RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 SIPA1L3O60292 1781 aaPredicted RBP21■□□□□ 0.95
SQSTM1-202ENST00000389805 CAMTA1Q9Y6Y1 1673 aa21■□□□□ 0.95
SQSTM1-202ENST00000389805 ERC1Q8IUD2 1116 aa21■□□□□ 0.95
SQSTM1-202ENST00000389805 PRPF40BQ6NWY9 871 aaKnown RBP20.99■□□□□ 0.95
SQSTM1-202ENST00000389805 LRP10Q7Z4F1 713 aa20.99■□□□□ 0.95
SQSTM1-202ENST00000389805 METTL22Q9BUU2 404 aaPredicted RBP20.99■□□□□ 0.95
SQSTM1-202ENST00000389805 ALS2Q96Q42 1657 aa20.99■□□□□ 0.95
SQSTM1-202ENST00000389805 STX6O43752 255 aa20.99■□□□□ 0.95
SQSTM1-202ENST00000389805 DNM1Q05193 864 aaKnown RBP20.99■□□□□ 0.95
SQSTM1-202ENST00000389805 COL9A3Q14050 684 aaPredicted RBP20.99■□□□□ 0.95
SQSTM1-202ENST00000389805 FUCA2Q9BTY2 467 aa20.99■□□□□ 0.95
SQSTM1-202ENST00000389805 SNRPA1P09661 255 aaKnown RBP20.98■□□□□ 0.95
SQSTM1-202ENST00000389805 CASTP20810 708 aaKnown RBP20.98■□□□□ 0.95
SQSTM1-202ENST00000389805 CAMK4Q16566 473 aa20.98■□□□□ 0.95
SQSTM1-202ENST00000389805 RUFY3Q7L099 469 aa20.98■□□□□ 0.95
SQSTM1-202ENST00000389805 EDC3Q96F86 508 aaKnown RBP20.98■□□□□ 0.95
SQSTM1-202ENST00000389805 DCAF5Q96JK2 942 aa20.98■□□□□ 0.95
SQSTM1-202ENST00000389805 TTC14Q96N46 770 aa20.98■□□□□ 0.95
SQSTM1-202ENST00000389805 VGLL3A8MV65 326 aa20.98■□□□□ 0.95
SQSTM1-202ENST00000389805 DRC7Q8IY82 874 aa20.98■□□□□ 0.95
SQSTM1-202ENST00000389805 GPATCH3Q96I76 525 aa20.98■□□□□ 0.95
SQSTM1-202ENST00000389805 CABP4P57796 275 aa20.97■□□□□ 0.95
SQSTM1-202ENST00000389805 TMEM87AQ8NBN3 555 aa20.97■□□□□ 0.95
SQSTM1-202ENST00000389805 OGFRQ9NZT2 677 aa20.97■□□□□ 0.95
SQSTM1-202ENST00000389805 NRBP1Q9UHY1 535 aa20.97■□□□□ 0.95
SQSTM1-202ENST00000389805 HDAC5Q9UQL6 1122 aa20.97■□□□□ 0.95
SQSTM1-202ENST00000389805 CCDC186Q7Z3E2 898 aa20.97■□□□□ 0.95
SQSTM1-202ENST00000389805 UBE3BQ7Z3V4 1068 aa20.97■□□□□ 0.95
SQSTM1-202ENST00000389805 NDUFB9Q9Y6M9 179 aa20.97■□□□□ 0.95
SQSTM1-202ENST00000389805 GOLGA6L6A8MZA4 724 aa20.97■□□□□ 0.95
SQSTM1-202ENST00000389805 LARGE1O95461 756 aa20.97■□□□□ 0.95
SQSTM1-202ENST00000389805 KIF1AQ12756 1690 aa20.96■□□□□ 0.95
SQSTM1-202ENST00000389805 CADPS2Q86UW7 1296 aa20.96■□□□□ 0.95
SQSTM1-202ENST00000389805 LUZP1Q86V48 1076 aa20.96■□□□□ 0.95
SQSTM1-202ENST00000389805 ZNF592Q92610 1267 aa20.96■□□□□ 0.95
SQSTM1-202ENST00000389805 EVI5LQ96CN4 794 aa20.96■□□□□ 0.95
SQSTM1-202ENST00000389805 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.96■□□□□ 0.95
SQSTM1-202ENST00000389805 C5P01031 1676 aa20.96■□□□□ 0.95
SQSTM1-202ENST00000389805 F13A1P00488 732 aa20.96■□□□□ 0.95
SQSTM1-202ENST00000389805 FEZ1Q99689 392 aa20.96■□□□□ 0.95
SQSTM1-202ENST00000389805 NMIQ13287 307 aaPredicted RBP20.95■□□□□ 0.94
SQSTM1-202ENST00000389805 JAKMIP1Q96N16 626 aaKnown RBP20.95■□□□□ 0.94
SQSTM1-202ENST00000389805 FMNL2Q96PY5 1086 aa20.95■□□□□ 0.94
SQSTM1-202ENST00000389805 TMEM51Q9NW97 253 aa20.95■□□□□ 0.94
SQSTM1-202ENST00000389805 CTNNA3Q9UI47 895 aa20.95■□□□□ 0.94
SQSTM1-202ENST00000389805 SMC3Q9UQE7 1217 aa20.95■□□□□ 0.94
SQSTM1-202ENST00000389805 EPB41L2O43491 1005 aaKnown RBP20.95■□□□□ 0.94
SQSTM1-202ENST00000389805 RUFY2Q8WXA3 655 aa20.95■□□□□ 0.94
SQSTM1-202ENST00000389805 STRCP1A6NGW2 1772 aa20.95■□□□□ 0.94
SQSTM1-202ENST00000389805 SPATA31A3Q5VYP0 1347 aa20.95■□□□□ 0.94
SQSTM1-202ENST00000389805 MAPK8IP2Q13387 824 aaPredicted RBP20.94■□□□□ 0.94
SQSTM1-202ENST00000389805 ADAMTS7Q9UKP4 1686 aa20.94■□□□□ 0.94
SQSTM1-202ENST00000389805 CCDC9Q9Y3X0 531 aaKnown RBP20.94■□□□□ 0.94
SQSTM1-202ENST00000389805 CHGBP05060 677 aa20.94■□□□□ 0.94
SQSTM1-202ENST00000389805 TNNT1P13805 278 aa20.94■□□□□ 0.94
SQSTM1-202ENST00000389805 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.94■□□□□ 0.94
SQSTM1-202ENST00000389805 V9GYY5 206 aaPredicted RBP20.94■□□□□ 0.94
SQSTM1-202ENST00000389805 A0A0D9SFI3 127 aa20.93■□□□□ 0.94
SQSTM1-202ENST00000389805 SCN11AQ9UI33 1791 aa20.93■□□□□ 0.94
SQSTM1-202ENST00000389805 VPS37CA5D8V6 355 aaPredicted RBP20.93■□□□□ 0.94
SQSTM1-202ENST00000389805 CKAP2LQ8IYA6 745 aa20.93■□□□□ 0.94
SQSTM1-202ENST00000389805 LIMCH1Q9UPQ0 1083 aa20.93■□□□□ 0.94
SQSTM1-202ENST00000389805 A0A087WZG4 1122 aa20.92■□□□□ 0.94
SQSTM1-202ENST00000389805 CCDC192P0DO97 292 aa20.92■□□□□ 0.94
SQSTM1-202ENST00000389805 CCDC83Q8IWF9 413 aa20.92■□□□□ 0.94
SQSTM1-202ENST00000389805 TNS3Q68CZ2 1445 aa20.92■□□□□ 0.94
SQSTM1-202ENST00000389805 KCNJ4P48050 445 aa20.92■□□□□ 0.94
SQSTM1-202ENST00000389805 FSD1Q9BTV5 496 aa20.92■□□□□ 0.94
SQSTM1-202ENST00000389805 RBM8AQ9Y5S9 174 aaKnown RBP20.92■□□□□ 0.94
SQSTM1-202ENST00000389805 TAF6LQ9Y6J9 622 aa20.92■□□□□ 0.94
SQSTM1-202ENST00000389805 COL18A1P39060 1754 aa20.92■□□□□ 0.94
SQSTM1-202ENST00000389805 TPM3P06753 285 aa20.91■□□□□ 0.94
SQSTM1-202ENST00000389805 TFCP2Q12800 502 aa20.91■□□□□ 0.94
SQSTM1-202ENST00000389805 PTPN12Q05209 780 aaKnown RBP20.91■□□□□ 0.94
SQSTM1-202ENST00000389805 NECTIN1Q15223 517 aa20.91■□□□□ 0.94
SQSTM1-202ENST00000389805 FAM173BQ6P4H8 233 aa20.91■□□□□ 0.94
SQSTM1-202ENST00000389805 TCEANC2Q96MN5 208 aa20.91■□□□□ 0.94
SQSTM1-202ENST00000389805 CCDC171Q6TFL3 1326 aa20.91■□□□□ 0.94
SQSTM1-202ENST00000389805 NBPF26B4DH59 902 aa20.91■□□□□ 0.94
SQSTM1-202ENST00000389805 NBPF14Q5TI25 921 aa20.91■□□□□ 0.94
SQSTM1-202ENST00000389805 NBPF10Q6P3W6 841 aaKnown RBP20.91■□□□□ 0.94
SQSTM1-202ENST00000389805 TOM1L2Q6ZVM7 507 aa20.91■□□□□ 0.94
SQSTM1-202ENST00000389805 NBPF15Q8N660 670 aa20.91■□□□□ 0.94
SQSTM1-202ENST00000389805 BRINP3Q76B58 766 aa20.9■□□□□ 0.94
SQSTM1-202ENST00000389805 PRDM11Q9NQV5 511 aa20.9■□□□□ 0.94
SQSTM1-202ENST00000389805 PDRG1Q9NUG6 133 aa20.9■□□□□ 0.94
SQSTM1-202ENST00000389805 RFX5P48382 616 aaPredicted RBP20.9■□□□□ 0.94
SQSTM1-202ENST00000389805 FERMT3Q86UX7 667 aa20.9■□□□□ 0.94
SQSTM1-202ENST00000389805 DBNLQ9UJU6 430 aaKnown RBP20.9■□□□□ 0.94
SQSTM1-202ENST00000389805 SLFN14P0C7P3 912 aa20.89■□□□□ 0.94
SQSTM1-202ENST00000389805 GJB2P29033 226 aa20.89■□□□□ 0.94
SQSTM1-202ENST00000389805 CREB3L3Q68CJ9 461 aa20.89■□□□□ 0.94
SQSTM1-202ENST00000389805 TTLL7Q6ZT98 887 aa20.89■□□□□ 0.94
SQSTM1-202ENST00000389805 ZNF589Q86UQ0 364 aaPredicted RBP20.89■□□□□ 0.94
SQSTM1-202ENST00000389805 TRIM5Q9C035 493 aa20.89■□□□□ 0.94
SQSTM1-202ENST00000389805 A1BGP04217 495 aa20.89■□□□□ 0.93
SQSTM1-202ENST00000389805 NECAB1Q8N987 351 aa20.89■□□□□ 0.93
SQSTM1-202ENST00000389805 CCDC112Q8NEF3 446 aa20.89■□□□□ 0.93
SQSTM1-202ENST00000389805 DDX41Q9UJV9 622 aaKnown RBP20.89■□□□□ 0.93
SQSTM1-202ENST00000389805 TPD52L1Q16890 204 aaPredicted RBP20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms