RNA–Protein interactions for RNA: ENST00000418170.5

HMGXB4-202, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 4,216 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-202ENST00000418170 PRAM1Q96QH2 718 aa9.4□□□□□ -0.9
HMGXB4-202ENST00000418170 IL1RAPL2Q9NP60 686 aa9.4□□□□□ -0.9
HMGXB4-202ENST00000418170 IMPACTQ9P2X3 320 aa9.4□□□□□ -0.9
HMGXB4-202ENST00000418170 SOS1Q07889 1333 aaPredicted RBP9.4□□□□□ -0.9
HMGXB4-202ENST00000418170 OAS2P29728 719 aaKnown RBP9.4□□□□□ -0.9
HMGXB4-202ENST00000418170 SRLQ86TD4 932 aa9.4□□□□□ -0.9
HMGXB4-202ENST00000418170 NUTM1Q86Y26 1132 aa9.4□□□□□ -0.9
HMGXB4-202ENST00000418170 ZBTB9Q96C00 473 aa9.4□□□□□ -0.9
HMGXB4-202ENST00000418170 TPCN1Q9ULQ1 816 aa9.4□□□□□ -0.9
HMGXB4-202ENST00000418170 GIGYF1O75420 1035 aaPredicted RBP9.4□□□□□ -0.91
HMGXB4-202ENST00000418170 ICE2Q659A1 982 aa9.4□□□□□ -0.91
HMGXB4-202ENST00000418170 CWC27Q6UX04 472 aaKnown RBP9.4□□□□□ -0.91
HMGXB4-202ENST00000418170 FBXO18Q8NFZ0 1043 aa9.4□□□□□ -0.91
HMGXB4-202ENST00000418170 CDK19Q9BWU1 502 aa9.4□□□□□ -0.91
HMGXB4-202ENST00000418170 PEAK1Q9H792 1746 aa9.4□□□□□ -0.91
HMGXB4-202ENST00000418170 BECN2A8MW95 431 aa9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 DHX40Q8IX18 779 aaKnown RBP9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 PSD3Q9NYI0 1048 aa9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 CTAGE5O15320 804 aa9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 TBC1D8O95759 1140 aa9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 NBPF11Q86T75 865 aa9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 ZCCHC17Q9NP64 241 aaKnown RBP9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 PHLPP2Q6ZVD8 1323 aa9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 ADCY9O60503 1353 aa9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 TADA3O75528 432 aa9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 TPM1P09493 284 aa9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 GTF2A1P52655 376 aaPredicted RBP9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 CCDC158Q5M9N0 1113 aa9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 IQUBQ8NA54 791 aa9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 SRRTQ9BXP5 876 aaKnown RBP9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 SASH3O75995 380 aa9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 ETF1P62495 437 aaKnown RBP9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 SMC1AQ14683 1233 aaKnown RBP9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 MCM10Q7L590 875 aa9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 REXO1L1PQ8IX06 675 aa9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 CCDC150Q8NCX0 1101 aa9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 EXOC4Q96A65 974 aa9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 AK7Q96M32 723 aa9.39□□□□□ -0.91
HMGXB4-202ENST00000418170 EFCAB8A8MWE9 144 aa9.38□□□□□ -0.91
HMGXB4-202ENST00000418170 RAB11FIP3O75154 756 aa9.38□□□□□ -0.91
HMGXB4-202ENST00000418170 SEC31AO94979 1220 aaKnown RBP9.38□□□□□ -0.91
HMGXB4-202ENST00000418170 PTH1RQ03431 593 aa9.38□□□□□ -0.91
HMGXB4-202ENST00000418170 PRPF40BQ6NWY9 871 aaKnown RBP9.38□□□□□ -0.91
HMGXB4-202ENST00000418170 RRP15Q9Y3B9 282 aaKnown RBP9.38□□□□□ -0.91
HMGXB4-202ENST00000418170 CRB1P82279 1406 aa9.38□□□□□ -0.91
HMGXB4-202ENST00000418170 GYS2P54840 703 aa9.38□□□□□ -0.91
HMGXB4-202ENST00000418170 STAG3Q9UJ98 1225 aa9.38□□□□□ -0.91
HMGXB4-202ENST00000418170 CEP170BQ9Y4F5 1589 aaPredicted RBP9.38□□□□□ -0.91
HMGXB4-202ENST00000418170 LARP1Q6PKG0 1096 aaKnown RBP9.38□□□□□ -0.91
HMGXB4-202ENST00000418170 SSH3Q8TE77 659 aa9.38□□□□□ -0.91
HMGXB4-202ENST00000418170 SYTL4Q96C24 671 aaPredicted RBP9.38□□□□□ -0.91
HMGXB4-202ENST00000418170 BRMS1Q9HCU9 246 aa9.38□□□□□ -0.91
HMGXB4-202ENST00000418170 PLEKHG2Q9H7P9 1386 aa9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 NECTIN1Q15223 517 aa9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 CC2D1AQ6P1N0 951 aaPredicted RBP9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 MNS1Q8NEH6 495 aa9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 RUFY2Q8WXA3 655 aa9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 TMX1Q9H3N1 280 aa9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 MYH15Q9Y2K3 1946 aa9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 FMN2Q9NZ56 1722 aa9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 MMP14P50281 582 aa9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 DHX8Q14562 1220 aaKnown RBP9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 ARMCX5Q6P1M9 558 aa9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 GOLGA6L1Q8N7Z2 621 aa9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 ANO10Q9NW15 660 aa9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 XIRP1Q702N8 1843 aaKnown RBP9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 CACNA1FO60840 1977 aa9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 FAM208AQ9UK61 1670 aaKnown RBP9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 SOX12O15370 315 aa9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 GORABQ5T7V8 394 aa9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 EDC4Q6P2E9 1401 aaKnown RBP9.37□□□□□ -0.91
HMGXB4-202ENST00000418170 ZKSCAN1P17029 563 aaPredicted RBP9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 LRRFIP1Q32MZ4 808 aaKnown RBP9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 DNAI1Q9UI46 699 aa9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 ADAM21Q9UKJ8 722 aa9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 SFPQP23246 707 aaKnown RBP eCLIP9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 HOMER1Q86YM7 354 aa9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 CEP57L1Q8IYX8 460 aa9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 RHPN1Q8TCX5 695 aa9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 MAP3K5Q99683 1374 aa9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 TTC41PQ6P2S7 1318 aa9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 CCP110O43303 1012 aa9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 NRDCO43847 1150 aa9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 GUCY2CP25092 1073 aa9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 ACTN2P35609 894 aa9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 AOPEPQ8N6M6 819 aa9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 SECISBP2LQ93073 1101 aaKnown RBP9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 SLC26A8Q96RN1 970 aa9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 USP42Q9H9J4 1324 aaKnown RBP9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 A0A1B0GUL7 405 aa9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 RESTQ13127 1097 aa9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 ANKRD1Q15327 319 aa9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 TRIM65Q6PJ69 517 aa9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 CFAP45Q9UL16 551 aa9.36□□□□□ -0.91
HMGXB4-202ENST00000418170 PIK3C2AO00443 1686 aa9.35□□□□□ -0.91
HMGXB4-202ENST00000418170 EVCP57679 992 aa9.35□□□□□ -0.91
HMGXB4-202ENST00000418170 NOM1Q5C9Z4 860 aaKnown RBP9.35□□□□□ -0.91
HMGXB4-202ENST00000418170 GPR161Q8N6U8 529 aaKnown RBP9.35□□□□□ -0.91
HMGXB4-202ENST00000418170 DDX54Q8TDD1 881 aaKnown RBP9.35□□□□□ -0.91
HMGXB4-202ENST00000418170 CARD6Q9BX69 1037 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms