RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 ZBTB1Q9Y2K1 713 aa24.22■■□□□ 1.47
USP39-204ENST00000409766 ANKRD36CQ5JPF3 1778 aa24.21■■□□□ 1.47
USP39-204ENST00000409766 DDB1Q16531 1140 aa24.21■■□□□ 1.47
USP39-204ENST00000409766 ADCK5Q3MIX3 580 aa24.21■■□□□ 1.47
USP39-204ENST00000409766 ARXQ96QS3 562 aa24.21■■□□□ 1.47
USP39-204ENST00000409766 NDUFB9Q9Y6M9 179 aa24.21■■□□□ 1.47
USP39-204ENST00000409766 TIMM10P62072 90 aa24.2■■□□□ 1.47
USP39-204ENST00000409766 CREB3L3Q68CJ9 461 aa24.2■■□□□ 1.47
USP39-204ENST00000409766 NEUROD6Q96NK8 337 aa24.2■■□□□ 1.47
USP39-204ENST00000409766 ZSWIM6Q9HCJ5 1215 aa24.2■■□□□ 1.47
USP39-204ENST00000409766 ZNF609O15014 1411 aa24.2■■□□□ 1.46
USP39-204ENST00000409766 CSF1RP07333 972 aa24.2■■□□□ 1.46
USP39-204ENST00000409766 ZKSCAN1P17029 563 aaPredicted RBP24.2■■□□□ 1.46
USP39-204ENST00000409766 CCDC57Q2TAC2 916 aa24.2■■□□□ 1.46
USP39-204ENST00000409766 ZNF589Q86UQ0 364 aaPredicted RBP24.2■■□□□ 1.46
USP39-204ENST00000409766 DNAJC2Q99543 621 aaKnown RBP24.2■■□□□ 1.46
USP39-204ENST00000409766 PUS3Q9BZE2 481 aaKnown RBP24.2■■□□□ 1.46
USP39-204ENST00000409766 HSP90AB3PQ58FF7 597 aa24.19■■□□□ 1.46
USP39-204ENST00000409766 RUFY3Q7L099 469 aa24.19■■□□□ 1.46
USP39-204ENST00000409766 NLRP10Q86W26 655 aa24.19■■□□□ 1.46
USP39-204ENST00000409766 JAKMIP1Q96N16 626 aaKnown RBP24.19■■□□□ 1.46
USP39-204ENST00000409766 FBXO3Q9UK99 471 aa24.19■■□□□ 1.46
USP39-204ENST00000409766 LIMCH1Q9UPQ0 1083 aa24.19■■□□□ 1.46
USP39-204ENST00000409766 NUP98P52948 1817 aa24.19■■□□□ 1.46
USP39-204ENST00000409766 CDHR2Q9BYE9 1310 aa24.19■■□□□ 1.46
USP39-204ENST00000409766 NUTM2BA6NNL0 878 aaPredicted RBP24.18■■□□□ 1.46
USP39-204ENST00000409766 NUTM2EB1AL46 878 aaPredicted RBP24.18■■□□□ 1.46
USP39-204ENST00000409766 NUTM2AQ8IVF1 878 aaPredicted RBP24.18■■□□□ 1.46
USP39-204ENST00000409766 CPA1P15085 419 aa24.18■■□□□ 1.46
USP39-204ENST00000409766 KCNJ4P48050 445 aa24.18■■□□□ 1.46
USP39-204ENST00000409766 VPS53Q5VIR6 699 aa24.18■■□□□ 1.46
USP39-204ENST00000409766 NWD2Q9ULI1 1742 aa24.18■■□□□ 1.46
USP39-204ENST00000409766 SPATA31A5Q5VU36 1347 aa24.17■■□□□ 1.46
USP39-204ENST00000409766 SPATA31A7Q8IWB4 1347 aa24.17■■□□□ 1.46
USP39-204ENST00000409766 FSD2A1L4K1 749 aa24.17■■□□□ 1.46
USP39-204ENST00000409766 SLC27A2O14975 620 aa24.17■■□□□ 1.46
USP39-204ENST00000409766 BRD1O95696 1058 aa24.17■■□□□ 1.46
USP39-204ENST00000409766 IL6STP40189 918 aaPredicted RBP24.17■■□□□ 1.46
USP39-204ENST00000409766 MCTP1Q6DN14 999 aa24.17■■□□□ 1.46
USP39-204ENST00000409766 TAF5LO75529 589 aa24.17■■□□□ 1.46
USP39-204ENST00000409766 GPTP24298 496 aa24.17■■□□□ 1.46
USP39-204ENST00000409766 KBTBD3Q8NAB2 608 aa24.17■■□□□ 1.46
USP39-204ENST00000409766 CYP46A1Q9Y6A2 500 aa24.17■■□□□ 1.46
USP39-204ENST00000409766 RPAP1Q9BWH6 1393 aaPredicted RBP24.16■■□□□ 1.46
USP39-204ENST00000409766 A0A1B0GUL7 405 aa24.16■■□□□ 1.46
USP39-204ENST00000409766 DDX46Q7L014 1031 aaKnown RBP24.16■■□□□ 1.46
USP39-204ENST00000409766 ERVV-1B6SEH8 477 aa24.15■■□□□ 1.46
USP39-204ENST00000409766 SYNE4Q8N205 404 aa24.15■■□□□ 1.46
USP39-204ENST00000409766 MARCH10Q8NA82 808 aaPredicted RBP24.15■■□□□ 1.46
USP39-204ENST00000409766 PDRG1Q9NUG6 133 aa24.15■■□□□ 1.46
USP39-204ENST00000409766 CEP126Q9P2H0 1117 aa24.15■■□□□ 1.46
USP39-204ENST00000409766 CCDC9Q9Y3X0 531 aaKnown RBP24.15■■□□□ 1.46
USP39-204ENST00000409766 PALLDQ8WX93 1383 aa24.15■■□□□ 1.46
USP39-204ENST00000409766 SLIT2O94813 1529 aa24.15■■□□□ 1.46
USP39-204ENST00000409766 L1TD1Q5T7N2 865 aaKnown RBP24.15■■□□□ 1.46
USP39-204ENST00000409766 RNF20Q5VTR2 975 aa24.15■■□□□ 1.46
USP39-204ENST00000409766 MYH3P11055 1940 aa24.14■■□□□ 1.46
USP39-204ENST00000409766 IFIT5Q13325 482 aaKnown RBP24.14■■□□□ 1.45
USP39-204ENST00000409766 USPL1Q5W0Q7 1092 aa24.14■■□□□ 1.45
USP39-204ENST00000409766 TICAM2Q86XR7 235 aa24.14■■□□□ 1.45
USP39-204ENST00000409766 PAG1Q9NWQ8 432 aa24.14■■□□□ 1.45
USP39-204ENST00000409766 GOLGA6L3A6NEY3 463 aa24.13■■□□□ 1.45
USP39-204ENST00000409766 CHGBP05060 677 aa24.13■■□□□ 1.45
USP39-204ENST00000409766 KLHL40Q2TBA0 621 aa24.13■■□□□ 1.45
USP39-204ENST00000409766 DZIP3Q86Y13 1208 aaKnown RBP24.13■■□□□ 1.45
USP39-204ENST00000409766 LMBRD1Q9NUN5 540 aa24.13■■□□□ 1.45
USP39-204ENST00000409766 TSGA10IPQ3SY00 556 aa24.13■■□□□ 1.45
USP39-204ENST00000409766 MCMDC2Q4G0Z9 681 aa24.13■■□□□ 1.45
USP39-204ENST00000409766 BARGINQ6ZT62 677 aa24.13■■□□□ 1.45
USP39-204ENST00000409766 CCDC85AQ96PX6 553 aaPredicted RBP24.13■■□□□ 1.45
USP39-204ENST00000409766 LARP6Q9BRS8 491 aaKnown RBP24.13■■□□□ 1.45
USP39-204ENST00000409766 SPEF2Q9C093 1822 aa24.12■■□□□ 1.45
USP39-204ENST00000409766 PSMA5P28066 241 aa24.12■■□□□ 1.45
USP39-204ENST00000409766 TTLL11Q8NHH1 800 aa24.12■■□□□ 1.45
USP39-204ENST00000409766 HMG20BQ9P0W2 317 aa24.12■■□□□ 1.45
USP39-204ENST00000409766 TBC1D2BQ9UPU7 963 aa24.12■■□□□ 1.45
USP39-204ENST00000409766 GOLIM4O00461 696 aa24.11■■□□□ 1.45
USP39-204ENST00000409766 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.11■■□□□ 1.45
USP39-204ENST00000409766 AKAP2Q9Y2D5 859 aa24.11■■□□□ 1.45
USP39-204ENST00000409766 SH3TC1Q8TE82 1336 aa24.11■■□□□ 1.45
USP39-204ENST00000409766 EIF5P55010 431 aaKnown RBP24.11■■□□□ 1.45
USP39-204ENST00000409766 INTS5Q6P9B9 1019 aaKnown RBP24.11■■□□□ 1.45
USP39-204ENST00000409766 ACSBG1Q96GR2 724 aa24.11■■□□□ 1.45
USP39-204ENST00000409766 SEC62Q99442 399 aaKnown RBP24.11■■□□□ 1.45
USP39-204ENST00000409766 DDX49Q9Y6V7 483 aaKnown RBP24.11■■□□□ 1.45
USP39-204ENST00000409766 LARGE1O95461 756 aa24.1■■□□□ 1.45
USP39-204ENST00000409766 IFIT1P09914 478 aaKnown RBP24.1■■□□□ 1.45
USP39-204ENST00000409766 TAF7LQ5H9L4 462 aa24.1■■□□□ 1.45
USP39-204ENST00000409766 TAF6LQ9Y6J9 622 aa24.1■■□□□ 1.45
USP39-204ENST00000409766 CTSWP56202 376 aa24.1■■□□□ 1.45
USP39-204ENST00000409766 FOXD4L5Q5VV16 416 aaPredicted RBP24.1■■□□□ 1.45
USP39-204ENST00000409766 AEBP2Q6ZN18 517 aaPredicted RBP24.1■■□□□ 1.45
USP39-204ENST00000409766 ZNF34Q8IZ26 560 aa24.1■■□□□ 1.45
USP39-204ENST00000409766 FOXD4L4Q8WXT5 416 aaPredicted RBP24.1■■□□□ 1.45
USP39-204ENST00000409766 ZSCAN31Q96LW9 406 aaPredicted RBP24.1■■□□□ 1.45
USP39-204ENST00000409766 TRMT112Q9UI30 125 aaKnown RBP24.1■■□□□ 1.45
USP39-204ENST00000409766 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.1■■□□□ 1.45
USP39-204ENST00000409766 IRS4O14654 1257 aaPredicted RBP24.09■■□□□ 1.45
USP39-204ENST00000409766 CCDC129Q6ZRS4 1044 aa24.09■■□□□ 1.45
USP39-204ENST00000409766 GREM2Q9H772 168 aa24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms