RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 NEK9Q8TD19 979 aa7.54□□□□□ -1.2
MCF2-205ENST00000437564 N4BP2L2Q92802 583 aaPredicted RBP7.54□□□□□ -1.2
MCF2-205ENST00000437564 SAAL1Q96ER3 474 aa7.54□□□□□ -1.2
MCF2-205ENST00000437564 PHF12Q96QT6 1004 aa7.54□□□□□ -1.2
MCF2-205ENST00000437564 MAK16Q9BXY0 300 aaKnown RBP7.54□□□□□ -1.2
MCF2-205ENST00000437564 BATF3Q9NR55 127 aa7.54□□□□□ -1.2
MCF2-205ENST00000437564 RGL1Q9NZL6 768 aa7.54□□□□□ -1.2
MCF2-205ENST00000437564 CNTLNQ9NXG0 1405 aa7.54□□□□□ -1.2
MCF2-205ENST00000437564 ERICH3Q5RHP9 1530 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 ATMINO43313 823 aaPredicted RBP7.53□□□□□ -1.2
MCF2-205ENST00000437564 CCDC159P0C7I6 412 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 SLC8A3P57103 927 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 RRP12Q5JTH9 1297 aaKnown RBP7.53□□□□□ -1.2
MCF2-205ENST00000437564 RCSD1Q6JBY9 416 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 TTC30AQ86WT1 665 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 FNBP4Q8N3X1 1017 aaPredicted RBP7.53□□□□□ -1.2
MCF2-205ENST00000437564 TTC30BQ8N4P2 665 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 MIGA1Q8NAN2 632 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 JAKMIP2Q96AA8 810 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 RSRC1Q96IZ7 334 aaKnown RBP7.53□□□□□ -1.2
MCF2-205ENST00000437564 SCLT1Q96NL6 688 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 PRKRIP1Q9H875 184 aaPredicted RBP7.53□□□□□ -1.2
MCF2-205ENST00000437564 GPCPD1Q9NPB8 672 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 EXOC1Q9NV70 894 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 QPCTLQ9NXS2 382 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 RABL2AQ9UBK7 228 aaPredicted RBP7.53□□□□□ -1.2
MCF2-205ENST00000437564 ITGB1BP2Q9UKP3 347 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 WDR37Q9Y2I8 494 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 ERC2O15083 957 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 GPR37O15354 613 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 TRIM37O94972 964 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 MSL3P1P0C860 447 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 CYP11B2P19099 503 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 ABL2P42684 1182 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 ZBED6P86452 979 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 G3BP1Q13283 466 aaKnown RBP eCLIP7.53□□□□□ -1.2
MCF2-205ENST00000437564 LAMB3Q13751 1172 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 COL19A1Q14993 1142 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 SLC4A8Q2Y0W8 1093 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 ZSCAN23Q3MJ62 389 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 LRSAM1Q6UWE0 723 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 LRRC31Q6UY01 552 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 MFN1Q8IWA4 741 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 CCDC112Q8NEF3 446 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 KIAA1524Q8TCG1 905 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 DTNBP1Q96EV8 351 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 KIF12Q96FN5 646 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 SENP7Q9BQF6 1050 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 HOXC10Q9NYD6 342 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 NRBP1Q9UHY1 535 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 FBXO9Q9UK97 447 aaPredicted RBP7.53□□□□□ -1.2
MCF2-205ENST00000437564 ODF2LQ9ULJ1 636 aa7.53□□□□□ -1.2
MCF2-205ENST00000437564 MYO1BO43795 1136 aa7.52□□□□□ -1.21
MCF2-205ENST00000437564 RAB11FIP3O75154 756 aa7.52□□□□□ -1.21
MCF2-205ENST00000437564 PYGLP06737 847 aa7.52□□□□□ -1.21
MCF2-205ENST00000437564 MMEP08473 750 aa7.52□□□□□ -1.21
MCF2-205ENST00000437564 GPTP24298 496 aa7.52□□□□□ -1.21
MCF2-205ENST00000437564 HNRNPH1P31943 449 aaKnown RBP7.52□□□□□ -1.21
MCF2-205ENST00000437564 ANKRD45Q5TZF3 282 aa7.52□□□□□ -1.21
MCF2-205ENST00000437564 ERMNQ8TAM6 284 aa7.52□□□□□ -1.21
MCF2-205ENST00000437564 MPHOSPH6Q99547 160 aaKnown RBP7.52□□□□□ -1.21
MCF2-205ENST00000437564 MMADHCQ9H3L0 296 aaPredicted RBP7.52□□□□□ -1.21
MCF2-205ENST00000437564 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.52□□□□□ -1.21
MCF2-205ENST00000437564 SWAP70Q9UH65 585 aa7.52□□□□□ -1.21
MCF2-205ENST00000437564 MIA2Q96PC5 1412 aa7.52□□□□□ -1.21
MCF2-205ENST00000437564 MAPKBP1O60336 1514 aa7.52□□□□□ -1.21
MCF2-205ENST00000437564 RRBP1Q9P2E9 1410 aaKnown RBP7.51□□□□□ -1.21
MCF2-205ENST00000437564 CHUKO15111 745 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 HOXD10P28358 340 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 PPP4CP60510 307 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 AKNAD1Q5T1N1 836 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 UBE2Q1Q7Z7E8 422 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 PARP9Q8IXQ6 854 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 MYO1HQ8N1T3 1032 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 BICD2Q8TD16 824 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 ERO1AQ96HE7 468 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 UBXN6Q9BZV1 441 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 FHAD1B1AJZ9 1412 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 PTPRGP23470 1445 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 AHCYL1O43865 530 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 WDHD1O75717 1129 aaPredicted RBP7.51□□□□□ -1.21
MCF2-205ENST00000437564 CSB-PGBD3P0DP91 1061 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 ATICP31939 592 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 DCTN1Q14203 1278 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 CLPPQ16740 277 aaPredicted RBP7.51□□□□□ -1.21
MCF2-205ENST00000437564 CCDC92Q53HC0 331 aaPredicted RBP7.51□□□□□ -1.21
MCF2-205ENST00000437564 MYSM1Q5VVJ2 828 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 ARMC9Q7Z3E5 817 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 LRRC49Q8IUZ0 686 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 PDILTQ8N807 584 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 ATP11CQ8NB49 1132 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 B4GALNT2Q8NHY0 566 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 GIMAP1Q8WWP7 306 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 TRIM11Q96F44 468 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 SPOCK3Q9BQ16 436 aa7.51□□□□□ -1.21
MCF2-205ENST00000437564 SRRTQ9BXP5 876 aaKnown RBP7.51□□□□□ -1.21
MCF2-205ENST00000437564 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.51□□□□□ -1.21
MCF2-205ENST00000437564 BIN2Q9UBW5 565 aaPredicted RBP7.51□□□□□ -1.21
MCF2-205ENST00000437564 NPHP1O15259 732 aa7.5□□□□□ -1.21
MCF2-205ENST00000437564 CEP104O60308 925 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms