RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 MYH15Q9Y2K3 1946 aa16.25■□□□□ 0.19
COL6A3-207ENST00000433762 CPDO75976 1380 aa16.25■□□□□ 0.19
COL6A3-207ENST00000433762 PAPPAQ13219 1627 aa16.25■□□□□ 0.19
COL6A3-207ENST00000433762 DNM1Q05193 864 aaKnown RBP16.24■□□□□ 0.19
COL6A3-207ENST00000433762 AIMP1Q12904 312 aaKnown RBP16.24■□□□□ 0.19
COL6A3-207ENST00000433762 KDM4AO75164 1064 aa16.24■□□□□ 0.19
COL6A3-207ENST00000433762 ATF3P18847 181 aa16.24■□□□□ 0.19
COL6A3-207ENST00000433762 PTPN12Q05209 780 aaKnown RBP16.24■□□□□ 0.19
COL6A3-207ENST00000433762 GLIPR1L2Q4G1C9 344 aa16.24■□□□□ 0.19
COL6A3-207ENST00000433762 MYD88Q99836 296 aa16.24■□□□□ 0.19
COL6A3-207ENST00000433762 BOLA2Q9H3K6 86 aa16.24■□□□□ 0.19
COL6A3-207ENST00000433762 TLR7Q9NYK1 1049 aaKnown RBP16.24■□□□□ 0.19
COL6A3-207ENST00000433762 USP25Q9UHP3 1055 aa16.24■□□□□ 0.19
COL6A3-207ENST00000433762 PALLDQ8WX93 1383 aa16.24■□□□□ 0.19
COL6A3-207ENST00000433762 SH3TC1Q8TE82 1336 aa16.24■□□□□ 0.19
COL6A3-207ENST00000433762 CCDC192P0DO97 292 aa16.23■□□□□ 0.19
COL6A3-207ENST00000433762 TTC5Q8N0Z6 440 aa16.23■□□□□ 0.19
COL6A3-207ENST00000433762 ZNF496Q96IT1 587 aaPredicted RBP16.23■□□□□ 0.19
COL6A3-207ENST00000433762 HAUS7Q99871 368 aa16.23■□□□□ 0.19
COL6A3-207ENST00000433762 TNS3Q68CZ2 1445 aa16.23■□□□□ 0.19
COL6A3-207ENST00000433762 TOB2Q14106 344 aaPredicted RBP16.23■□□□□ 0.19
COL6A3-207ENST00000433762 PLBD2Q8NHP8 589 aa16.23■□□□□ 0.19
COL6A3-207ENST00000433762 CHMP4CQ96CF2 233 aa16.23■□□□□ 0.19
COL6A3-207ENST00000433762 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.23■□□□□ 0.19
COL6A3-207ENST00000433762 TJP1Q07157 1748 aa16.23■□□□□ 0.19
COL6A3-207ENST00000433762 HMGB1P09429 215 aaKnown RBP16.22■□□□□ 0.19
COL6A3-207ENST00000433762 FOXD4L6Q3SYB3 417 aaPredicted RBP16.22■□□□□ 0.19
COL6A3-207ENST00000433762 SASS6Q6UVJ0 657 aa16.22■□□□□ 0.19
COL6A3-207ENST00000433762 FOXD4L3Q6VB84 417 aaPredicted RBP16.22■□□□□ 0.19
COL6A3-207ENST00000433762 NFATC2IPQ8NCF5 419 aa16.22■□□□□ 0.19
COL6A3-207ENST00000433762 PIBF1Q8WXW3 757 aa16.22■□□□□ 0.19
COL6A3-207ENST00000433762 PDCL3Q9H2J4 239 aa16.22■□□□□ 0.19
COL6A3-207ENST00000433762 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.22■□□□□ 0.19
COL6A3-207ENST00000433762 LAMA4Q16363 1823 aa16.22■□□□□ 0.19
COL6A3-207ENST00000433762 VPS37CA5D8V6 355 aaPredicted RBP16.22■□□□□ 0.19
COL6A3-207ENST00000433762 CASP7P55210 303 aa16.22■□□□□ 0.19
COL6A3-207ENST00000433762 XPCQ01831 940 aaPredicted RBP16.22■□□□□ 0.19
COL6A3-207ENST00000433762 EPHA10Q5JZY3 1008 aa16.22■□□□□ 0.19
COL6A3-207ENST00000433762 LMOD2Q6P5Q4 547 aa16.22■□□□□ 0.19
COL6A3-207ENST00000433762 MTERF4Q7Z6M4 381 aaKnown RBP16.22■□□□□ 0.19
COL6A3-207ENST00000433762 LLPHQ9BRT6 129 aaKnown RBP16.22■□□□□ 0.19
COL6A3-207ENST00000433762 NLRP2Q9NX02 1062 aa16.22■□□□□ 0.19
COL6A3-207ENST00000433762 DBNLQ9UJU6 430 aaKnown RBP16.22■□□□□ 0.19
COL6A3-207ENST00000433762 XIRP1Q702N8 1843 aaKnown RBP16.22■□□□□ 0.19
COL6A3-207ENST00000433762 DYNC1I1O14576 645 aa16.21■□□□□ 0.19
COL6A3-207ENST00000433762 HCLS1P14317 486 aaPredicted RBP16.21■□□□□ 0.19
COL6A3-207ENST00000433762 RBM43Q6ZSC3 357 aaKnown RBP16.21■□□□□ 0.19
COL6A3-207ENST00000433762 DDX19AQ9NUU7 478 aaKnown RBP16.21■□□□□ 0.19
COL6A3-207ENST00000433762 ADCY5O95622 1261 aa16.21■□□□□ 0.19
COL6A3-207ENST00000433762 SLC39A6Q13433 755 aa16.21■□□□□ 0.19
COL6A3-207ENST00000433762 GTF3C6Q969F1 213 aa16.21■□□□□ 0.19
COL6A3-207ENST00000433762 CAVIN2O95810 425 aa16.2■□□□□ 0.18
COL6A3-207ENST00000433762 MCMDC2Q4G0Z9 681 aa16.2■□□□□ 0.18
COL6A3-207ENST00000433762 TTC6Q86TZ1 520 aa16.2■□□□□ 0.18
COL6A3-207ENST00000433762 ZNF589Q86UQ0 364 aaPredicted RBP16.2■□□□□ 0.18
COL6A3-207ENST00000433762 LARP6Q9BRS8 491 aaKnown RBP16.2■□□□□ 0.18
COL6A3-207ENST00000433762 SIL1Q9H173 461 aa16.2■□□□□ 0.18
COL6A3-207ENST00000433762 ZSCAN16Q9H4T2 348 aaPredicted RBP16.2■□□□□ 0.18
COL6A3-207ENST00000433762 ZNF609O15014 1411 aa16.2■□□□□ 0.18
COL6A3-207ENST00000433762 MYL6BP14649 208 aa16.2■□□□□ 0.18
COL6A3-207ENST00000433762 CADPS2Q86UW7 1296 aa16.2■□□□□ 0.18
COL6A3-207ENST00000433762 NECAB1Q8N987 351 aa16.2■□□□□ 0.18
COL6A3-207ENST00000433762 NEK1Q96PY6 1258 aa16.2■□□□□ 0.18
COL6A3-207ENST00000433762 R3HCC1Q9Y3T6 440 aaKnown RBP16.2■□□□□ 0.18
COL6A3-207ENST00000433762 MAP3K11Q16584 847 aa16.19■□□□□ 0.18
COL6A3-207ENST00000433762 CDC37L1Q7L3B6 337 aa16.19■□□□□ 0.18
COL6A3-207ENST00000433762 KBTBD3Q8NAB2 608 aa16.19■□□□□ 0.18
COL6A3-207ENST00000433762 PRIMPOLQ96LW4 560 aa16.19■□□□□ 0.18
COL6A3-207ENST00000433762 HELLSQ9NRZ9 838 aa16.19■□□□□ 0.18
COL6A3-207ENST00000433762 ATG3Q9NT62 314 aa16.19■□□□□ 0.18
COL6A3-207ENST00000433762 SPTLC3Q9NUV7 552 aa16.19■□□□□ 0.18
COL6A3-207ENST00000433762 ATL3Q6DD88 541 aa16.19■□□□□ 0.18
COL6A3-207ENST00000433762 FAM200AQ8TCP9 573 aa16.19■□□□□ 0.18
COL6A3-207ENST00000433762 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.19■□□□□ 0.18
COL6A3-207ENST00000433762 NUP62CLQ9H1M0 184 aa16.19■□□□□ 0.18
COL6A3-207ENST00000433762 GOLGA6L6A8MZA4 724 aa16.18■□□□□ 0.18
COL6A3-207ENST00000433762 H7C1W4 665 aa16.18■□□□□ 0.18
COL6A3-207ENST00000433762 ZC3H6P61129 1189 aaKnown RBP16.18■□□□□ 0.18
COL6A3-207ENST00000433762 TFCP2Q12800 502 aa16.18■□□□□ 0.18
COL6A3-207ENST00000433762 DSCC1Q9BVC3 393 aa16.18■□□□□ 0.18
COL6A3-207ENST00000433762 KIF3AQ9Y496 699 aa16.18■□□□□ 0.18
COL6A3-207ENST00000433762 USP16Q9Y5T5 823 aa16.18■□□□□ 0.18
COL6A3-207ENST00000433762 CYP27B1O15528 508 aa16.18■□□□□ 0.18
COL6A3-207ENST00000433762 HMGN5P82970 282 aaKnown RBP16.18■□□□□ 0.18
COL6A3-207ENST00000433762 GIMAP6Q6P9H5 292 aa16.17■□□□□ 0.18
COL6A3-207ENST00000433762 UBE3BQ7Z3V4 1068 aa16.17■□□□□ 0.18
COL6A3-207ENST00000433762 SMARCC2Q8TAQ2 1214 aa16.17■□□□□ 0.18
COL6A3-207ENST00000433762 AGXT2Q9BYV1 514 aa16.17■□□□□ 0.18
COL6A3-207ENST00000433762 A0A087WZG4 1122 aa16.16■□□□□ 0.18
COL6A3-207ENST00000433762 FBXL16Q8N461 479 aa16.16■□□□□ 0.18
COL6A3-207ENST00000433762 SPATA32Q96LK8 384 aa16.16■□□□□ 0.18
COL6A3-207ENST00000433762 FBXO3Q9UK99 471 aa16.16■□□□□ 0.18
COL6A3-207ENST00000433762 CIAO1O76071 339 aa16.16■□□□□ 0.18
COL6A3-207ENST00000433762 CABP4P57796 275 aa16.16■□□□□ 0.18
COL6A3-207ENST00000433762 NAA16Q6N069 864 aaPredicted RBP16.16■□□□□ 0.18
COL6A3-207ENST00000433762 KLHDC4Q8TBB5 520 aa16.16■□□□□ 0.18
COL6A3-207ENST00000433762 UQCRHLA0A096LP55 91 aa16.15■□□□□ 0.18
COL6A3-207ENST00000433762 PFKFB2O60825 505 aa16.15■□□□□ 0.18
COL6A3-207ENST00000433762 UQCRHP07919 91 aa16.15■□□□□ 0.18
COL6A3-207ENST00000433762 IL15P40933 162 aaPredicted RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms