RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 SYNE4Q8N205 404 aa24.98■■□□□ 1.59
USP39-203ENST00000409470 CWC22Q9HCG8 908 aaKnown RBP24.98■■□□□ 1.59
USP39-203ENST00000409470 CSF1RP07333 972 aa24.97■■□□□ 1.59
USP39-203ENST00000409470 CRKLP46109 303 aaKnown RBP24.97■■□□□ 1.59
USP39-203ENST00000409470 TIMM10P62072 90 aa24.97■■□□□ 1.59
USP39-203ENST00000409470 VPS72Q15906 364 aa24.97■■□□□ 1.59
USP39-203ENST00000409470 INTS5Q6P9B9 1019 aaKnown RBP24.97■■□□□ 1.59
USP39-203ENST00000409470 IL27Q8NEV9 243 aa24.97■■□□□ 1.59
USP39-203ENST00000409470 TMX3Q96JJ7 454 aa24.97■■□□□ 1.59
USP39-203ENST00000409470 HAUS7Q99871 368 aa24.97■■□□□ 1.59
USP39-203ENST00000409470 CEP126Q9P2H0 1117 aa24.97■■□□□ 1.59
USP39-203ENST00000409470 TRMT112Q9UI30 125 aaKnown RBP24.97■■□□□ 1.59
USP39-203ENST00000409470 ANKRD36CQ5JPF3 1778 aa24.97■■□□□ 1.59
USP39-203ENST00000409470 CCDC171Q6TFL3 1326 aa24.97■■□□□ 1.59
USP39-203ENST00000409470 PALLDQ8WX93 1383 aa24.96■■□□□ 1.59
USP39-203ENST00000409470 EIF5P55010 431 aaKnown RBP24.96■■□□□ 1.59
USP39-203ENST00000409470 A0A0D9SFI3 127 aa24.96■■□□□ 1.59
USP39-203ENST00000409470 NOL8Q76FK4 1167 aaKnown RBP24.96■■□□□ 1.59
USP39-203ENST00000409470 RASEFQ8IZ41 740 aa24.96■■□□□ 1.59
USP39-203ENST00000409470 SMARCC1Q92922 1105 aaPredicted RBP24.96■■□□□ 1.59
USP39-203ENST00000409470 GBP4Q96PP9 640 aa24.96■■□□□ 1.59
USP39-203ENST00000409470 FBXO3Q9UK99 471 aa24.96■■□□□ 1.59
USP39-203ENST00000409470 NDUFB9Q9Y6M9 179 aa24.96■■□□□ 1.59
USP39-203ENST00000409470 NUP98P52948 1817 aa24.95■■□□□ 1.59
USP39-203ENST00000409470 IRS4O14654 1257 aaPredicted RBP24.95■■□□□ 1.58
USP39-203ENST00000409470 KCNQ2O43526 872 aa24.95■■□□□ 1.58
USP39-203ENST00000409470 KCNJ4P48050 445 aa24.95■■□□□ 1.58
USP39-203ENST00000409470 ZNF609O15014 1411 aa24.95■■□□□ 1.58
USP39-203ENST00000409470 BCL9LQ86UU0 1499 aa24.94■■□□□ 1.58
USP39-203ENST00000409470 A0A1B0GUL7 405 aa24.94■■□□□ 1.58
USP39-203ENST00000409470 DDX11L8A8MPP1 907 aa24.94■■□□□ 1.58
USP39-203ENST00000409470 ITPK1Q13572 414 aa24.94■■□□□ 1.58
USP39-203ENST00000409470 PRPF40BQ6NWY9 871 aaKnown RBP24.94■■□□□ 1.58
USP39-203ENST00000409470 ZGPATQ8N5A5 531 aaKnown RBP24.94■■□□□ 1.58
USP39-203ENST00000409470 SNRKQ9NRH2 765 aa24.94■■□□□ 1.58
USP39-203ENST00000409470 SSFA2P28290 1259 aa24.93■■□□□ 1.58
USP39-203ENST00000409470 CTSWP56202 376 aa24.93■■□□□ 1.58
USP39-203ENST00000409470 NUCB2P80303 420 aa24.93■■□□□ 1.58
USP39-203ENST00000409470 ZNF34Q8IZ26 560 aa24.93■■□□□ 1.58
USP39-203ENST00000409470 DDX46Q7L014 1031 aaKnown RBP24.92■■□□□ 1.58
USP39-203ENST00000409470 TTLL11Q8NHH1 800 aa24.92■■□□□ 1.58
USP39-203ENST00000409470 AKAP2Q9Y2D5 859 aa24.92■■□□□ 1.58
USP39-203ENST00000409470 RBM8AQ9Y5S9 174 aaKnown RBP24.92■■□□□ 1.58
USP39-203ENST00000409470 RFX7Q2KHR2 1363 aa24.92■■□□□ 1.58
USP39-203ENST00000409470 UBN2Q6ZU65 1347 aa24.91■■□□□ 1.58
USP39-203ENST00000409470 ITGA6P23229 1130 aa24.91■■□□□ 1.58
USP39-203ENST00000409470 MAP4K1Q92918 833 aa24.91■■□□□ 1.58
USP39-203ENST00000409470 GREM2Q9H772 168 aa24.91■■□□□ 1.58
USP39-203ENST00000409470 MED23Q9ULK4 1368 aa24.91■■□□□ 1.58
USP39-203ENST00000409470 ANKRD18BA2A2Z9 1011 aa24.9■■□□□ 1.58
USP39-203ENST00000409470 ZKSCAN1P17029 563 aaPredicted RBP24.9■■□□□ 1.58
USP39-203ENST00000409470 NECTIN1Q15223 517 aa24.9■■□□□ 1.58
USP39-203ENST00000409470 FNBP4Q8N3X1 1017 aaPredicted RBP24.9■■□□□ 1.58
USP39-203ENST00000409470 PDE8AO60658 829 aa24.9■■□□□ 1.58
USP39-203ENST00000409470 CASTP20810 708 aaKnown RBP24.9■■□□□ 1.58
USP39-203ENST00000409470 CUL4AQ13619 759 aa24.9■■□□□ 1.58
USP39-203ENST00000409470 PAG1Q9NWQ8 432 aa24.9■■□□□ 1.58
USP39-203ENST00000409470 GORABQ5T7V8 394 aa24.89■■□□□ 1.57
USP39-203ENST00000409470 KBTBD3Q8NAB2 608 aa24.89■■□□□ 1.57
USP39-203ENST00000409470 KCNB2Q92953 911 aa24.89■■□□□ 1.57
USP39-203ENST00000409470 GOLIM4O00461 696 aa24.88■■□□□ 1.57
USP39-203ENST00000409470 IFIT1P09914 478 aaKnown RBP24.88■■□□□ 1.57
USP39-203ENST00000409470 CREB3L3Q68CJ9 461 aa24.88■■□□□ 1.57
USP39-203ENST00000409470 ZNF589Q86UQ0 364 aaPredicted RBP24.88■■□□□ 1.57
USP39-203ENST00000409470 JAKMIP1Q96N16 626 aaKnown RBP24.88■■□□□ 1.57
USP39-203ENST00000409470 USP21Q9UK80 565 aa24.88■■□□□ 1.57
USP39-203ENST00000409470 LDHAL6AQ6ZMR3 332 aa24.88■■□□□ 1.57
USP39-203ENST00000409470 MYH3P11055 1940 aa24.87■■□□□ 1.57
USP39-203ENST00000409470 SPATA31A6Q5VVP1 1343 aa24.87■■□□□ 1.57
USP39-203ENST00000409470 CCDC158Q5M9N0 1113 aa24.87■■□□□ 1.57
USP39-203ENST00000409470 TTC14Q96N46 770 aa24.87■■□□□ 1.57
USP39-203ENST00000409470 RREB1Q92766 1687 aa24.86■■□□□ 1.57
USP39-203ENST00000409470 METTL24Q5JXM2 366 aa24.86■■□□□ 1.57
USP39-203ENST00000409470 RNF20Q5VTR2 975 aa24.86■■□□□ 1.57
USP39-203ENST00000409470 INTS4Q96HW7 963 aaKnown RBP24.86■■□□□ 1.57
USP39-203ENST00000409470 CNNM1Q9NRU3 951 aa24.86■■□□□ 1.57
USP39-203ENST00000409470 CICQ96RK0 1608 aaPredicted RBP24.86■■□□□ 1.57
USP39-203ENST00000409470 CAMTA2O94983 1202 aa24.86■■□□□ 1.57
USP39-203ENST00000409470 SUSD4Q5VX71 490 aa24.86■■□□□ 1.57
USP39-203ENST00000409470 XAGE2Q96GT9 111 aa24.86■■□□□ 1.57
USP39-203ENST00000409470 TM6SF1Q9BZW5 370 aa24.86■■□□□ 1.57
USP39-203ENST00000409470 FAM177BA6PVY3 158 aa24.85■■□□□ 1.57
USP39-203ENST00000409470 SLC27A2O14975 620 aa24.85■■□□□ 1.57
USP39-203ENST00000409470 TRAK2O60296 914 aa24.85■■□□□ 1.57
USP39-203ENST00000409470 AK2P54819 239 aa24.85■■□□□ 1.57
USP39-203ENST00000409470 ADCK5Q3MIX3 580 aa24.85■■□□□ 1.57
USP39-203ENST00000409470 TTC39AQ5SRH9 613 aa24.85■■□□□ 1.57
USP39-203ENST00000409470 RIPOR2Q9Y4F9 1068 aa24.85■■□□□ 1.57
USP39-203ENST00000409470 MYH14Q7Z406 1995 aaKnown RBP24.85■■□□□ 1.57
USP39-203ENST00000409470 SH3TC1Q8TE82 1336 aa24.85■■□□□ 1.57
USP39-203ENST00000409470 TAF5LO75529 589 aa24.85■■□□□ 1.57
USP39-203ENST00000409470 CPA1P15085 419 aa24.85■■□□□ 1.57
USP39-203ENST00000409470 PKP1Q13835 747 aa24.85■■□□□ 1.57
USP39-203ENST00000409470 MCMDC2Q4G0Z9 681 aa24.85■■□□□ 1.57
USP39-203ENST00000409470 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.85■■□□□ 1.57
USP39-203ENST00000409470 UTP14AQ9BVJ6 771 aaKnown RBP24.85■■□□□ 1.57
USP39-203ENST00000409470 CYP46A1Q9Y6A2 500 aa24.85■■□□□ 1.57
USP39-203ENST00000409470 CYP2E1P05181 493 aaPredicted RBP24.84■■□□□ 1.57
USP39-203ENST00000409470 ADORA1P30542 326 aa24.84■■□□□ 1.57
USP39-203ENST00000409470 AK7Q96M32 723 aa24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms