RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 CCDC144BQ3MJ40 725 aa10.23□□□□□ -0.77
USP40-203ENST00000427112 PI16Q6UXB8 463 aa10.23□□□□□ -0.77
USP40-203ENST00000427112 ANKRD24Q8TF21 1146 aa10.23□□□□□ -0.77
USP40-203ENST00000427112 PIBF1Q8WXW3 757 aa10.23□□□□□ -0.77
USP40-203ENST00000427112 MRVI1Q9Y6F6 885 aa10.23□□□□□ -0.77
USP40-203ENST00000427112 C11orf57Q6ZUT1 292 aaPredicted RBP10.23□□□□□ -0.77
USP40-203ENST00000427112 KAZALD1Q96I82 304 aa10.23□□□□□ -0.77
USP40-203ENST00000427112 DBF4Q9UBU7 674 aaPredicted RBP10.23□□□□□ -0.77
USP40-203ENST00000427112 CLIP2Q9UDT6 1046 aa10.23□□□□□ -0.77
USP40-203ENST00000427112 ATP6V1DQ9Y5K8 247 aa10.23□□□□□ -0.77
USP40-203ENST00000427112 USP32Q8NFA0 1604 aa10.22□□□□□ -0.77
USP40-203ENST00000427112 A0A087WZG4 1122 aa10.22□□□□□ -0.77
USP40-203ENST00000427112 A0A1B0GVL5 298 aa10.22□□□□□ -0.77
USP40-203ENST00000427112 ERICH4A6NGS2 130 aa10.22□□□□□ -0.77
USP40-203ENST00000427112 GOLGA6L19H0YKK7 550 aa10.22□□□□□ -0.77
USP40-203ENST00000427112 TNNT1P13805 278 aa10.22□□□□□ -0.77
USP40-203ENST00000427112 PGBD1Q96JS3 809 aa10.22□□□□□ -0.77
USP40-203ENST00000427112 SBNO1A3KN83 1393 aa10.22□□□□□ -0.77
USP40-203ENST00000427112 CREBRFQ8IUR6 639 aa10.22□□□□□ -0.77
USP40-203ENST00000427112 ADCY9O60503 1353 aa10.22□□□□□ -0.77
USP40-203ENST00000427112 PREX1Q8TCU6 1659 aa10.22□□□□□ -0.77
USP40-203ENST00000427112 DYNC1I1O14576 645 aa10.22□□□□□ -0.77
USP40-203ENST00000427112 LMBR1LQ6UX01 489 aa10.22□□□□□ -0.77
USP40-203ENST00000427112 SDF4Q9BRK5 362 aa10.22□□□□□ -0.77
USP40-203ENST00000427112 SF3A1Q15459 793 aaKnown RBP10.21□□□□□ -0.77
USP40-203ENST00000427112 ZNF771Q7L3S4 317 aaPredicted RBP10.21□□□□□ -0.77
USP40-203ENST00000427112 MYRIPQ8NFW9 859 aa10.21□□□□□ -0.77
USP40-203ENST00000427112 LEO1Q8WVC0 666 aaPredicted RBP10.21□□□□□ -0.77
USP40-203ENST00000427112 ZNF496Q96IT1 587 aaPredicted RBP10.21□□□□□ -0.77
USP40-203ENST00000427112 ZFP91Q96JP5 570 aaPredicted RBP10.21□□□□□ -0.77
USP40-203ENST00000427112 DBNLQ9UJU6 430 aaKnown RBP10.21□□□□□ -0.77
USP40-203ENST00000427112 DENND2AQ9ULE3 1009 aa10.21□□□□□ -0.77
USP40-203ENST00000427112 TMEM2Q9UHN6 1383 aa10.21□□□□□ -0.77
USP40-203ENST00000427112 CLTCQ00610 1675 aaKnown RBP10.21□□□□□ -0.77
USP40-203ENST00000427112 PTPRUQ92729 1446 aa10.21□□□□□ -0.77
USP40-203ENST00000427112 RNMTO43148 476 aaKnown RBP10.21□□□□□ -0.77
USP40-203ENST00000427112 GIGYF1O75420 1035 aaPredicted RBP10.21□□□□□ -0.77
USP40-203ENST00000427112 SMC2O95347 1197 aa10.21□□□□□ -0.77
USP40-203ENST00000427112 IGKV5-2P06315 115 aa10.21□□□□□ -0.77
USP40-203ENST00000427112 MARCKSP29966 332 aaPredicted RBP10.21□□□□□ -0.77
USP40-203ENST00000427112 NEXNQ0ZGT2 675 aa10.21□□□□□ -0.77
USP40-203ENST00000427112 TOB2Q14106 344 aaPredicted RBP10.21□□□□□ -0.77
USP40-203ENST00000427112 POLA2Q14181 598 aa10.21□□□□□ -0.77
USP40-203ENST00000427112 PLEKHO1Q53GL0 409 aaPredicted RBP10.21□□□□□ -0.77
USP40-203ENST00000427112 SPECC1Q5M775 1068 aa10.21□□□□□ -0.77
USP40-203ENST00000427112 CACTINQ8WUQ7 758 aaKnown RBP10.21□□□□□ -0.77
USP40-203ENST00000427112 EVI5LQ96CN4 794 aa10.21□□□□□ -0.77
USP40-203ENST00000427112 KSR2Q6VAB6 950 aa10.21□□□□□ -0.78
USP40-203ENST00000427112 ST7Q9NRC1 585 aa10.21□□□□□ -0.78
USP40-203ENST00000427112 APPP05067 770 aa10.2□□□□□ -0.78
USP40-203ENST00000427112 NECTIN1Q15223 517 aa10.2□□□□□ -0.78
USP40-203ENST00000427112 CCAR1Q8IX12 1150 aaKnown RBP10.2□□□□□ -0.78
USP40-203ENST00000427112 SYNE4Q8N205 404 aa10.2□□□□□ -0.78
USP40-203ENST00000427112 INCENPQ9NQS7 918 aa10.2□□□□□ -0.78
USP40-203ENST00000427112 TOMM22Q9NS69 142 aa10.2□□□□□ -0.78
USP40-203ENST00000427112 GCP02774 474 aa10.2□□□□□ -0.78
USP40-203ENST00000427112 AIFM3Q96NN9 605 aa10.2□□□□□ -0.78
USP40-203ENST00000427112 ZSWIM6Q9HCJ5 1215 aa10.2□□□□□ -0.78
USP40-203ENST00000427112 CYP21A2P08686 494 aa10.2□□□□□ -0.78
USP40-203ENST00000427112 AOPEPQ8N6M6 819 aa10.2□□□□□ -0.78
USP40-203ENST00000427112 NEK1Q96PY6 1258 aa10.2□□□□□ -0.78
USP40-203ENST00000427112 PUS3Q9BZE2 481 aaKnown RBP10.2□□□□□ -0.78
USP40-203ENST00000427112 SNAP23O00161 211 aa10.19□□□□□ -0.78
USP40-203ENST00000427112 FAM200AQ8TCP9 573 aa10.19□□□□□ -0.78
USP40-203ENST00000427112 ARHGAP31Q2M1Z3 1444 aa10.19□□□□□ -0.78
USP40-203ENST00000427112 UBE2Q2LH0YL09 131 aa10.19□□□□□ -0.78
USP40-203ENST00000427112 ZBTB22O15209 634 aa10.19□□□□□ -0.78
USP40-203ENST00000427112 ZRSR1Q15695 479 aaKnown RBP10.19□□□□□ -0.78
USP40-203ENST00000427112 RAPGEF4Q8WZA2 1011 aa10.19□□□□□ -0.78
USP40-203ENST00000427112 MYL10Q9BUA6 226 aa10.19□□□□□ -0.78
USP40-203ENST00000427112 RPS6KB1P23443 525 aa10.19□□□□□ -0.78
USP40-203ENST00000427112 SCRN1Q12765 414 aa10.19□□□□□ -0.78
USP40-203ENST00000427112 LRRC24Q50LG9 513 aa10.19□□□□□ -0.78
USP40-203ENST00000427112 HS1BP3Q53T59 392 aa10.19□□□□□ -0.78
USP40-203ENST00000427112 HSP90AB4PQ58FF6 505 aa10.19□□□□□ -0.78
USP40-203ENST00000427112 RNF20Q5VTR2 975 aa10.19□□□□□ -0.78
USP40-203ENST00000427112 STOX1Q6ZVD7 989 aa10.19□□□□□ -0.78
USP40-203ENST00000427112 TTC5Q8N0Z6 440 aa10.19□□□□□ -0.78
USP40-203ENST00000427112 FSIP1Q8NA03 581 aa10.19□□□□□ -0.78
USP40-203ENST00000427112 KIAA1524Q8TCG1 905 aa10.19□□□□□ -0.78
USP40-203ENST00000427112 USP28Q96RU2 1077 aa10.19□□□□□ -0.78
USP40-203ENST00000427112 OVOS2A0A0J9YW53 1432 aa10.18□□□□□ -0.78
USP40-203ENST00000427112 A1BGP04217 495 aa10.18□□□□□ -0.78
USP40-203ENST00000427112 GPTP24298 496 aa10.18□□□□□ -0.78
USP40-203ENST00000427112 OVOS2Q6IE36 1432 aa10.18□□□□□ -0.78
USP40-203ENST00000427112 CCAR2Q8N163 923 aaKnown RBP10.18□□□□□ -0.78
USP40-203ENST00000427112 GOLPH3LQ9H4A5 285 aa10.18□□□□□ -0.78
USP40-203ENST00000427112 SLC4A8Q2Y0W8 1093 aa10.18□□□□□ -0.78
USP40-203ENST00000427112 EPC1Q9H2F5 836 aa10.18□□□□□ -0.78
USP40-203ENST00000427112 ARHGEF10O15013 1369 aa10.18□□□□□ -0.78
USP40-203ENST00000427112 KIF24Q5T7B8 1368 aa10.18□□□□□ -0.78
USP40-203ENST00000427112 GOLGA6L6A8MZA4 724 aa10.18□□□□□ -0.78
USP40-203ENST00000427112 COBLO75128 1261 aa10.18□□□□□ -0.78
USP40-203ENST00000427112 LMOD1P29536 600 aaPredicted RBP10.18□□□□□ -0.78
USP40-203ENST00000427112 TTLL7Q6ZT98 887 aa10.18□□□□□ -0.78
USP40-203ENST00000427112 CMTR1Q8N1G2 835 aaKnown RBP10.18□□□□□ -0.78
USP40-203ENST00000427112 HELBQ8NG08 1087 aaPredicted RBP10.18□□□□□ -0.78
USP40-203ENST00000427112 PEAK1Q9H792 1746 aa10.18□□□□□ -0.78
USP40-203ENST00000427112 PSMA5P28066 241 aa10.17□□□□□ -0.78
USP40-203ENST00000427112 MAP4K1Q92918 833 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms