RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 PRKAR2BP31323 418 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 ATRIPQ8WXE1 791 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 C1orf115Q9H7X2 142 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 PFDN4Q9NQP4 134 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 NOC2LQ9Y3T9 749 aaKnown RBP8.94□□□□□ -0.98
SYNE1-210ENST00000409694 METTL24Q5JXM2 366 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 BACH2Q9BYV9 841 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 FAM169AQ9Y6X4 670 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 UBE2HP62256 183 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 BICDL2A1A5D9 508 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 NEDD9Q14511 834 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 SPTY2D1Q68D10 685 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-210ENST00000409694 MICALL1Q8N3F8 863 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 TCP11L2Q8N4U5 519 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 TRIM47Q96LD4 638 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.94□□□□□ -0.98
SYNE1-210ENST00000409694 EHBP1L1Q8N3D4 1523 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 GNG11P61952 73 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 SELENOSQ9BQE4 189 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 NKIRAS1Q9NYS0 192 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 ZPR1O75312 459 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 PRR16Q569H4 304 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 SAMM50Q9Y512 469 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 MAP3K21Q5TCX8 1036 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 CCDC62Q6P9F0 684 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 FSIP1Q8NA03 581 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 MYO1BO43795 1136 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 AKR1B10O60218 316 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 HLA-DOAP06340 250 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 MX1P20591 662 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 TAOK1Q7L7X3 1001 aa8.94□□□□□ -0.98
SYNE1-210ENST00000409694 FAM135AQ9P2D6 1515 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 ZNF213O14771 459 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 STK10O94804 968 aaKnown RBP8.93□□□□□ -0.98
SYNE1-210ENST00000409694 GSTO1P78417 241 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 ADCY5O95622 1261 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 CCDC102BQ68D86 513 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 FAM76AQ8TAV0 307 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 ANKRD24Q8TF21 1146 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 GIGYF1O75420 1035 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-210ENST00000409694 LIG1P18858 919 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 CUL4BQ13620 913 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 LIMCH1Q9UPQ0 1083 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 GIPC1O14908 333 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 CETN3O15182 167 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 MYL6BP14649 208 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 UBA7P41226 1012 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 TNNC1P63316 161 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 CAPN2P17655 700 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 NAA25Q14CX7 972 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 PHACTR2O75167 634 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 BAG3O95817 575 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-210ENST00000409694 HFM1A2PYH4 1435 aa8.93□□□□□ -0.98
SYNE1-210ENST00000409694 NKTRP30414 1462 aaKnown RBP8.93□□□□□ -0.98
SYNE1-210ENST00000409694 STAT6P42226 847 aa8.92□□□□□ -0.98
SYNE1-210ENST00000409694 CCDC89Q8N998 374 aa8.92□□□□□ -0.98
SYNE1-210ENST00000409694 RFC1P35251 1148 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-210ENST00000409694 PPP1R7Q15435 360 aa8.92□□□□□ -0.98
SYNE1-210ENST00000409694 A0A1B0GUL7 405 aa8.92□□□□□ -0.98
SYNE1-210ENST00000409694 GEN1Q17RS7 908 aa8.92□□□□□ -0.98
SYNE1-210ENST00000409694 WDR78Q5VTH9 848 aa8.92□□□□□ -0.98
SYNE1-210ENST00000409694 SEPT14Q6ZU15 432 aa8.92□□□□□ -0.98
SYNE1-210ENST00000409694 TSPYL2Q9H2G4 693 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-210ENST00000409694 ATP2C2O75185 946 aa8.92□□□□□ -0.98
SYNE1-210ENST00000409694 INF2Q27J81 1249 aa8.92□□□□□ -0.98
SYNE1-210ENST00000409694 SEL1L2Q5TEA6 688 aa8.92□□□□□ -0.98
SYNE1-210ENST00000409694 RILPL1Q5EBL4 403 aa8.92□□□□□ -0.98
SYNE1-210ENST00000409694 TOM1L2Q6ZVM7 507 aa8.92□□□□□ -0.98
SYNE1-210ENST00000409694 HDXQ7Z353 690 aa8.92□□□□□ -0.98
SYNE1-210ENST00000409694 TRIM35Q9UPQ4 493 aa8.92□□□□□ -0.98
SYNE1-210ENST00000409694 DNAJC8O75937 253 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-210ENST00000409694 TTLL12Q14166 644 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-210ENST00000409694 MINDY4BA8MYZ0 360 aa8.92□□□□□ -0.98
SYNE1-210ENST00000409694 BUB1BO60566 1050 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-210ENST00000409694 CHMP4BP1P59074 171 aa8.92□□□□□ -0.98
SYNE1-210ENST00000409694 EXOSC9Q06265 439 aaKnown RBP8.92□□□□□ -0.98
SYNE1-210ENST00000409694 TRMT1Q9NXH9 659 aaKnown RBP8.92□□□□□ -0.98
SYNE1-210ENST00000409694 N4BP3O15049 544 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 TUBB2AQ13885 445 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 ZNF530Q6P9A1 599 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-210ENST00000409694 CCDC26Q8TAB7 109 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 TUBB2BQ9BVA1 445 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 KAT14Q9H8E8 782 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 PTPRGP23470 1445 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 KCNG4Q8TDN1 519 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 PCK1P35558 622 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 PPFIA1Q13136 1202 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 CALCOCO2Q13137 446 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 RPGRQ92834 1020 aaKnown RBP8.91□□□□□ -0.98
SYNE1-210ENST00000409694 ZMYND15Q9H091 742 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 ABCF2Q9UG63 623 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 NBPF7P0C2Y1 421 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-210ENST00000409694 FGD6Q6ZV73 1430 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 ESCO1Q5FWF5 840 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 FCHSD2O94868 740 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 UBASH3AP57075 661 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 RANBP6O60518 1105 aaKnown RBP8.91□□□□□ -0.98
SYNE1-210ENST00000409694 CA8P35219 290 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 RASSF2P50749 326 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms