RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 GBA2Q9HCG7 927 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-204ENST00000446625 YDJCA8MPS7 323 aa10.39□□□□□ -0.75
LIMCH1-204ENST00000446625 H7C1D1 291 aa10.39□□□□□ -0.75
LIMCH1-204ENST00000446625 ZNF157P51786 506 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-204ENST00000446625 KIAA2012Q0VF49 1180 aa10.39□□□□□ -0.75
LIMCH1-204ENST00000446625 TNIP1Q15025 636 aa10.39□□□□□ -0.75
LIMCH1-204ENST00000446625 DPP8Q6V1X1 898 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-204ENST00000446625 SAMD7Q7Z3H4 446 aa10.39□□□□□ -0.75
LIMCH1-204ENST00000446625 KRT26Q7Z3Y9 468 aa10.39□□□□□ -0.75
LIMCH1-204ENST00000446625 MICALL2Q8IY33 904 aa10.39□□□□□ -0.75
LIMCH1-204ENST00000446625 ZNF34Q8IZ26 560 aa10.39□□□□□ -0.75
LIMCH1-204ENST00000446625 RTF1Q92541 710 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-204ENST00000446625 CSRNP1Q96S65 589 aa10.39□□□□□ -0.75
LIMCH1-204ENST00000446625 ZBTB3Q9H5J0 574 aa10.39□□□□□ -0.75
LIMCH1-204ENST00000446625 MIS18AQ9NYP9 233 aa10.39□□□□□ -0.75
LIMCH1-204ENST00000446625 HPS5Q9UPZ3 1129 aa10.39□□□□□ -0.75
LIMCH1-204ENST00000446625 ABCC4O15439 1325 aa10.38□□□□□ -0.75
LIMCH1-204ENST00000446625 CNGB1Q14028 1251 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-204ENST00000446625 KIF6Q6ZMV9 814 aa10.38□□□□□ -0.75
LIMCH1-204ENST00000446625 MPNDQ8N594 471 aa10.38□□□□□ -0.75
LIMCH1-204ENST00000446625 C2orf69Q8N8R5 385 aa10.38□□□□□ -0.75
LIMCH1-204ENST00000446625 NLRP3Q96P20 1036 aa10.38□□□□□ -0.75
LIMCH1-204ENST00000446625 ZBTB12Q9Y330 459 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-204ENST00000446625 RRP7AQ9Y3A4 280 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-204ENST00000446625 ANKRD36CQ5JPF3 1778 aa10.38□□□□□ -0.75
LIMCH1-204ENST00000446625 ADM5C9JUS6 153 aa10.37□□□□□ -0.75
LIMCH1-204ENST00000446625 CEP290O15078 2479 aa10.37□□□□□ -0.75
LIMCH1-204ENST00000446625 EGFRP00533 1210 aa10.37□□□□□ -0.75
LIMCH1-204ENST00000446625 MYL6BP14649 208 aa10.37□□□□□ -0.75
LIMCH1-204ENST00000446625 TAF7Q15545 349 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-204ENST00000446625 TBC1D10BQ4KMP7 808 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-204ENST00000446625 SLC10A5Q5PT55 438 aa10.37□□□□□ -0.75
LIMCH1-204ENST00000446625 SP8Q8IXZ3 490 aa10.37□□□□□ -0.75
LIMCH1-204ENST00000446625 DLG5Q8TDM6 1919 aa10.37□□□□□ -0.75
LIMCH1-204ENST00000446625 KDM3BQ7LBC6 1761 aa10.37□□□□□ -0.75
LIMCH1-204ENST00000446625 BBOX1O75936 387 aa10.36□□□□□ -0.75
LIMCH1-204ENST00000446625 SLC10A3P09131 477 aa10.36□□□□□ -0.75
LIMCH1-204ENST00000446625 PPP1R42Q7Z4L9 355 aa10.36□□□□□ -0.75
LIMCH1-204ENST00000446625 DPF2Q92785 391 aa10.36□□□□□ -0.75
LIMCH1-204ENST00000446625 DUOX1Q9NRD9 1551 aa10.35□□□□□ -0.75
LIMCH1-204ENST00000446625 PSMD14O00487 310 aa10.35□□□□□ -0.75
LIMCH1-204ENST00000446625 RBM26Q5T8P6 1007 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-204ENST00000446625 GIGYF2Q6Y7W6 1299 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-204ENST00000446625 DCPSQ96C86 337 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-204ENST00000446625 UTP14AQ9BVJ6 771 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-204ENST00000446625 SCN9AQ15858 1988 aa10.35□□□□□ -0.75
LIMCH1-204ENST00000446625 HTATSF1O43719 755 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-204ENST00000446625 PKN2Q16513 984 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-204ENST00000446625 PARP10Q53GL7 1025 aa10.34□□□□□ -0.75
LIMCH1-204ENST00000446625 RASAL3Q86YV0 1011 aa10.34□□□□□ -0.75
LIMCH1-204ENST00000446625 GCC1Q96CN9 775 aa10.34□□□□□ -0.75
LIMCH1-204ENST00000446625 TRIOBPQ9H2D6 2365 aa10.34□□□□□ -0.75
LIMCH1-204ENST00000446625 ASTN2O75129 1339 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-204ENST00000446625 LRRC37AA6NMS7 1700 aa10.33□□□□□ -0.76
LIMCH1-204ENST00000446625 U2AF1L5P0DN76 240 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-204ENST00000446625 HCLS1P14317 486 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-204ENST00000446625 U2AF1Q01081 240 aaKnown RBP eCLIP10.33□□□□□ -0.76
LIMCH1-204ENST00000446625 HABP4Q5JVS0 413 aaKnown RBP10.33□□□□□ -0.76
LIMCH1-204ENST00000446625 REM2Q8IYK8 340 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-204ENST00000446625 ZNF296Q8WUU4 475 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-204ENST00000446625 CNKSR2Q8WXI2 1034 aa10.33□□□□□ -0.76
LIMCH1-204ENST00000446625 DBNDD1Q9H9R9 158 aa10.33□□□□□ -0.76
LIMCH1-204ENST00000446625 KCNQ5Q9NR82 932 aa10.33□□□□□ -0.76
LIMCH1-204ENST00000446625 HDAC9Q9UKV0 1011 aa10.33□□□□□ -0.76
LIMCH1-204ENST00000446625 MKI67P46013 3256 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-204ENST00000446625 RIMBP2O15034 1052 aa10.32□□□□□ -0.76
LIMCH1-204ENST00000446625 TBC1D8O95759 1140 aa10.32□□□□□ -0.76
LIMCH1-204ENST00000446625 EIF4A1P60842 406 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-204ENST00000446625 GRAPQ13588 217 aa10.32□□□□□ -0.76
LIMCH1-204ENST00000446625 DDX46Q7L014 1031 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-204ENST00000446625 SULF1Q8IWU6 871 aa10.32□□□□□ -0.76
LIMCH1-204ENST00000446625 GRAPLQ8TC17 118 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-204ENST00000446625 CDCA5Q96FF9 252 aa10.32□□□□□ -0.76
LIMCH1-204ENST00000446625 CFAP53Q96M91 514 aa10.32□□□□□ -0.76
LIMCH1-204ENST00000446625 THUMPD2Q9BTF0 503 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-204ENST00000446625 GGA3Q9NZ52 723 aa10.32□□□□□ -0.76
LIMCH1-204ENST00000446625 NUDCQ9Y266 331 aa10.32□□□□□ -0.76
LIMCH1-204ENST00000446625 RTL9Q8NET4 1388 aa10.31□□□□□ -0.76
LIMCH1-204ENST00000446625 DDX60Q8IY21 1712 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-204ENST00000446625 RPS12P25398 132 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-204ENST00000446625 WASHC4Q2M389 1173 aa10.31□□□□□ -0.76
LIMCH1-204ENST00000446625 KIF4BQ2VIQ3 1234 aa10.31□□□□□ -0.76
LIMCH1-204ENST00000446625 LRP10Q7Z4F1 713 aa10.31□□□□□ -0.76
LIMCH1-204ENST00000446625 PAPPA2Q9BXP8 1791 aa10.3□□□□□ -0.76
LIMCH1-204ENST00000446625 ECE2O60344 883 aa10.3□□□□□ -0.76
LIMCH1-204ENST00000446625 DOK7Q18PE1 504 aa10.3□□□□□ -0.76
LIMCH1-204ENST00000446625 FBXO46Q6PJ61 603 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-204ENST00000446625 NLRP10Q86W26 655 aa10.3□□□□□ -0.76
LIMCH1-204ENST00000446625 PNISRQ8TF01 805 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-204ENST00000446625 NSFL1CQ9UNZ2 370 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-204ENST00000446625 ERBB4Q15303 1308 aa10.3□□□□□ -0.76
LIMCH1-204ENST00000446625 CLSPNQ9HAW4 1339 aa10.3□□□□□ -0.76
LIMCH1-204ENST00000446625 C6orf229H3BNL8 230 aa10.29□□□□□ -0.76
LIMCH1-204ENST00000446625 GPR25O00155 361 aa10.29□□□□□ -0.76
LIMCH1-204ENST00000446625 ANXA1P04083 346 aa10.29□□□□□ -0.76
LIMCH1-204ENST00000446625 PDIA6Q15084 440 aa10.29□□□□□ -0.76
LIMCH1-204ENST00000446625 PROSER3Q2NL68 480 aa10.29□□□□□ -0.76
LIMCH1-204ENST00000446625 ANGEL2Q5VTE6 544 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-204ENST00000446625 MOB2Q70IA6 237 aa10.29□□□□□ -0.76
LIMCH1-204ENST00000446625 TMC4Q7Z404 712 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms