254 aa19.4■□□□□ 0.7
SNX17-204ENST00000453453 TAF7LQ5H9L4 462 aa19.4■□□□□ 0.7
SNX17-204ENST00000453453 TTLL11Q8NHH1 800 aa19.4■□□□□ 0.7
SNX17-204ENST00000453453 PA2G4Q9UQ80 394 aaKnown RBP19.4■□□□□ 0.7
SNX17-204ENST00000453453 RFX5P48382 616 aaPredicted RBP19.4■□□□□ 0.7
SNX17-204ENST00000453453 CNBD1Q8NA66 436 aa19.4■□□□□ 0.7
SNX17-204ENST00000453453 ISY1Q9ULR0 285 aaKnown RBP19.4■□□□□ 0.7
SNX17-204ENST00000453453 ANKRD18BA2A2Z9 1011 aa19.39■□□□□ 0.69
SNX17-204ENST00000453453 PTPN12Q05209 780 aaKnown RBP19.39■□□□□ 0.69
SNX17-204ENST00000453453 SLC10A5Q5PT55 438 aa19.39■□□□□ 0.69
SNX17-204ENST00000453453 RHPN1Q8TCX5 695 aa19.39■□□□□ 0.69
SNX17-204ENST00000453453 SIL1Q9H173 461 aa19.39■□□□□ 0.69
SNX17-204ENST00000453453 TM4SF1P30408 202 aa19.38■□□□□ 0.69
SNX17-204ENST00000453453 ST5P78524 1137 aa19.38■□□□□ 0.69
SNX17-204ENST00000453453 CCDC85AQ96PX6 553 aaPredicted RBP19.38■□□□□ 0.69
SNX17-204ENST00000453453 RTL9Q8NET4 1388 aa19.37■□□□□ 0.69
SNX17-204ENST00000453453 ITGA6P23229 1130 aa19.37■□□□□ 0.69
SNX17-204ENST00000453453 KLHDC4Q8TBB5 520 aa19.37■□□□□ 0.69
SNX17-204ENST00000453453 GREM2Q9H772 168 aa19.37■□□□□ 0.69
SNX17-204ENST00000453453 FBXO3Q9UK99 471 aa19.37■□□□□ 0.69
SNX17-204ENST00000453453 ABCC12Q96J65 1359 aa19.37■□□□□ 0.69
SNX17-204ENST00000453453 SMARCA5O60264 1052 aaPredicted RBP19.36■□□□□ 0.69
SNX17-204ENST00000453453 SERPINB2P05120 415 aa19.36■□□□□ 0.69
SNX17-204ENST00000453453 NLRP3Q96P20 1036 aa19.36■□□□□ 0.69
SNX17-204ENST00000453453 FSD2A1L4K1 749 aa19.36■□□□□ 0.69
SNX17-204ENST00000453453 UPF1Q92900 1129 aaKnown RBP eCLIP19.36■□□□□ 0.69
SNX17-204ENST00000453453 RIC1Q4ADV7 1423 aa19.35■□□□□ 0.69
SNX17-204ENST00000453453 CIAO1O76071 339 aa19.35■□□□□ 0.69
SNX17-204ENST00000453453 IL15P40933 162 aaPredicted RBP19.35■□□□□ 0.69
SNX17-204ENST00000453453 PARP3Q9Y6F1 533 aa19.35■□□□□ 0.69
SNX17-204ENST00000453453 EYA2O00167 538 aa19.34■□□□□ 0.69
SNX17-204ENST00000453453 POLRMTO00411 1230 aaKnown RBP19.34■□□□□ 0.69
SNX17-204ENST00000453453 SF3B3Q15393 1217 aaKnown RBP19.34■□□□□ 0.69
SNX17-204ENST00000453453 PRR5LQ6MZQ0 368 aa19.34■□□□□ 0.69
SNX17-204ENST00000453453 CLASRPQ8N2M8 674 aaKnown RBP19.34■□□□□ 0.69
SNX17-204ENST00000453453 SEC24BO95487 1268 aa19.33■□□□□ 0.69
SNX17-204ENST00000453453 DDR1Q08345 913 aa19.33■□□□□ 0.69
SNX17-204ENST00000453453 ZNF594Q96JF6 807 aaPredicted RBP19.33■□□□□ 0.69
SNX17-204ENST00000453453 CDC5LQ99459 802 aaKnown RBP19.33■□□□□ 0.69
SNX17-204ENST00000453453 IL1RAPL2Q9NP60 686 aa19.33■□□□□ 0.69
SNX17-204ENST00000453453 NRXN2Q9P2S2 1712 aa19.33■□□□□ 0.68
SNX17-204ENST00000453453 SPEF2Q9C093 1822 aa19.32■□□□□ 0.68
SNX17-204ENST00000453453 TNRC6CQ9HCJ0 1690 aaKnown RBP19.32■□□□□ 0.68
SNX17-204ENST00000453453 MMP10P09238 476 aa19.32■□□□□ 0.68
SNX17-204ENST00000453453 IGHMBP2P38935 993 aaKnown RBP19.32■□□□□ 0.68
SNX17-204ENST00000453453 LDHAL6AQ6ZMR3 332 aa19.32■□□□□ 0.68
SNX17-204ENST00000453453 TBC1D2Q9BYX2 928 aa19.32■□□□□ 0.68
SNX17-204ENST00000453453 CHMP5Q9NZZ3 219 aa19.32■□□□□ 0.68
SNX17-204ENST00000453453 LRP5O75197 1615 aa19.31■□□□□ 0.68
SNX17-204ENST00000453453 GOLGA6L3A6NEY3 463 aa19.31■□□□□ 0.68
SNX17-204ENST00000453453 SASH1O94885 1247 aa19.31■□□□□ 0.68
SNX17-204ENST00000453453 MSL1Q68DK7 614 aa19.31■□□□□ 0.68
SNX17-204ENST00000453453 SLC16A10Q8TF71 515 aa19.31■□□□□ 0.68
SNX17-204ENST00000453453 CNNM1Q9NRU3 951 aa19.31■□□□□ 0.68
SNX17-204ENST00000453453 IFIT2P09913 472 aaKnown RBP19.3■□□□□ 0.68
SNX17-204ENST00000453453 MCM4P33991 863 aa19.3■□□□□ 0.68
SNX17-204ENST00000453453 CCDC24Q8N4L8 307 aa19.3■□□□□ 0.68
SNX17-204ENST00000453453 MPHOSPH8Q99549 860 aa19.3■□□□□ 0.68
SNX17-204ENST00000453453 TFCP2Q12800 502 aa19.29■□□□□ 0.68
SNX17-204ENST00000453453 LRRC24Q50LG9 513 aa19.29■□□□□ 0.68
SNX17-204ENST00000453453 DDX46Q7L014 1031 aaKnown RBP19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms