RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 NRDCO43847 1150 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 TCEA2Q15560 299 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 C21orf62-AS1Q17RA5 79 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 KRBA2Q6ZNG9 492 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 PGBD3Q8N328 593 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 GPR152Q8TDT2 470 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 CHAC2Q8WUX2 184 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 NOS2P35228 1153 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 ZAP70P43403 619 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 PPM1EQ8WY54 764 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 ZHX3Q9H4I2 956 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 PPP4R2Q9NY27 417 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 PRKAG3Q9UGI9 489 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 ZNF232Q9UNY5 417 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 ATP8A1Q9Y2Q0 1164 aa2.98□□□□□ -1.93
CCDC88A-208ENST00000444458 USP31Q70CQ4 1352 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 GDF10P55107 478 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 EXOSC10Q01780 885 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 RASA3Q14644 834 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 TNNI3KQ59H18 835 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 BPHLQ86WA6 291 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 SCYL1Q96KG9 808 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 SMAD5Q99717 465 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 SRRTQ9BXP5 876 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 DNAJC25Q9H1X3 360 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 GINM1Q9NU53 330 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 EVA1BQ9NVM1 165 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 FBXO9Q9UK97 447 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 ALG1L2C9J202 215 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 TNFRSF10BO14763 440 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 ITGBL1O95965 494 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 PDGFAP04085 211 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 GNALP38405 381 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 FAM98CQ17RN3 349 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 LARP1BQ659C4 914 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 LRP10Q7Z4F1 713 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 PDILTQ8N807 584 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 TCERG1O14776 1098 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 ALDH1L1O75891 902 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 ASMTLO95671 621 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 MYCLP1P12525 358 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 PDE6BP35913 854 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 NFKB2Q00653 900 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 MAP3K11Q16584 847 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 BRDTQ58F21 947 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 NME8Q8N427 588 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 RASGRP4Q8TDF6 673 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 TRIM52Q96A61 297 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 MAF1Q9H063 256 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 KANSL2Q9H9L4 492 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 FAM13BQ9NYF5 915 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 PFDN2Q9UHV9 154 aa2.97□□□□□ -1.93
CCDC88A-208ENST00000444458 A0A1W2PRU2 124 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 ZBTB39O15060 712 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 SMAD7O15105 426 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 PDPK1O15530 556 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 ACTN4O43707 911 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 CD53P19397 219 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 LMNB1P20700 586 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 SOX5P35711 763 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 PSMA6P60900 246 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 CCDC85BQ15834 202 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 GJD3Q8N144 294 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 LILRB2Q8N423 598 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 NUDT16Q96DE0 195 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 OCSTAMPQ9BR26 566 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 ANP32CO43423 234 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 TSPAN6O43657 245 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 RPLP1P05386 114 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 NEFMP07197 916 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 IFIT2P09913 472 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 EIF4A3P38919 411 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 EPHB1P54762 984 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 APOBRQ0VD83 1088 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 TTF1Q15361 905 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 PPP2R5EQ16537 467 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 LINC01559Q495D7 138 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 PI16Q6UXB8 463 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 CCDC81Q6ZN84 652 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 SLC9A9Q8IVB4 645 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 RELTQ969Z4 430 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 IL17RAQ96F46 866 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 FERD3LQ96RJ6 166 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 NBPF7P0C2Y1 421 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 CPEP16870 476 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 PPM1FP49593 454 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 DGKZQ13574 1117 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 ERFEQ4G0M1 354 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 BRICD5Q6PL45 260 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 KIAA0907Q7Z7F0 614 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 JAMLQ86YT9 394 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 PPCSQ9HAB8 311 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 ACTR10Q9NZ32 417 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 SWAP70Q9UH65 585 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 LEMD3Q9Y2U8 911 aa2.96□□□□□ -1.94
CCDC88A-208ENST00000444458 A6NHS1 94 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 KLF4O43474 513 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 DDAH1O94760 285 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 MCM4P33991 863 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 ST13P50502 369 aaKnown RBP2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms