RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 ZSWIM4Q9H7M6 989 aa15.22■□□□□ 0.03
USP49-203ENST00000394253 STX6O43752 255 aa15.22■□□□□ 0.03
USP49-203ENST00000394253 DBN1Q16643 649 aa15.22■□□□□ 0.03
USP49-203ENST00000394253 MYH9P35579 1960 aaKnown RBP15.22■□□□□ 0.03
USP49-203ENST00000394253 NUTM2FA1L443 756 aa15.22■□□□□ 0.03
USP49-203ENST00000394253 TMX1Q9H3N1 280 aa15.21■□□□□ 0.03
USP49-203ENST00000394253 AFAP1L1Q8TED9 768 aa15.21■□□□□ 0.03
USP49-203ENST00000394253 TRIM4Q9C037 500 aa15.21■□□□□ 0.03
USP49-203ENST00000394253 CUX1P39880 1505 aa15.21■□□□□ 0.03
USP49-203ENST00000394253 MSANTD4Q8NCY6 345 aa15.21■□□□□ 0.03
USP49-203ENST00000394253 EXOC1Q9NV70 894 aa15.21■□□□□ 0.03
USP49-203ENST00000394253 AIDAQ96BJ3 306 aa15.21■□□□□ 0.03
USP49-203ENST00000394253 GOLGA8AA7E2F4 631 aa15.21■□□□□ 0.02
USP49-203ENST00000394253 GOLGA8BA8MQT2 603 aa15.21■□□□□ 0.02
USP49-203ENST00000394253 SMARCC2Q8TAQ2 1214 aa15.21■□□□□ 0.02
USP49-203ENST00000394253 CCDC82Q8N4S0 544 aa15.2■□□□□ 0.02
USP49-203ENST00000394253 CSRNP2Q9H175 543 aa15.2■□□□□ 0.02
USP49-203ENST00000394253 RAB11FIP3O75154 756 aa15.2■□□□□ 0.02
USP49-203ENST00000394253 UBASH3AP57075 661 aa15.2■□□□□ 0.02
USP49-203ENST00000394253 INF2Q27J81 1249 aa15.2■□□□□ 0.02
USP49-203ENST00000394253 TAF7Q15545 349 aaPredicted RBP15.2■□□□□ 0.02
USP49-203ENST00000394253 KCNK9Q9NPC2 374 aa15.2■□□□□ 0.02
USP49-203ENST00000394253 CROCCP2Q86T23 111 aa15.2■□□□□ 0.02
USP49-203ENST00000394253 HSP90AA5PQ58FG0 334 aa15.2■□□□□ 0.02
USP49-203ENST00000394253 SRGAP1Q7Z6B7 1085 aa15.2■□□□□ 0.02
USP49-203ENST00000394253 AACSQ86V21 672 aa15.2■□□□□ 0.02
USP49-203ENST00000394253 TRHP20396 242 aaPredicted RBP15.2■□□□□ 0.02
USP49-203ENST00000394253 CXorf38Q8TB03 319 aa15.2■□□□□ 0.02
USP49-203ENST00000394253 HMGB2P26583 209 aaKnown RBP15.19■□□□□ 0.02
USP49-203ENST00000394253 CPLX3Q8WVH0 158 aa15.19■□□□□ 0.02
USP49-203ENST00000394253 PLEKHH2Q8IVE3 1493 aa15.19■□□□□ 0.02
USP49-203ENST00000394253 SMIM24O75264 130 aa15.19■□□□□ 0.02
USP49-203ENST00000394253 SYF2O95926 243 aaKnown RBP15.19■□□□□ 0.02
USP49-203ENST00000394253 SPATS2LQ9NUQ6 558 aaKnown RBP15.19■□□□□ 0.02
USP49-203ENST00000394253 LARSQ9P2J5 1176 aaKnown RBP15.19■□□□□ 0.02
USP49-203ENST00000394253 CCDC194A0A1B0GVG4 234 aa15.19■□□□□ 0.02
USP49-203ENST00000394253 PPP1R7Q15435 360 aa15.19■□□□□ 0.02
USP49-203ENST00000394253 MUM1Q2TAK8 710 aa15.19■□□□□ 0.02
USP49-203ENST00000394253 LRRC43Q8N309 656 aa15.19■□□□□ 0.02
USP49-203ENST00000394253 BANK1Q8NDB2 785 aa15.19■□□□□ 0.02
USP49-203ENST00000394253 I3L4J1 428 aa15.19■□□□□ 0.02
USP49-203ENST00000394253 TNNC1P63316 161 aa15.19■□□□□ 0.02
USP49-203ENST00000394253 KLHL34Q8N239 644 aa15.18■□□□□ 0.02
USP49-203ENST00000394253 CARMIL1Q5VZK9 1371 aa15.18■□□□□ 0.02
USP49-203ENST00000394253 CLCN1P35523 988 aa15.18■□□□□ 0.02
USP49-203ENST00000394253 CUL4BQ13620 913 aa15.18■□□□□ 0.02
USP49-203ENST00000394253 HS1BP3Q53T59 392 aa15.18■□□□□ 0.02
USP49-203ENST00000394253 ZNF354CQ86Y25 554 aa15.18■□□□□ 0.02
USP49-203ENST00000394253 NDUFAB1O14561 156 aa15.18■□□□□ 0.02
USP49-203ENST00000394253 N4BP3O15049 544 aa15.18■□□□□ 0.02
USP49-203ENST00000394253 HMGB3O15347 200 aaKnown RBP15.18■□□□□ 0.02
USP49-203ENST00000394253 IQCA1Q86XH1 822 aa15.18■□□□□ 0.02
USP49-203ENST00000394253 LRP2BPQ9P2M1 347 aa15.18■□□□□ 0.02
USP49-203ENST00000394253 FAM169AQ9Y6X4 670 aa15.18■□□□□ 0.02
USP49-203ENST00000394253 RLBP1P12271 317 aa15.18■□□□□ 0.02
USP49-203ENST00000394253 FSIP1Q8NA03 581 aa15.18■□□□□ 0.02
USP49-203ENST00000394253 MPHOSPH6Q99547 160 aaKnown RBP15.18■□□□□ 0.02
USP49-203ENST00000394253 CCDC26Q8TAB7 109 aa15.18■□□□□ 0.02
USP49-203ENST00000394253 TMCO4Q5TGY1 634 aa15.18■□□□□ 0.02
USP49-203ENST00000394253 CKAP2LQ8IYA6 745 aa15.18■□□□□ 0.02
USP49-203ENST00000394253 MYO18AQ92614 2054 aaKnown RBP15.18■□□□□ 0.02
USP49-203ENST00000394253 NLRP5P59047 1200 aa15.17■□□□□ 0.02
USP49-203ENST00000394253 ZSCAN29Q8IWY8 852 aaPredicted RBP15.17■□□□□ 0.02
USP49-203ENST00000394253 SSRP1Q08945 709 aaKnown RBP15.17■□□□□ 0.02
USP49-203ENST00000394253 DIXDC1Q155Q3 683 aa15.17■□□□□ 0.02
USP49-203ENST00000394253 MORC4Q8TE76 937 aa15.17■□□□□ 0.02
USP49-203ENST00000394253 MAK16Q9BXY0 300 aaKnown RBP15.17■□□□□ 0.02
USP49-203ENST00000394253 RAP1GDS1P52306 607 aa15.17■□□□□ 0.02
USP49-203ENST00000394253 SPAG1Q07617 926 aa15.17■□□□□ 0.02
USP49-203ENST00000394253 SLC12A7Q9Y666 1083 aa15.17■□□□□ 0.02
USP49-203ENST00000394253 CROCCQ5TZA2 2017 aa15.17■□□□□ 0.02
USP49-203ENST00000394253 FAF1Q9UNN5 650 aaPredicted RBP15.17■□□□□ 0.02
USP49-203ENST00000394253 RAB11FIP4Q86YS3 637 aa15.17■□□□□ 0.02
USP49-203ENST00000394253 UBLCP1Q8WVY7 318 aaPredicted RBP15.17■□□□□ 0.02
USP49-203ENST00000394253 PSPC1Q8WXF1 523 aaKnown RBP15.17■□□□□ 0.02
USP49-203ENST00000394253 TMOD2Q9NZR1 351 aa15.17■□□□□ 0.02
USP49-203ENST00000394253 SKILP12757 684 aa15.16■□□□□ 0.02
USP49-203ENST00000394253 SLC8A1P32418 973 aa15.16■□□□□ 0.02
USP49-203ENST00000394253 HNRNPMP52272 730 aaKnown RBP eCLIP15.16■□□□□ 0.02
USP49-203ENST00000394253 CATIPQ7Z7H3 387 aa15.16■□□□□ 0.02
USP49-203ENST00000394253 HAUS2Q9NVX0 235 aa15.16■□□□□ 0.02
USP49-203ENST00000394253 CUX2O14529 1486 aa15.16■□□□□ 0.02
USP49-203ENST00000394253 PALM3A6NDB9 673 aaPredicted RBP15.16■□□□□ 0.02
USP49-203ENST00000394253 MICAL1Q8TDZ2 1067 aa15.16■□□□□ 0.02
USP49-203ENST00000394253 TRIM47Q96LD4 638 aa15.16■□□□□ 0.02
USP49-203ENST00000394253 IMPG2Q9BZV3 1241 aa15.16■□□□□ 0.02
USP49-203ENST00000394253 HMOX1P09601 288 aa15.16■□□□□ 0.02
USP49-203ENST00000394253 ATP6V1AP38606 617 aa15.16■□□□□ 0.02
USP49-203ENST00000394253 RILPL1Q5EBL4 403 aa15.16■□□□□ 0.02
USP49-203ENST00000394253 NUMA1Q14980 2115 aa15.16■□□□□ 0.02
USP49-203ENST00000394253 ZNF131P52739 623 aa15.16■□□□□ 0.02
USP49-203ENST00000394253 UTP11Q9Y3A2 253 aaKnown RBP15.16■□□□□ 0.02
USP49-203ENST00000394253 PHLDB3Q6NSJ2 640 aa15.16■□□□□ 0.02
USP49-203ENST00000394253 PLCB1Q9NQ66 1216 aa15.16■□□□□ 0.02
USP49-203ENST00000394253 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.16■□□□□ 0.02
USP49-203ENST00000394253 ZSCAN16Q9H4T2 348 aaPredicted RBP15.15■□□□□ 0.02
USP49-203ENST00000394253 DNAI1Q9UI46 699 aa15.15■□□□□ 0.02
USP49-203ENST00000394253 ATP6V0A2Q9Y487 856 aa15.15■□□□□ 0.02
USP49-203ENST00000394253 ACTN4O43707 911 aaKnown RBP15.15■□□□□ 0.02
USP49-203ENST00000394253 CCDC102BQ68D86 513 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms