RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 SUCLG2Q96I99 432 aa10.14□□□□□ -0.79
SYNE1-211ENST00000413186 CYP46A1Q9Y6A2 500 aa10.14□□□□□ -0.79
SYNE1-211ENST00000413186 NRKQ7Z2Y5 1582 aa10.14□□□□□ -0.79
SYNE1-211ENST00000413186 H0YIN7 160 aa10.14□□□□□ -0.79
SYNE1-211ENST00000413186 PDE1AP54750 535 aa10.14□□□□□ -0.79
SYNE1-211ENST00000413186 GSTO1P78417 241 aa10.14□□□□□ -0.79
SYNE1-211ENST00000413186 TTC22Q5TAA0 569 aa10.14□□□□□ -0.79
SYNE1-211ENST00000413186 U3KPZ7 1027 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-211ENST00000413186 DHX16O60231 1041 aaKnown RBP10.13□□□□□ -0.79
SYNE1-211ENST00000413186 IMMTQ16891 758 aaKnown RBP10.13□□□□□ -0.79
SYNE1-211ENST00000413186 NSFL1CQ9UNZ2 370 aaKnown RBP10.13□□□□□ -0.79
SYNE1-211ENST00000413186 GOLIM4O00461 696 aa10.13□□□□□ -0.79
SYNE1-211ENST00000413186 RAD21O60216 631 aa10.13□□□□□ -0.79
SYNE1-211ENST00000413186 BAG3O95817 575 aa10.13□□□□□ -0.79
SYNE1-211ENST00000413186 PDE6BP35913 854 aa10.13□□□□□ -0.79
SYNE1-211ENST00000413186 PLCB2Q00722 1185 aa10.13□□□□□ -0.79
SYNE1-211ENST00000413186 PROSER3Q2NL68 480 aa10.13□□□□□ -0.79
SYNE1-211ENST00000413186 USPL1Q5W0Q7 1092 aa10.13□□□□□ -0.79
SYNE1-211ENST00000413186 NEK4P51957 841 aa10.13□□□□□ -0.79
SYNE1-211ENST00000413186 ALDH1B1P30837 517 aa10.13□□□□□ -0.79
SYNE1-211ENST00000413186 MARCH10Q8NA82 808 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-211ENST00000413186 SMC3Q9UQE7 1217 aa10.13□□□□□ -0.79
SYNE1-211ENST00000413186 CHD2O14647 1828 aaKnown RBP10.12□□□□□ -0.79
SYNE1-211ENST00000413186 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-211ENST00000413186 MAP2P11137 1827 aaKnown RBP10.12□□□□□ -0.79
SYNE1-211ENST00000413186 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.12□□□□□ -0.79
SYNE1-211ENST00000413186 TPRNQ4KMQ1 711 aa10.12□□□□□ -0.79
SYNE1-211ENST00000413186 BLOC1S2Q6QNY1 142 aa10.12□□□□□ -0.79
SYNE1-211ENST00000413186 IL27Q8NEV9 243 aa10.12□□□□□ -0.79
SYNE1-211ENST00000413186 FBXO41Q8TF61 875 aa10.12□□□□□ -0.79
SYNE1-211ENST00000413186 RRP12Q5JTH9 1297 aaKnown RBP10.12□□□□□ -0.79
SYNE1-211ENST00000413186 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-211ENST00000413186 USP5P45974 858 aa10.12□□□□□ -0.79
SYNE1-211ENST00000413186 CTSWP56202 376 aa10.12□□□□□ -0.79
SYNE1-211ENST00000413186 ZSCAN29Q8IWY8 852 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-211ENST00000413186 NAPBQ9H115 298 aa10.12□□□□□ -0.79
SYNE1-211ENST00000413186 MROH5Q6ZUA9 1318 aa10.11□□□□□ -0.79
SYNE1-211ENST00000413186 TFCP2Q12800 502 aa10.11□□□□□ -0.79
SYNE1-211ENST00000413186 PUM3Q15397 648 aaKnown RBP10.11□□□□□ -0.79
SYNE1-211ENST00000413186 SNRKQ9NRH2 765 aa10.11□□□□□ -0.79
SYNE1-211ENST00000413186 PRAMEF22A3QJZ6 481 aa10.11□□□□□ -0.79
SYNE1-211ENST00000413186 GOLGA6L3A6NEY3 463 aa10.11□□□□□ -0.79
SYNE1-211ENST00000413186 XBP1P17861 261 aa10.11□□□□□ -0.79
SYNE1-211ENST00000413186 NUCB2P80303 420 aa10.11□□□□□ -0.79
SYNE1-211ENST00000413186 SSH3Q8TE77 659 aa10.11□□□□□ -0.79
SYNE1-211ENST00000413186 FOXD4L1Q9NU39 408 aa10.11□□□□□ -0.79
SYNE1-211ENST00000413186 COL5A2P05997 1499 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-211ENST00000413186 SAFBQ15424 915 aaKnown RBP eCLIP10.11□□□□□ -0.79
SYNE1-211ENST00000413186 RPS8P62241 208 aaKnown RBP10.11□□□□□ -0.79
SYNE1-211ENST00000413186 SETQ01105 290 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-211ENST00000413186 CEMIPQ8WUJ3 1361 aa10.11□□□□□ -0.79
SYNE1-211ENST00000413186 NWD1Q149M9 1564 aa10.1□□□□□ -0.79
SYNE1-211ENST00000413186 FNBP4Q8N3X1 1017 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-211ENST00000413186 SUPT20HQ8NEM7 779 aa10.1□□□□□ -0.79
SYNE1-211ENST00000413186 RNF41Q9H4P4 317 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-211ENST00000413186 CYP19A1P11511 503 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-211ENST00000413186 SF3A1Q15459 793 aaKnown RBP10.1□□□□□ -0.79
SYNE1-211ENST00000413186 JDP2Q8WYK2 163 aa10.1□□□□□ -0.79
SYNE1-211ENST00000413186 NARFQ9UHQ1 456 aa10.1□□□□□ -0.79
SYNE1-211ENST00000413186 HDAC9Q9UKV0 1011 aa10.1□□□□□ -0.79
SYNE1-211ENST00000413186 MARCH6O60337 910 aa10.1□□□□□ -0.79
SYNE1-211ENST00000413186 PDCP20941 246 aa10.1□□□□□ -0.79
SYNE1-211ENST00000413186 RC3H1Q5TC82 1133 aaKnown RBP10.1□□□□□ -0.79
SYNE1-211ENST00000413186 UBAC1Q9BSL1 405 aa10.1□□□□□ -0.79
SYNE1-211ENST00000413186 AOX1Q06278 1338 aa10.09□□□□□ -0.79
SYNE1-211ENST00000413186 MYOM1P52179 1685 aa10.09□□□□□ -0.79
SYNE1-211ENST00000413186 POLR3DP05423 398 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-211ENST00000413186 TMC4Q7Z404 712 aa10.09□□□□□ -0.79
SYNE1-211ENST00000413186 GOLGA6L1Q8N7Z2 621 aa10.09□□□□□ -0.79
SYNE1-211ENST00000413186 HELBQ8NG08 1087 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-211ENST00000413186 LPIN2Q92539 896 aa10.09□□□□□ -0.79
SYNE1-211ENST00000413186 GGA1Q9UJY5 639 aa10.09□□□□□ -0.79
SYNE1-211ENST00000413186 DENND2AQ9ULE3 1009 aa10.09□□□□□ -0.79
SYNE1-211ENST00000413186 KCNQ2O43526 872 aa10.09□□□□□ -0.79
SYNE1-211ENST00000413186 HMGB1P09429 215 aaKnown RBP10.09□□□□□ -0.79
SYNE1-211ENST00000413186 GSE1Q14687 1217 aa10.09□□□□□ -0.79
SYNE1-211ENST00000413186 NRDCO43847 1150 aa10.09□□□□□ -0.79
SYNE1-211ENST00000413186 TXNRD1Q16881 649 aa10.09□□□□□ -0.79
SYNE1-211ENST00000413186 TNNI3KQ59H18 835 aa10.09□□□□□ -0.79
SYNE1-211ENST00000413186 NLRP10Q86W26 655 aa10.09□□□□□ -0.79
SYNE1-211ENST00000413186 CNKSR1Q969H4 720 aa10.09□□□□□ -0.79
SYNE1-211ENST00000413186 FPGT-TNNI3KV9GXZ4 949 aa10.09□□□□□ -0.79
SYNE1-211ENST00000413186 COL3A1P02461 1466 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-211ENST00000413186 A0A1B0GUL7 405 aa10.08□□□□□ -0.8
SYNE1-211ENST00000413186 OGFOD1Q8N543 542 aa10.08□□□□□ -0.8
SYNE1-211ENST00000413186 ZSCAN31Q96LW9 406 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-211ENST00000413186 PAG1Q9NWQ8 432 aa10.08□□□□□ -0.8
SYNE1-211ENST00000413186 PNMA6EA0A0J9YXQ4 647 aa10.08□□□□□ -0.8
SYNE1-211ENST00000413186 CRNKL1Q9BZJ0 848 aaKnown RBP10.08□□□□□ -0.8
SYNE1-211ENST00000413186 SDSP20132 328 aa10.08□□□□□ -0.8
SYNE1-211ENST00000413186 MCTP1Q6DN14 999 aa10.08□□□□□ -0.8
SYNE1-211ENST00000413186 BRMS1Q9HCU9 246 aa10.08□□□□□ -0.8
SYNE1-211ENST00000413186 COPRSQ9NQ92 184 aa10.08□□□□□ -0.8
SYNE1-211ENST00000413186 PLCG2P16885 1265 aa10.08□□□□□ -0.8
SYNE1-211ENST00000413186 NAA16Q6N069 864 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-211ENST00000413186 JAKMIP1Q96N16 626 aaKnown RBP10.08□□□□□ -0.8
SYNE1-211ENST00000413186 CCDC69A6NI79 296 aa10.07□□□□□ -0.8
SYNE1-211ENST00000413186 ZNF213O14771 459 aa10.07□□□□□ -0.8
SYNE1-211ENST00000413186 MYO1BO43795 1136 aa10.07□□□□□ -0.8
SYNE1-211ENST00000413186 UFL1O94874 794 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms