RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 SRGNP10124 158 aa19.53■□□□□ 0.72
SHOX2-202ENST00000425436 LAMB2P55268 1798 aa19.52■□□□□ 0.72
SHOX2-202ENST00000425436 ITPRIPQ8IWB1 547 aa19.52■□□□□ 0.72
SHOX2-202ENST00000425436 CCDC85AQ96PX6 553 aaPredicted RBP19.52■□□□□ 0.72
SHOX2-202ENST00000425436 COL11A2P13942 1736 aaPredicted RBP19.52■□□□□ 0.72
SHOX2-202ENST00000425436 CDHR2Q9BYE9 1310 aa19.52■□□□□ 0.71
SHOX2-202ENST00000425436 PDE8AO60658 829 aa19.51■□□□□ 0.71
SHOX2-202ENST00000425436 IGHDP01880 384 aa19.5■□□□□ 0.71
SHOX2-202ENST00000425436 CRY2Q49AN0 593 aa19.5■□□□□ 0.71
SHOX2-202ENST00000425436 RPGRQ92834 1020 aaKnown RBP19.5■□□□□ 0.71
SHOX2-202ENST00000425436 MASTLQ96GX5 879 aa19.5■□□□□ 0.71
SHOX2-202ENST00000425436 PIM2Q9P1W9 311 aa19.5■□□□□ 0.71
SHOX2-202ENST00000425436 TAF1P21675 1872 aa19.49■□□□□ 0.71
SHOX2-202ENST00000425436 NPR1P16066 1061 aa19.49■□□□□ 0.71
SHOX2-202ENST00000425436 EPHA10Q5JZY3 1008 aa19.49■□□□□ 0.71
SHOX2-202ENST00000425436 SUCLG2Q96I99 432 aa19.49■□□□□ 0.71
SHOX2-202ENST00000425436 MEIS3Q99687 375 aa19.49■□□□□ 0.71
SHOX2-202ENST00000425436 PDZRN3Q9UPQ7 1066 aa19.49■□□□□ 0.71
SHOX2-202ENST00000425436 RIC1Q4ADV7 1423 aa19.49■□□□□ 0.71
SHOX2-202ENST00000425436 UTYO14607 1347 aa19.49■□□□□ 0.71
SHOX2-202ENST00000425436 HSP90B1P14625 803 aaKnown RBP19.48■□□□□ 0.71
SHOX2-202ENST00000425436 FOXO4P98177 505 aa19.48■□□□□ 0.71
SHOX2-202ENST00000425436 HDAC1Q13547 482 aaPredicted RBP19.48■□□□□ 0.71
SHOX2-202ENST00000425436 SF3B3Q15393 1217 aaKnown RBP19.48■□□□□ 0.71
SHOX2-202ENST00000425436 KAZALD1Q96I82 304 aa19.48■□□□□ 0.71
SHOX2-202ENST00000425436 ZBTB40Q9NUA8 1239 aa19.48■□□□□ 0.71
SHOX2-202ENST00000425436 PCDHB15Q9Y5E8 787 aa19.48■□□□□ 0.71
SHOX2-202ENST00000425436 CACNA1SQ13698 1873 aa19.48■□□□□ 0.71
SHOX2-202ENST00000425436 BRCA1P38398 1863 aaKnown RBP19.47■□□□□ 0.71
SHOX2-202ENST00000425436 CTSWP56202 376 aa19.47■□□□□ 0.71
SHOX2-202ENST00000425436 STYK1Q6J9G0 422 aa19.47■□□□□ 0.71
SHOX2-202ENST00000425436 TTLL11Q8NHH1 800 aa19.47■□□□□ 0.71
SHOX2-202ENST00000425436 PLA2G12BQ9BX93 195 aa19.47■□□□□ 0.71
SHOX2-202ENST00000425436 BCS1LQ9Y276 419 aa19.47■□□□□ 0.71
SHOX2-202ENST00000425436 MYH3P11055 1940 aa19.47■□□□□ 0.71
SHOX2-202ENST00000425436 DLEC1Q9Y238 1755 aa19.47■□□□□ 0.71
SHOX2-202ENST00000425436 HOXA10P31260 410 aaPredicted RBP19.46■□□□□ 0.71
SHOX2-202ENST00000425436 TTLL6Q8N841 843 aa19.46■□□□□ 0.71
SHOX2-202ENST00000425436 RBM17Q96I25 401 aaKnown RBP19.46■□□□□ 0.71
SHOX2-202ENST00000425436 ZNF219Q9P2Y4 722 aaPredicted RBP19.46■□□□□ 0.71
SHOX2-202ENST00000425436 UTRNP46939 3433 aa19.46■□□□□ 0.71
SHOX2-202ENST00000425436 UBTFL1P0CB47 393 aaPredicted RBP19.46■□□□□ 0.71
SHOX2-202ENST00000425436 DALRD3Q5D0E6 543 aaKnown RBP19.46■□□□□ 0.71
SHOX2-202ENST00000425436 DDX46Q7L014 1031 aaKnown RBP19.46■□□□□ 0.71
SHOX2-202ENST00000425436 SEC31BQ9NQW1 1179 aa19.46■□□□□ 0.71
SHOX2-202ENST00000425436 SLX4Q8IY92 1834 aa19.45■□□□□ 0.7
SHOX2-202ENST00000425436 PDE4AP27815 886 aa19.45■□□□□ 0.7
SHOX2-202ENST00000425436 ALDH1B1P30837 517 aa19.45■□□□□ 0.7
SHOX2-202ENST00000425436 CCDC152Q4G0S7 254 aa19.45■□□□□ 0.7
SHOX2-202ENST00000425436 LMBR1LQ6UX01 489 aa19.45■□□□□ 0.7
SHOX2-202ENST00000425436 CNKSR1Q969H4 720 aa19.45■□□□□ 0.7
SHOX2-202ENST00000425436 BICC1Q9H694 974 aaKnown RBP19.45■□□□□ 0.7
SHOX2-202ENST00000425436 GREM2Q9H772 168 aa19.45■□□□□ 0.7
SHOX2-202ENST00000425436 CHMP3Q9Y3E7 222 aa19.45■□□□□ 0.7
SHOX2-202ENST00000425436 ZBTB7BO15156 539 aaPredicted RBP19.44■□□□□ 0.7
SHOX2-202ENST00000425436 CSF1RP07333 972 aa19.44■□□□□ 0.7
SHOX2-202ENST00000425436 YBX3P16989 372 aaKnown RBP eCLIP19.44■□□□□ 0.7
SHOX2-202ENST00000425436 GPR162Q16538 588 aa19.44■□□□□ 0.7
SHOX2-202ENST00000425436 PRPF40BQ6NWY9 871 aaKnown RBP19.44■□□□□ 0.7
SHOX2-202ENST00000425436 CRAMP1Q96RY5 1269 aa19.44■□□□□ 0.7
SHOX2-202ENST00000425436 BACH2Q9BYV9 841 aa19.44■□□□□ 0.7
SHOX2-202ENST00000425436 LRRFIP2Q9Y608 721 aaKnown RBP19.44■□□□□ 0.7
SHOX2-202ENST00000425436 GNAI3P08754 354 aa19.43■□□□□ 0.7
SHOX2-202ENST00000425436 SLC51AQ86UW1 340 aa19.43■□□□□ 0.7
SHOX2-202ENST00000425436 CELF1Q92879 486 aaKnown RBP19.43■□□□□ 0.7
SHOX2-202ENST00000425436 COL4A1P02462 1669 aa19.42■□□□□ 0.7
SHOX2-202ENST00000425436 FAM161AQ3B820 660 aa19.42■□□□□ 0.7
SHOX2-202ENST00000425436 OLFM4Q6UX06 510 aa19.42■□□□□ 0.7
SHOX2-202ENST00000425436 ANKRD44Q8N8A2 993 aa19.42■□□□□ 0.7
SHOX2-202ENST00000425436 C21orf2O43822 256 aa19.41■□□□□ 0.7
SHOX2-202ENST00000425436 C1orf115Q9H7X2 142 aa19.41■□□□□ 0.7
SHOX2-202ENST00000425436 ITGA6P23229 1130 aa19.41■□□□□ 0.7
SHOX2-202ENST00000425436 GRAPQ13588 217 aa19.41■□□□□ 0.7
SHOX2-202ENST00000425436 GRAPLQ8TC17 118 aaPredicted RBP19.41■□□□□ 0.7
SHOX2-202ENST00000425436 GNAI2P04899 355 aa19.4■□□□□ 0.7
SHOX2-202ENST00000425436 PPEF1O14829 653 aaPredicted RBP19.39■□□□□ 0.69
SHOX2-202ENST00000425436 BBOX1O75936 387 aa19.39■□□□□ 0.69
SHOX2-202ENST00000425436 RPS8P62241 208 aaKnown RBP19.39■□□□□ 0.69
SHOX2-202ENST00000425436 RABL6Q3YEC7 729 aaPredicted RBP19.39■□□□□ 0.69
SHOX2-202ENST00000425436 IFIT5Q13325 482 aaKnown RBP19.38■□□□□ 0.69
SHOX2-202ENST00000425436 CCDC57Q2TAC2 916 aa19.38■□□□□ 0.69
SHOX2-202ENST00000425436 C7orf43Q8WVR3 580 aa19.38■□□□□ 0.69
SHOX2-202ENST00000425436 ZNF594Q96JF6 807 aaPredicted RBP19.38■□□□□ 0.69
SHOX2-202ENST00000425436 HDAC5Q9UQL6 1122 aa19.38■□□□□ 0.69
SHOX2-202ENST00000425436 ANKRD18BA2A2Z9 1011 aa19.37■□□□□ 0.69
SHOX2-202ENST00000425436 ANKRD18AQ8IVF6 992 aa19.37■□□□□ 0.69
SHOX2-202ENST00000425436 SPEF2Q9C093 1822 aa19.37■□□□□ 0.69
SHOX2-202ENST00000425436 ARFGEF1Q9Y6D6 1849 aa19.37■□□□□ 0.69
SHOX2-202ENST00000425436 RTL9Q8NET4 1388 aa19.37■□□□□ 0.69
SHOX2-202ENST00000425436 ANP32AP39687 249 aaKnown RBP19.36■□□□□ 0.69
SHOX2-202ENST00000425436 ARHGAP27Q6ZUM4 889 aa19.36■□□□□ 0.69
SHOX2-202ENST00000425436 SMC5Q8IY18 1101 aa19.36■□□□□ 0.69
SHOX2-202ENST00000425436 CDC5LQ99459 802 aaKnown RBP19.36■□□□□ 0.69
SHOX2-202ENST00000425436 RGS3P49796 1198 aa19.35■□□□□ 0.69
SHOX2-202ENST00000425436 KLHDC4Q8TBB5 520 aa19.35■□□□□ 0.69
SHOX2-202ENST00000425436 ATP6V0A2Q9Y487 856 aa19.35■□□□□ 0.69
SHOX2-202ENST00000425436 DCAF8L1A6NGE4 600 aa19.35■□□□□ 0.69
SHOX2-202ENST00000425436 GCC1Q96CN9 775 aa19.35■□□□□ 0.69
SHOX2-202ENST00000425436 IGHMBP2P38935 993 aaKnown RBP19.34■□□□□ 0.69
SHOX2-202ENST00000425436 TAF7LQ5H9L4 462 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms