RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 CDR2Q01850 454 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 PKD2Q13563 968 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 PSMD6Q15008 389 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 RAB11FIP4Q86YS3 637 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 AKR1B10O60218 316 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 NLRP5P59047 1200 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 CNNM3Q8NE01 707 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 CEP164Q9UPV0 1460 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 ZRANB2O95218 330 aaKnown RBP eCLIP10.13□□□□□ -0.79
NIPBL-202ENST00000448238 GGT6Q6P531 493 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 SPATS2LQ9NUQ6 558 aaKnown RBP10.13□□□□□ -0.79
NIPBL-202ENST00000448238 KRT3P12035 628 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 KRT13P13646 458 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 USP5P45974 858 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 NRBF2Q96F24 287 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 RMND1Q9NWS8 449 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 SCINQ9Y6U3 715 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 ATICP31939 592 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 RUNDC1Q96C34 613 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 KRT86O43790 486 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 FNBP4Q8N3X1 1017 aaPredicted RBP10.13□□□□□ -0.79
NIPBL-202ENST00000448238 BAG1Q99933 345 aaPredicted RBP10.13□□□□□ -0.79
NIPBL-202ENST00000448238 CTTNBP2NLQ9P2B4 639 aa10.13□□□□□ -0.79
NIPBL-202ENST00000448238 RBM5P52756 815 aaKnown RBP eCLIP10.12□□□□□ -0.79
NIPBL-202ENST00000448238 CCDC125Q86Z20 511 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 ZSCAN29Q8IWY8 852 aaPredicted RBP10.12□□□□□ -0.79
NIPBL-202ENST00000448238 ZFP91Q96JP5 570 aaPredicted RBP10.12□□□□□ -0.79
NIPBL-202ENST00000448238 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.12□□□□□ -0.79
NIPBL-202ENST00000448238 MYO1BO43795 1136 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 RLBP1P12271 317 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 DDX19AQ9NUU7 478 aaKnown RBP10.12□□□□□ -0.79
NIPBL-202ENST00000448238 MCM4P33991 863 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 NBPF8Q3BBV2 869 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 KCNK9Q9NPC2 374 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 ANGPTL3Q9Y5C1 460 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 TXNDC9O14530 226 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 KRT83P78385 493 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 MPHOSPH8Q99549 860 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 MAK16Q9BXY0 300 aaKnown RBP10.12□□□□□ -0.79
NIPBL-202ENST00000448238 TRIM4Q9C037 500 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 INPP5BP32019 993 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 STK3Q13188 491 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 HDXQ7Z353 690 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 TSGA10Q9BZW7 698 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 CCDC68Q9H2F9 335 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 ARHGEF9O43307 516 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 RPGRIP1LQ68CZ1 1315 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 I3L4J1 428 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 ESRRGP62508 458 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 CNGA4Q8IV77 575 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 TTC16Q8NEE8 873 aa10.12□□□□□ -0.79
NIPBL-202ENST00000448238 MYCBPQ99417 103 aaPredicted RBP10.11□□□□□ -0.79
NIPBL-202ENST00000448238 PDRG1Q9NUG6 133 aa10.11□□□□□ -0.79
NIPBL-202ENST00000448238 NCBP1Q09161 790 aaKnown RBP10.11□□□□□ -0.79
NIPBL-202ENST00000448238 LRRC23Q53EV4 343 aaPredicted RBP10.11□□□□□ -0.79
NIPBL-202ENST00000448238 CCDC26Q8TAB7 109 aa10.11□□□□□ -0.79
NIPBL-202ENST00000448238 ATP6V0A1Q93050 837 aa10.11□□□□□ -0.79
NIPBL-202ENST00000448238 SH2B1Q9NRF2 756 aaPredicted RBP10.11□□□□□ -0.79
NIPBL-202ENST00000448238 GOLGA8AA7E2F4 631 aa10.11□□□□□ -0.79
NIPBL-202ENST00000448238 GOLGA8BA8MQT2 603 aa10.11□□□□□ -0.79
NIPBL-202ENST00000448238 VPS41P49754 854 aa10.11□□□□□ -0.79
NIPBL-202ENST00000448238 LGSNQ5TDP6 509 aa10.11□□□□□ -0.79
NIPBL-202ENST00000448238 BANK1Q8NDB2 785 aa10.11□□□□□ -0.79
NIPBL-202ENST00000448238 TRMT1Q9NXH9 659 aaKnown RBP10.11□□□□□ -0.79
NIPBL-202ENST00000448238 MICAL1Q8TDZ2 1067 aa10.11□□□□□ -0.79
NIPBL-202ENST00000448238 PYGLP06737 847 aa10.11□□□□□ -0.79
NIPBL-202ENST00000448238 ARHGAP4P98171 946 aa10.11□□□□□ -0.79
NIPBL-202ENST00000448238 PLCB3Q01970 1234 aa10.11□□□□□ -0.79
NIPBL-202ENST00000448238 MPNDQ8N594 471 aa10.11□□□□□ -0.79
NIPBL-202ENST00000448238 KLHDC4Q8TBB5 520 aa10.11□□□□□ -0.79
NIPBL-202ENST00000448238 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.11□□□□□ -0.79
NIPBL-202ENST00000448238 CCDC7Q96M83 1385 aa10.11□□□□□ -0.79
NIPBL-202ENST00000448238 MIA2Q96PC5 1412 aa10.11□□□□□ -0.79
NIPBL-202ENST00000448238 NECTIN2Q92692 538 aa10.11□□□□□ -0.79
NIPBL-202ENST00000448238 KIF27Q86VH2 1401 aa10.1□□□□□ -0.79
NIPBL-202ENST00000448238 GOLGA8QA0A0J9YX86 632 aa10.1□□□□□ -0.79
NIPBL-202ENST00000448238 GOLGA8OA6NCC3 632 aa10.1□□□□□ -0.79
NIPBL-202ENST00000448238 GOLGA8NF8WBI6 632 aa10.1□□□□□ -0.79
NIPBL-202ENST00000448238 MUM1Q2TAK8 710 aa10.1□□□□□ -0.79
NIPBL-202ENST00000448238 DIABLOQ9NR28 239 aa10.1□□□□□ -0.79
NIPBL-202ENST00000448238 ORC6Q9Y5N6 252 aa10.1□□□□□ -0.79
NIPBL-202ENST00000448238 MX2P20592 715 aa10.1□□□□□ -0.79
NIPBL-202ENST00000448238 LONP1P36776 959 aaKnown RBP10.1□□□□□ -0.79
NIPBL-202ENST00000448238 LMNB2Q03252 620 aa10.1□□□□□ -0.79
NIPBL-202ENST00000448238 ITIH3Q06033 890 aa10.1□□□□□ -0.79
NIPBL-202ENST00000448238 ZSCAN16Q9H4T2 348 aaPredicted RBP10.1□□□□□ -0.79
NIPBL-202ENST00000448238 APOEP02649 317 aa10.1□□□□□ -0.79
NIPBL-202ENST00000448238 TNNC1P63316 161 aa10.1□□□□□ -0.79
NIPBL-202ENST00000448238 APLFQ8IW19 511 aaPredicted RBP10.1□□□□□ -0.79
NIPBL-202ENST00000448238 ZFYVE1Q9HBF4 777 aa10.1□□□□□ -0.79
NIPBL-202ENST00000448238 ACTN4O43707 911 aaKnown RBP10.1□□□□□ -0.79
NIPBL-202ENST00000448238 OPHN1O60890 802 aa10.1□□□□□ -0.79
NIPBL-202ENST00000448238 SPAG1Q07617 926 aa10.1□□□□□ -0.79
NIPBL-202ENST00000448238 NUTM1Q86Y26 1132 aa10.1□□□□□ -0.79
NIPBL-202ENST00000448238 STK10O94804 968 aaKnown RBP10.1□□□□□ -0.79
NIPBL-202ENST00000448238 TRAF1Q13077 416 aa10.1□□□□□ -0.79
NIPBL-202ENST00000448238 AFG3L2Q9Y4W6 797 aa10.1□□□□□ -0.79
NIPBL-202ENST00000448238 ATP6V1AP38606 617 aa10.09□□□□□ -0.79
NIPBL-202ENST00000448238 PPP1R7Q15435 360 aa10.09□□□□□ -0.79
NIPBL-202ENST00000448238 UVSSAQ2YD98 709 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms