RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 SLAIN2Q9P270 581 aa6.48□□□□□ -1.37
VPS41-207ENST00000439468 SPDYE3A6NKU9 549 aa6.47□□□□□ -1.37
VPS41-207ENST00000439468 OPLAHO14841 1288 aa6.47□□□□□ -1.37
VPS41-207ENST00000439468 CPB1P15086 417 aa6.47□□□□□ -1.37
VPS41-207ENST00000439468 ARID4AP29374 1257 aaPredicted RBP6.47□□□□□ -1.37
VPS41-207ENST00000439468 MLLT1Q03111 559 aaPredicted RBP6.47□□□□□ -1.37
VPS41-207ENST00000439468 ALYREFQ86V81 257 aaKnown RBP6.47□□□□□ -1.37
VPS41-207ENST00000439468 AEBP1Q8IUX7 1158 aa6.47□□□□□ -1.37
VPS41-207ENST00000439468 TRIM11Q96F44 468 aa6.47□□□□□ -1.37
VPS41-207ENST00000439468 MDFIQ99750 246 aa6.47□□□□□ -1.37
VPS41-207ENST00000439468 SEPT3Q9UH03 358 aa6.47□□□□□ -1.37
VPS41-207ENST00000439468 STARD13Q9Y3M8 1113 aa6.47□□□□□ -1.37
VPS41-207ENST00000439468 TMEM88BA6NKF7 163 aa6.46□□□□□ -1.38
VPS41-207ENST00000439468 LILRB5O75023 590 aa6.46□□□□□ -1.38
VPS41-207ENST00000439468 PRRT3Q5FWE3 981 aa6.46□□□□□ -1.38
VPS41-207ENST00000439468 PSAPL1Q6NUJ1 521 aa6.46□□□□□ -1.38
VPS41-207ENST00000439468 DHX32Q7L7V1 743 aaKnown RBP6.46□□□□□ -1.38
VPS41-207ENST00000439468 FAM35AQ86V20 835 aa6.46□□□□□ -1.38
VPS41-207ENST00000439468 MICALL1Q8N3F8 863 aa6.46□□□□□ -1.38
VPS41-207ENST00000439468 ABTB2Q8N961 1025 aa6.46□□□□□ -1.38
VPS41-207ENST00000439468 PIK3R5Q8WYR1 880 aa6.46□□□□□ -1.38
VPS41-207ENST00000439468 FAM13BQ9NYF5 915 aa6.46□□□□□ -1.38
VPS41-207ENST00000439468 ZFATQ9P243 1243 aa6.46□□□□□ -1.38
VPS41-207ENST00000439468 KRBA1A5PL33 1030 aa6.45□□□□□ -1.38
VPS41-207ENST00000439468 TNFRSF10BO14763 440 aa6.45□□□□□ -1.38
VPS41-207ENST00000439468 MSTNO14793 375 aa6.45□□□□□ -1.38
VPS41-207ENST00000439468 IGHA1P01876 353 aa6.45□□□□□ -1.38
VPS41-207ENST00000439468 ZAP70P43403 619 aa6.45□□□□□ -1.38
VPS41-207ENST00000439468 PCSK7Q16549 785 aa6.45□□□□□ -1.38
VPS41-207ENST00000439468 STIM2Q9P246 746 aa6.45□□□□□ -1.38
VPS41-207ENST00000439468 UBAP1LF5GYI3 381 aa6.44□□□□□ -1.38
VPS41-207ENST00000439468 FAM229AH3BQW9 127 aa6.44□□□□□ -1.38
VPS41-207ENST00000439468 RGS9O75916 674 aaPredicted RBP6.44□□□□□ -1.38
VPS41-207ENST00000439468 MAP3K6O95382 1288 aa6.44□□□□□ -1.38
VPS41-207ENST00000439468 PSAPP07602 524 aa6.44□□□□□ -1.38
VPS41-207ENST00000439468 EIF2AK2P19525 551 aaKnown RBP6.44□□□□□ -1.38
VPS41-207ENST00000439468 SCNN1AP37088 669 aa6.44□□□□□ -1.38
VPS41-207ENST00000439468 FAM26DQ5JW98 314 aa6.44□□□□□ -1.38
VPS41-207ENST00000439468 TRAPPC3LQ5T215 181 aa6.44□□□□□ -1.38
VPS41-207ENST00000439468 ELMSAN1Q6PJG2 1045 aa6.44□□□□□ -1.38
VPS41-207ENST00000439468 HFE2Q6ZVN8 426 aa6.44□□□□□ -1.38
VPS41-207ENST00000439468 GPR152Q8TDT2 470 aa6.44□□□□□ -1.38
VPS41-207ENST00000439468 NAGPAQ9UK23 515 aa6.44□□□□□ -1.38
VPS41-207ENST00000439468 SPATA31C1P0DKV0 1188 aa6.43□□□□□ -1.38
VPS41-207ENST00000439468 TRIM28Q13263 835 aaKnown RBP6.43□□□□□ -1.38
VPS41-207ENST00000439468 NSUN5Q96P11 429 aaKnown RBP6.43□□□□□ -1.38
VPS41-207ENST00000439468 SPOCK3Q9BQ16 436 aa6.43□□□□□ -1.38
VPS41-207ENST00000439468 C11orf16Q9NQ32 467 aa6.43□□□□□ -1.38
VPS41-207ENST00000439468 KCNMB2Q9Y691 235 aa6.43□□□□□ -1.38
VPS41-207ENST00000439468 EGFRP00533 1210 aa6.42□□□□□ -1.38
VPS41-207ENST00000439468 GPLD1P80108 840 aa6.42□□□□□ -1.38
VPS41-207ENST00000439468 TRIP4Q15650 581 aaPredicted RBP6.42□□□□□ -1.38
VPS41-207ENST00000439468 C20orf204Q6ZNR8 217 aa6.42□□□□□ -1.38
VPS41-207ENST00000439468 HELQQ8TDG4 1101 aa6.42□□□□□ -1.38
VPS41-207ENST00000439468 PRDM6Q9NQX0 595 aa6.42□□□□□ -1.38
VPS41-207ENST00000439468 TLR7Q9NYK1 1049 aaKnown RBP6.42□□□□□ -1.38
VPS41-207ENST00000439468 PODXL2Q9NZ53 605 aa6.42□□□□□ -1.38
VPS41-207ENST00000439468 MTMR7Q9Y216 660 aa6.42□□□□□ -1.38
VPS41-207ENST00000439468 FNDC3AQ9Y2H6 1198 aaKnown RBP6.42□□□□□ -1.38
VPS41-207ENST00000439468 ZBTB39O15060 712 aa6.41□□□□□ -1.38
VPS41-207ENST00000439468 MMP20O60882 483 aa6.41□□□□□ -1.38
VPS41-207ENST00000439468 APBA3O96018 575 aa6.41□□□□□ -1.38
VPS41-207ENST00000439468 NID1P14543 1247 aa6.41□□□□□ -1.38
VPS41-207ENST00000439468 PLAURQ03405 335 aa6.41□□□□□ -1.38
VPS41-207ENST00000439468 AAMPQ13685 434 aa6.41□□□□□ -1.38
VPS41-207ENST00000439468 PERM1Q5SV97 790 aa6.41□□□□□ -1.38
VPS41-207ENST00000439468 NLRP13Q86W25 1043 aa6.41□□□□□ -1.38
VPS41-207ENST00000439468 ATCAYQ86WG3 371 aa6.41□□□□□ -1.38
VPS41-207ENST00000439468 TTC16Q8NEE8 873 aa6.41□□□□□ -1.38
VPS41-207ENST00000439468 TRPM4Q8TD43 1214 aa6.41□□□□□ -1.38
VPS41-207ENST00000439468 GTF3C2Q8WUA4 911 aaPredicted RBP6.41□□□□□ -1.38
VPS41-207ENST00000439468 SMG9Q9H0W8 520 aaKnown RBP6.41□□□□□ -1.38
VPS41-207ENST00000439468 RBSNQ9H1K0 784 aa6.41□□□□□ -1.38
VPS41-207ENST00000439468 C1QTNF9BB2RNN3 333 aa6.4□□□□□ -1.38
VPS41-207ENST00000439468 ZBTB42B2RXF5 422 aa6.4□□□□□ -1.38
VPS41-207ENST00000439468 ABL1P00519 1130 aa6.4□□□□□ -1.38
VPS41-207ENST00000439468 GHRHP01286 108 aa6.4□□□□□ -1.38
VPS41-207ENST00000439468 ITGB2P05107 769 aa6.4□□□□□ -1.38
VPS41-207ENST00000439468 SSFA2P28290 1259 aa6.4□□□□□ -1.38
VPS41-207ENST00000439468 CHRNA4P43681 627 aa6.4□□□□□ -1.38
VPS41-207ENST00000439468 AFF1P51825 1210 aaKnown RBP6.4□□□□□ -1.38
VPS41-207ENST00000439468 NRLP54845 237 aa6.4□□□□□ -1.38
VPS41-207ENST00000439468 RAC1P63000 192 aa6.4□□□□□ -1.38
VPS41-207ENST00000439468 TTC39BQ5VTQ0 682 aaPredicted RBP6.4□□□□□ -1.38
VPS41-207ENST00000439468 USTQ9Y2C2 406 aa6.4□□□□□ -1.38
VPS41-207ENST00000439468 J3QW42 95 aa6.39□□□□□ -1.39
VPS41-207ENST00000439468 PCSK2P16519 638 aa6.39□□□□□ -1.39
VPS41-207ENST00000439468 MPSTP25325 297 aa6.39□□□□□ -1.39
VPS41-207ENST00000439468 DNM1Q05193 864 aaKnown RBP6.39□□□□□ -1.39
VPS41-207ENST00000439468 MTMR3Q13615 1198 aa6.39□□□□□ -1.39
VPS41-207ENST00000439468 COL9A3Q14050 684 aaPredicted RBP6.39□□□□□ -1.39
VPS41-207ENST00000439468 NOM1Q5C9Z4 860 aaKnown RBP6.39□□□□□ -1.39
VPS41-207ENST00000439468 CD163Q86VB7 1156 aa6.39□□□□□ -1.39
VPS41-207ENST00000439468 DMRTC2Q8IXT2 367 aaPredicted RBP6.39□□□□□ -1.39
VPS41-207ENST00000439468 EDEM1Q92611 657 aa6.39□□□□□ -1.39
VPS41-207ENST00000439468 NUDT16Q96DE0 195 aaKnown RBP6.39□□□□□ -1.39
VPS41-207ENST00000439468 LPIN3Q9BQK8 851 aa6.39□□□□□ -1.39
VPS41-207ENST00000439468 LOC102724428A0A0B4J2F2 783 aa6.38□□□□□ -1.39
VPS41-207ENST00000439468 PROCP04070 461 aa6.38□□□□□ -1.39
VPS41-207ENST00000439468 SIK1P57059 783 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms