RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 EPHA10Q5JZY3 1008 aa16.71■□□□□ 0.27
LIMS1-204ENST00000409441 PLA2G12BQ9BX93 195 aa16.71■□□□□ 0.27
LIMS1-204ENST00000409441 PCDHB15Q9Y5E8 787 aa16.71■□□□□ 0.27
LIMS1-204ENST00000409441 LRRFIP2Q9Y608 721 aaKnown RBP16.71■□□□□ 0.27
LIMS1-204ENST00000409441 ABCC12Q96J65 1359 aa16.71■□□□□ 0.27
LIMS1-204ENST00000409441 COL24A1Q17RW2 1714 aa16.71■□□□□ 0.27
LIMS1-204ENST00000409441 FOXO4P98177 505 aa16.7■□□□□ 0.26
LIMS1-204ENST00000409441 SKAP1Q86WV1 359 aa16.7■□□□□ 0.26
LIMS1-204ENST00000409441 NOP58Q9Y2X3 529 aaKnown RBP16.7■□□□□ 0.26
LIMS1-204ENST00000409441 PDE6BP35913 854 aa16.7■□□□□ 0.26
LIMS1-204ENST00000409441 C3orf67Q6ZVT6 689 aa16.7■□□□□ 0.26
LIMS1-204ENST00000409441 C1orf115Q9H7X2 142 aa16.7■□□□□ 0.26
LIMS1-204ENST00000409441 TTLL11Q8NHH1 800 aa16.69■□□□□ 0.26
LIMS1-204ENST00000409441 BICC1Q9H694 974 aaKnown RBP16.69■□□□□ 0.26
LIMS1-204ENST00000409441 KLRG2A4D1S0 409 aaPredicted RBP16.68■□□□□ 0.26
LIMS1-204ENST00000409441 CSF1RP07333 972 aa16.68■□□□□ 0.26
LIMS1-204ENST00000409441 CTSWP56202 376 aa16.68■□□□□ 0.26
LIMS1-204ENST00000409441 SF3B3Q15393 1217 aaKnown RBP16.68■□□□□ 0.26
LIMS1-204ENST00000409441 LMBR1LQ6UX01 489 aa16.68■□□□□ 0.26
LIMS1-204ENST00000409441 PPP1R1BQ9UD71 204 aaPredicted RBP16.68■□□□□ 0.26
LIMS1-204ENST00000409441 N4BP2Q86UW6 1770 aaPredicted RBP16.68■□□□□ 0.26
LIMS1-204ENST00000409441 RGS3P49796 1198 aa16.67■□□□□ 0.26
LIMS1-204ENST00000409441 HDAC1Q13547 482 aaPredicted RBP16.67■□□□□ 0.26
LIMS1-204ENST00000409441 ANKRD44Q8N8A2 993 aa16.67■□□□□ 0.26
LIMS1-204ENST00000409441 CCDC85AQ96PX6 553 aaPredicted RBP16.67■□□□□ 0.26
LIMS1-204ENST00000409441 NRXN2Q9P2S2 1712 aa16.67■□□□□ 0.26
LIMS1-204ENST00000409441 RABL6Q3YEC7 729 aaPredicted RBP16.67■□□□□ 0.26
LIMS1-204ENST00000409441 C8orf34Q49A92 452 aa16.67■□□□□ 0.26
LIMS1-204ENST00000409441 KLHL34Q8N239 644 aa16.67■□□□□ 0.26
LIMS1-204ENST00000409441 CD2APQ9Y5K6 639 aa16.67■□□□□ 0.26
LIMS1-204ENST00000409441 H0YIN7 160 aa16.66■□□□□ 0.26
LIMS1-204ENST00000409441 CRY2Q49AN0 593 aa16.66■□□□□ 0.26
LIMS1-204ENST00000409441 CCDC152Q4G0S7 254 aa16.66■□□□□ 0.26
LIMS1-204ENST00000409441 C2CD5Q86YS7 1000 aa16.66■□□□□ 0.26
LIMS1-204ENST00000409441 CHMP3Q9Y3E7 222 aa16.66■□□□□ 0.26
LIMS1-204ENST00000409441 RIC1Q4ADV7 1423 aa16.65■□□□□ 0.26
LIMS1-204ENST00000409441 SRGNP10124 158 aa16.65■□□□□ 0.26
LIMS1-204ENST00000409441 GREM2Q9H772 168 aa16.65■□□□□ 0.26
LIMS1-204ENST00000409441 ZBTB47Q9UFB7 747 aaPredicted RBP16.65■□□□□ 0.26
LIMS1-204ENST00000409441 C10orf71Q711Q0 1435 aa16.65■□□□□ 0.26
LIMS1-204ENST00000409441 CHRNA5P30532 468 aa16.64■□□□□ 0.25
LIMS1-204ENST00000409441 TGFB2P61812 414 aa16.64■□□□□ 0.25
LIMS1-204ENST00000409441 ATP8B2P98198 1209 aa16.64■□□□□ 0.25
LIMS1-204ENST00000409441 RPGRQ92834 1020 aaKnown RBP16.64■□□□□ 0.25
LIMS1-204ENST00000409441 DDRGK1Q96HY6 314 aa16.64■□□□□ 0.25
LIMS1-204ENST00000409441 PDZRN3Q9UPQ7 1066 aa16.64■□□□□ 0.25
LIMS1-204ENST00000409441 A0A0G2JLW4 131 aa16.63■□□□□ 0.25
LIMS1-204ENST00000409441 HOXA10P31260 410 aaPredicted RBP16.63■□□□□ 0.25
LIMS1-204ENST00000409441 MTX1Q13505 466 aa16.63■□□□□ 0.25
LIMS1-204ENST00000409441 CEP85Q6P2H3 762 aa16.63■□□□□ 0.25
LIMS1-204ENST00000409441 RPAP2Q8IXW5 612 aaPredicted RBP16.63■□□□□ 0.25
LIMS1-204ENST00000409441 SRGAP3O43295 1099 aa16.63■□□□□ 0.25
LIMS1-204ENST00000409441 NPR1P16066 1061 aa16.63■□□□□ 0.25
LIMS1-204ENST00000409441 DPEP1P16444 411 aa16.63■□□□□ 0.25
LIMS1-204ENST00000409441 ITGA6P23229 1130 aa16.63■□□□□ 0.25
LIMS1-204ENST00000409441 IFIT5Q13325 482 aaKnown RBP16.63■□□□□ 0.25
LIMS1-204ENST00000409441 CCDC57Q2TAC2 916 aa16.63■□□□□ 0.25
LIMS1-204ENST00000409441 DDX46Q7L014 1031 aaKnown RBP16.63■□□□□ 0.25
LIMS1-204ENST00000409441 MASTLQ96GX5 879 aa16.63■□□□□ 0.25
LIMS1-204ENST00000409441 RBM17Q96I25 401 aaKnown RBP16.63■□□□□ 0.25
LIMS1-204ENST00000409441 FHDC1Q9C0D6 1143 aaPredicted RBP16.63■□□□□ 0.25
LIMS1-204ENST00000409441 SEC31BQ9NQW1 1179 aa16.63■□□□□ 0.25
LIMS1-204ENST00000409441 PNMA6EA0A0J9YXQ4 647 aa16.62■□□□□ 0.25
LIMS1-204ENST00000409441 SIRT2Q8IXJ6 389 aa16.62■□□□□ 0.25
LIMS1-204ENST00000409441 ZNF622Q969S3 477 aaKnown RBP eCLIP16.62■□□□□ 0.25
LIMS1-204ENST00000409441 DDX60Q8IY21 1712 aaKnown RBP16.62■□□□□ 0.25
LIMS1-204ENST00000409441 ANKRD18BA2A2Z9 1011 aa16.61■□□□□ 0.25
LIMS1-204ENST00000409441 KCNA3P22001 575 aa16.61■□□□□ 0.25
LIMS1-204ENST00000409441 CRAMP1Q96RY5 1269 aa16.61■□□□□ 0.25
LIMS1-204ENST00000409441 RTL9Q8NET4 1388 aa16.6■□□□□ 0.25
LIMS1-204ENST00000409441 ALDH1B1P30837 517 aa16.6■□□□□ 0.25
LIMS1-204ENST00000409441 STYK1Q6J9G0 422 aa16.6■□□□□ 0.25
LIMS1-204ENST00000409441 RFX5P48382 616 aaPredicted RBP16.59■□□□□ 0.25
LIMS1-204ENST00000409441 RPS8P62241 208 aaKnown RBP16.59■□□□□ 0.25
LIMS1-204ENST00000409441 POLA2Q14181 598 aa16.59■□□□□ 0.25
LIMS1-204ENST00000409441 SSH3Q8TE77 659 aa16.59■□□□□ 0.25
LIMS1-204ENST00000409441 CELF1Q92879 486 aaKnown RBP16.59■□□□□ 0.25
LIMS1-204ENST00000409441 SYT17Q9BSW7 474 aa16.59■□□□□ 0.25
LIMS1-204ENST00000409441 ANKRD31Q8N7Z5 1873 aa16.59■□□□□ 0.25
LIMS1-204ENST00000409441 TNRC6CQ9HCJ0 1690 aaKnown RBP16.59■□□□□ 0.25
LIMS1-204ENST00000409441 TAF7LQ5H9L4 462 aa16.59■□□□□ 0.25
LIMS1-204ENST00000409441 SMC5Q8IY18 1101 aa16.59■□□□□ 0.25
LIMS1-204ENST00000409441 NLGN2Q8NFZ4 835 aa16.59■□□□□ 0.25
LIMS1-204ENST00000409441 KLHDC4Q8TBB5 520 aa16.59■□□□□ 0.25
LIMS1-204ENST00000409441 CNKSR1Q969H4 720 aa16.59■□□□□ 0.25
LIMS1-204ENST00000409441 ZNF594Q96JF6 807 aaPredicted RBP16.59■□□□□ 0.25
LIMS1-204ENST00000409441 CDC5LQ99459 802 aaKnown RBP16.59■□□□□ 0.25
LIMS1-204ENST00000409441 HMMRO75330 724 aa16.58■□□□□ 0.24
LIMS1-204ENST00000409441 BBOX1O75936 387 aa16.58■□□□□ 0.24
LIMS1-204ENST00000409441 GRAPQ13588 217 aa16.58■□□□□ 0.24
LIMS1-204ENST00000409441 ANKRD18AQ8IVF6 992 aa16.58■□□□□ 0.24
LIMS1-204ENST00000409441 GRAPLQ8TC17 118 aaPredicted RBP16.58■□□□□ 0.24
LIMS1-204ENST00000409441 PIM2Q9P1W9 311 aa16.58■□□□□ 0.24
LIMS1-204ENST00000409441 IGHMBP2P38935 993 aaKnown RBP16.57■□□□□ 0.24
LIMS1-204ENST00000409441 PTPN12Q05209 780 aaKnown RBP16.57■□□□□ 0.24
LIMS1-204ENST00000409441 TTLL6Q8N841 843 aa16.57■□□□□ 0.24
LIMS1-204ENST00000409441 LAMB2P55268 1798 aa16.57■□□□□ 0.24
LIMS1-204ENST00000409441 LDHAL6AQ6ZMR3 332 aa16.56■□□□□ 0.24
LIMS1-204ENST00000409441 MPHOSPH8Q99549 860 aa16.56■□□□□ 0.24
LIMS1-204ENST00000409441 COPRSQ9NQ92 184 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms