RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 CPLX1O14810 134 aa10.59□□□□□ -0.71
COPB1-202ENST00000439561 CTIFO43310 598 aaKnown RBP10.59□□□□□ -0.71
COPB1-202ENST00000439561 LMOD1P29536 600 aaPredicted RBP10.59□□□□□ -0.71
COPB1-202ENST00000439561 KMT5BQ4FZB7 885 aa10.59□□□□□ -0.71
COPB1-202ENST00000439561 DDX46Q7L014 1031 aaKnown RBP10.59□□□□□ -0.71
COPB1-202ENST00000439561 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.59□□□□□ -0.71
COPB1-202ENST00000439561 IFNKQ9P0W0 207 aa10.59□□□□□ -0.71
COPB1-202ENST00000439561 ARHGEF28Q8N1W1 1705 aaKnown RBP10.58□□□□□ -0.72
COPB1-202ENST00000439561 A0A1B0GVL5 298 aa10.58□□□□□ -0.72
COPB1-202ENST00000439561 NEMFO60524 1076 aa10.58□□□□□ -0.72
COPB1-202ENST00000439561 SYNE3Q6ZMZ3 975 aa10.58□□□□□ -0.72
COPB1-202ENST00000439561 TDRD7Q8NHU6 1098 aaKnown RBP10.58□□□□□ -0.72
COPB1-202ENST00000439561 ERO1AQ96HE7 468 aa10.58□□□□□ -0.72
COPB1-202ENST00000439561 PGBD1Q96JS3 809 aa10.58□□□□□ -0.72
COPB1-202ENST00000439561 LGR6Q9HBX8 967 aa10.58□□□□□ -0.72
COPB1-202ENST00000439561 NCOA5Q9HCD5 579 aaKnown RBP10.58□□□□□ -0.72
COPB1-202ENST00000439561 TLR7Q9NYK1 1049 aaKnown RBP10.58□□□□□ -0.72
COPB1-202ENST00000439561 TAF6LQ9Y6J9 622 aa10.58□□□□□ -0.72
COPB1-202ENST00000439561 NEXMIFQ5QGS0 1516 aa10.58□□□□□ -0.72
COPB1-202ENST00000439561 ATP7BP35670 1465 aa10.58□□□□□ -0.72
COPB1-202ENST00000439561 METP08581 1390 aa10.58□□□□□ -0.72
COPB1-202ENST00000439561 DDX58O95786 925 aaKnown RBP10.58□□□□□ -0.72
COPB1-202ENST00000439561 COL9A3Q14050 684 aaPredicted RBP10.58□□□□□ -0.72
COPB1-202ENST00000439561 BMS1Q14692 1282 aaKnown RBP10.58□□□□□ -0.72
COPB1-202ENST00000439561 CFAP100Q494V2 611 aa10.58□□□□□ -0.72
COPB1-202ENST00000439561 CREBRFQ8IUR6 639 aa10.58□□□□□ -0.72
COPB1-202ENST00000439561 CHMP4AQ9BY43 222 aa10.58□□□□□ -0.72
COPB1-202ENST00000439561 PPLO60437 1756 aa10.58□□□□□ -0.72
COPB1-202ENST00000439561 KNDC1Q76NI1 1749 aa10.57□□□□□ -0.72
COPB1-202ENST00000439561 APOBRQ0VD83 1088 aa10.57□□□□□ -0.72
COPB1-202ENST00000439561 TM6SF1Q9BZW5 370 aa10.57□□□□□ -0.72
COPB1-202ENST00000439561 ZSWIM4Q9H7M6 989 aa10.57□□□□□ -0.72
COPB1-202ENST00000439561 KRT32Q14532 448 aa10.57□□□□□ -0.72
COPB1-202ENST00000439561 PTPN21Q16825 1174 aa10.57□□□□□ -0.72
COPB1-202ENST00000439561 SKIDA1Q1XH10 827 aa10.57□□□□□ -0.72
COPB1-202ENST00000439561 OTUD7BQ6GQQ9 843 aa10.57□□□□□ -0.72
COPB1-202ENST00000439561 EAF2Q96CJ1 260 aaPredicted RBP10.57□□□□□ -0.72
COPB1-202ENST00000439561 CALCOCO1Q9P1Z2 691 aa10.57□□□□□ -0.72
COPB1-202ENST00000439561 ZNF330Q9Y3S2 320 aaPredicted RBP10.57□□□□□ -0.72
COPB1-202ENST00000439561 MAP2P11137 1827 aaKnown RBP10.57□□□□□ -0.72
COPB1-202ENST00000439561 NECTIN1Q15223 517 aa10.57□□□□□ -0.72
COPB1-202ENST00000439561 TTLL5Q6EMB2 1281 aa10.57□□□□□ -0.72
COPB1-202ENST00000439561 CYB5RLQ6IPT4 315 aa10.57□□□□□ -0.72
COPB1-202ENST00000439561 ZNF589Q86UQ0 364 aaPredicted RBP10.57□□□□□ -0.72
COPB1-202ENST00000439561 YEATS2Q9ULM3 1422 aa10.57□□□□□ -0.72
COPB1-202ENST00000439561 CTAGE5O15320 804 aa10.56□□□□□ -0.72
COPB1-202ENST00000439561 PIP4K2AP48426 406 aaPredicted RBP10.56□□□□□ -0.72
COPB1-202ENST00000439561 FAM69CQ0P6D2 419 aa10.56□□□□□ -0.72
COPB1-202ENST00000439561 PLA2G4DQ86XP0 818 aa10.56□□□□□ -0.72
COPB1-202ENST00000439561 CCDC34Q96HJ3 373 aa10.56□□□□□ -0.72
COPB1-202ENST00000439561 SEC62Q99442 399 aaKnown RBP10.56□□□□□ -0.72
COPB1-202ENST00000439561 EPB41L2O43491 1005 aaKnown RBP10.56□□□□□ -0.72
COPB1-202ENST00000439561 PDIA4P13667 645 aaKnown RBP10.56□□□□□ -0.72
COPB1-202ENST00000439561 ST3GAL1Q11201 340 aa10.56□□□□□ -0.72
COPB1-202ENST00000439561 TERF2Q15554 542 aa10.56□□□□□ -0.72
COPB1-202ENST00000439561 RBM33Q96EV2 1170 aaKnown RBP10.56□□□□□ -0.72
COPB1-202ENST00000439561 ZSCAN16Q9H4T2 348 aaPredicted RBP10.56□□□□□ -0.72
COPB1-202ENST00000439561 BICC1Q9H694 974 aaKnown RBP10.56□□□□□ -0.72
COPB1-202ENST00000439561 DBF4Q9UBU7 674 aaPredicted RBP10.56□□□□□ -0.72
COPB1-202ENST00000439561 FLT4P35916 1363 aa10.56□□□□□ -0.72
COPB1-202ENST00000439561 CRB1P82279 1406 aa10.56□□□□□ -0.72
COPB1-202ENST00000439561 LMTK2Q8IWU2 1503 aa10.56□□□□□ -0.72
COPB1-202ENST00000439561 PTPDC1A2A3K4 754 aa10.56□□□□□ -0.72
COPB1-202ENST00000439561 GSDMDP57764 484 aa10.56□□□□□ -0.72
COPB1-202ENST00000439561 BEND3Q5T5X7 828 aa10.56□□□□□ -0.72
COPB1-202ENST00000439561 KIDINS220Q9ULH0 1771 aa10.55□□□□□ -0.72
COPB1-202ENST00000439561 CPS1P31327 1500 aa10.55□□□□□ -0.72
COPB1-202ENST00000439561 CAVIN2O95810 425 aa10.55□□□□□ -0.72
COPB1-202ENST00000439561 GPS2Q13227 327 aa10.55□□□□□ -0.72
COPB1-202ENST00000439561 MAP4K1Q92918 833 aa10.55□□□□□ -0.72
COPB1-202ENST00000439561 USP28Q96RU2 1077 aa10.55□□□□□ -0.72
COPB1-202ENST00000439561 ELP1O95163 1332 aa10.55□□□□□ -0.72
COPB1-202ENST00000439561 MAP3K5Q99683 1374 aa10.55□□□□□ -0.72
COPB1-202ENST00000439561 KIF2AO00139 706 aaPredicted RBP10.55□□□□□ -0.72
COPB1-202ENST00000439561 SLC3A2P08195 630 aaKnown RBP10.55□□□□□ -0.72
COPB1-202ENST00000439561 POLA2Q14181 598 aa10.55□□□□□ -0.72
COPB1-202ENST00000439561 WASHC4Q2M389 1173 aa10.55□□□□□ -0.72
COPB1-202ENST00000439561 ARAP3Q8WWN8 1544 aa10.55□□□□□ -0.72
COPB1-202ENST00000439561 NEURL4Q96JN8 1562 aa10.54□□□□□ -0.72
COPB1-202ENST00000439561 HAND2P61296 217 aa10.54□□□□□ -0.72
COPB1-202ENST00000439561 XPO4Q9C0E2 1151 aaKnown RBP10.54□□□□□ -0.72
COPB1-202ENST00000439561 CHGBP05060 677 aa10.54□□□□□ -0.72
COPB1-202ENST00000439561 ATP2B1P20020 1258 aa10.54□□□□□ -0.72
COPB1-202ENST00000439561 NEK11Q8NG66 645 aa10.54□□□□□ -0.72
COPB1-202ENST00000439561 SUCLG2Q96I99 432 aa10.54□□□□□ -0.72
COPB1-202ENST00000439561 EID1Q9Y6B2 187 aa10.54□□□□□ -0.72
COPB1-202ENST00000439561 GRM8O00222 908 aa10.54□□□□□ -0.72
COPB1-202ENST00000439561 TOB2Q14106 344 aaPredicted RBP10.54□□□□□ -0.72
COPB1-202ENST00000439561 MRPS27Q92552 414 aaKnown RBP10.54□□□□□ -0.72
COPB1-202ENST00000439561 MYD88Q99836 296 aa10.54□□□□□ -0.72
COPB1-202ENST00000439561 HMG20BQ9P0W2 317 aa10.54□□□□□ -0.72
COPB1-202ENST00000439561 GOLIM4O00461 696 aa10.53□□□□□ -0.72
COPB1-202ENST00000439561 MARCKSP29966 332 aaPredicted RBP10.53□□□□□ -0.72
COPB1-202ENST00000439561 GOLGA8FQ08AF8 430 aa10.53□□□□□ -0.72
COPB1-202ENST00000439561 GOLGA8DPQ0D2H9 430 aa10.53□□□□□ -0.72
COPB1-202ENST00000439561 PROSER3Q2NL68 480 aa10.53□□□□□ -0.72
COPB1-202ENST00000439561 LRRC59Q96AG4 307 aaKnown RBP10.53□□□□□ -0.72
COPB1-202ENST00000439561 IFT172Q9UG01 1749 aa10.53□□□□□ -0.72
COPB1-202ENST00000439561 SLFN14P0C7P3 912 aa10.53□□□□□ -0.72
COPB1-202ENST00000439561 FAM160A1Q05DH4 1040 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms