RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 IL17RAQ96F46 866 aa16.38■□□□□ 0.21
SDC1-202ENST00000381150 SNX14Q9Y5W7 946 aa16.38■□□□□ 0.21
SDC1-202ENST00000381150 SRGAP3O43295 1099 aa16.37■□□□□ 0.21
SDC1-202ENST00000381150 PDIA6Q15084 440 aa16.37■□□□□ 0.21
SDC1-202ENST00000381150 CTNNA3Q9UI47 895 aa16.37■□□□□ 0.21
SDC1-202ENST00000381150 ZNF215Q9UL58 517 aaPredicted RBP16.37■□□□□ 0.21
SDC1-202ENST00000381150 ELF2Q15723 593 aa16.37■□□□□ 0.21
SDC1-202ENST00000381150 PI4K2BQ8TCG2 481 aa16.37■□□□□ 0.21
SDC1-202ENST00000381150 CBX8Q9HC52 389 aa16.37■□□□□ 0.21
SDC1-202ENST00000381150 PDRG1Q9NUG6 133 aa16.37■□□□□ 0.21
SDC1-202ENST00000381150 TMEM51Q9NW97 253 aa16.37■□□□□ 0.21
SDC1-202ENST00000381150 TMEM94Q12767 1356 aa16.37■□□□□ 0.21
SDC1-202ENST00000381150 ZNF165P49910 485 aa16.37■□□□□ 0.21
SDC1-202ENST00000381150 ANAPC15P60006 121 aa16.37■□□□□ 0.21
SDC1-202ENST00000381150 KSR2Q6VAB6 950 aa16.37■□□□□ 0.21
SDC1-202ENST00000381150 GTF3C6Q969F1 213 aa16.37■□□□□ 0.21
SDC1-202ENST00000381150 KDM6AO15550 1401 aaPredicted RBP16.36■□□□□ 0.21
SDC1-202ENST00000381150 BECN2A8MW95 431 aa16.36■□□□□ 0.21
SDC1-202ENST00000381150 KRT85P78386 507 aa16.36■□□□□ 0.21
SDC1-202ENST00000381150 MAP3K2Q9Y2U5 619 aa16.36■□□□□ 0.21
SDC1-202ENST00000381150 SMTNL1A8MU46 457 aa16.36■□□□□ 0.21
SDC1-202ENST00000381150 DCCP43146 1447 aa16.36■□□□□ 0.21
SDC1-202ENST00000381150 ALDH1L1O75891 902 aa16.36■□□□□ 0.21
SDC1-202ENST00000381150 ZSCAN25Q6NSZ9 544 aa16.36■□□□□ 0.21
SDC1-202ENST00000381150 KRT222Q8N1A0 295 aa16.36■□□□□ 0.21
SDC1-202ENST00000381150 CACTINQ8WUQ7 758 aaKnown RBP16.36■□□□□ 0.21
SDC1-202ENST00000381150 RPAP1Q9BWH6 1393 aaPredicted RBP16.35■□□□□ 0.21
SDC1-202ENST00000381150 PTPN14Q15678 1187 aa16.35■□□□□ 0.21
SDC1-202ENST00000381150 TTC6Q86TZ1 520 aa16.35■□□□□ 0.21
SDC1-202ENST00000381150 ZFP91Q96JP5 570 aaPredicted RBP16.35■□□□□ 0.21
SDC1-202ENST00000381150 SPATA32Q96LK8 384 aa16.35■□□□□ 0.21
SDC1-202ENST00000381150 USP27XA6NNY8 438 aa16.35■□□□□ 0.21
SDC1-202ENST00000381150 POLR3GO15318 223 aaPredicted RBP16.35■□□□□ 0.21
SDC1-202ENST00000381150 ERCC4Q92889 916 aaPredicted RBP16.35■□□□□ 0.21
SDC1-202ENST00000381150 KIF1BPQ96EK5 621 aa16.35■□□□□ 0.21
SDC1-202ENST00000381150 DDX11Q96FC9 970 aa16.35■□□□□ 0.21
SDC1-202ENST00000381150 C5P01031 1676 aa16.35■□□□□ 0.21
SDC1-202ENST00000381150 CCDC66A2RUB6 948 aa16.34■□□□□ 0.21
SDC1-202ENST00000381150 ABCC6O95255 1503 aa16.34■□□□□ 0.21
SDC1-202ENST00000381150 MEGF6O75095 1541 aa16.34■□□□□ 0.21
SDC1-202ENST00000381150 HSPA4P34932 840 aa16.34■□□□□ 0.21
SDC1-202ENST00000381150 ADCK5Q3MIX3 580 aa16.34■□□□□ 0.21
SDC1-202ENST00000381150 FMNL2Q96PY5 1086 aa16.34■□□□□ 0.21
SDC1-202ENST00000381150 MTMR6Q9Y217 621 aa16.34■□□□□ 0.21
SDC1-202ENST00000381150 USP16Q9Y5T5 823 aa16.34■□□□□ 0.21
SDC1-202ENST00000381150 MRVI1Q9Y6F6 885 aa16.34■□□□□ 0.21
SDC1-202ENST00000381150 CDC37L1Q7L3B6 337 aa16.34■□□□□ 0.21
SDC1-202ENST00000381150 HYPKQ9NX55 129 aa16.34■□□□□ 0.21
SDC1-202ENST00000381150 UTYO14607 1347 aa16.33■□□□□ 0.21
SDC1-202ENST00000381150 NPHP3Q7Z494 1330 aa16.33■□□□□ 0.21
SDC1-202ENST00000381150 USP42Q9H9J4 1324 aaKnown RBP16.33■□□□□ 0.21
SDC1-202ENST00000381150 KAZALD1Q96I82 304 aa16.33■□□□□ 0.2
SDC1-202ENST00000381150 DDX21Q9NR30 783 aaKnown RBP eCLIP16.33■□□□□ 0.2
SDC1-202ENST00000381150 PHKG2P15735 406 aa16.33■□□□□ 0.2
SDC1-202ENST00000381150 ATF3P18847 181 aa16.33■□□□□ 0.2
SDC1-202ENST00000381150 CWF19L2Q2TBE0 894 aaKnown RBP16.33■□□□□ 0.2
SDC1-202ENST00000381150 ZNF790Q6PG37 636 aa16.33■□□□□ 0.2
SDC1-202ENST00000381150 SLC52A2Q9HAB3 445 aa16.33■□□□□ 0.2
SDC1-202ENST00000381150 CTIFO43310 598 aaKnown RBP16.32■□□□□ 0.2
SDC1-202ENST00000381150 CCDC144BQ3MJ40 725 aa16.32■□□□□ 0.2
SDC1-202ENST00000381150 CCDC144CPQ8IYA2 1237 aa16.32■□□□□ 0.2
SDC1-202ENST00000381150 KIF18AQ8NI77 898 aa16.32■□□□□ 0.2
SDC1-202ENST00000381150 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.32■□□□□ 0.2
SDC1-202ENST00000381150 CYP46A1Q9Y6A2 500 aa16.32■□□□□ 0.2
SDC1-202ENST00000381150 SKILP12757 684 aa16.32■□□□□ 0.2
SDC1-202ENST00000381150 DDX41Q9UJV9 622 aaKnown RBP16.32■□□□□ 0.2
SDC1-202ENST00000381150 SLC39A6Q13433 755 aa16.32■□□□□ 0.2
SDC1-202ENST00000381150 KMT5BQ4FZB7 885 aa16.32■□□□□ 0.2
SDC1-202ENST00000381150 CERS3Q8IU89 383 aa16.32■□□□□ 0.2
SDC1-202ENST00000381150 TIGD1Q96MW7 591 aa16.32■□□□□ 0.2
SDC1-202ENST00000381150 SLFN14P0C7P3 912 aa16.31■□□□□ 0.2
SDC1-202ENST00000381150 TNNT3P45378 269 aaPredicted RBP16.31■□□□□ 0.2
SDC1-202ENST00000381150 TAF3Q5VWG9 929 aa16.31■□□□□ 0.2
SDC1-202ENST00000381150 CNTROBQ8N137 903 aa16.31■□□□□ 0.2
SDC1-202ENST00000381150 EPB41L2O43491 1005 aaKnown RBP16.31■□□□□ 0.2
SDC1-202ENST00000381150 ZNF75DP51815 510 aa16.31■□□□□ 0.2
SDC1-202ENST00000381150 IRX5P78411 483 aaPredicted RBP16.31■□□□□ 0.2
SDC1-202ENST00000381150 CABLES1Q8TDN4 633 aa16.31■□□□□ 0.2
SDC1-202ENST00000381150 NLRP2Q9NX02 1062 aa16.31■□□□□ 0.2
SDC1-202ENST00000381150 TERF2Q15554 542 aa16.3■□□□□ 0.2
SDC1-202ENST00000381150 NFATC2IPQ8NCF5 419 aa16.3■□□□□ 0.2
SDC1-202ENST00000381150 LINS1Q8NG48 757 aa16.3■□□□□ 0.2
SDC1-202ENST00000381150 RAPGEF4Q8WZA2 1011 aa16.3■□□□□ 0.2
SDC1-202ENST00000381150 FUCA2Q9BTY2 467 aa16.3■□□□□ 0.2
SDC1-202ENST00000381150 PAXBP1Q9Y5B6 917 aa16.3■□□□□ 0.2
SDC1-202ENST00000381150 LRP10Q7Z4F1 713 aa16.3■□□□□ 0.2
SDC1-202ENST00000381150 FAM177A1Q8N128 213 aaPredicted RBP16.3■□□□□ 0.2
SDC1-202ENST00000381150 NR1I2O75469 434 aa16.3■□□□□ 0.2
SDC1-202ENST00000381150 ZKSCAN1P17029 563 aaPredicted RBP16.3■□□□□ 0.2
SDC1-202ENST00000381150 ME3Q16798 604 aa16.3■□□□□ 0.2
SDC1-202ENST00000381150 HSP90AB4PQ58FF6 505 aa16.3■□□□□ 0.2
SDC1-202ENST00000381150 FBXO38Q6PIJ6 1188 aa16.3■□□□□ 0.2
SDC1-202ENST00000381150 HOMER1Q86YM7 354 aa16.3■□□□□ 0.2
SDC1-202ENST00000381150 PKD1L3Q7Z443 1732 aa16.3■□□□□ 0.2
SDC1-202ENST00000381150 IGKV5-2P06315 115 aa16.29■□□□□ 0.2
SDC1-202ENST00000381150 HSP90B1P14625 803 aaKnown RBP16.29■□□□□ 0.2
SDC1-202ENST00000381150 PTH1RQ03431 593 aa16.29■□□□□ 0.2
SDC1-202ENST00000381150 CCDC9Q9Y3X0 531 aaKnown RBP16.29■□□□□ 0.2
SDC1-202ENST00000381150 XIRP1Q702N8 1843 aaKnown RBP16.29■□□□□ 0.2
SDC1-202ENST00000381150 PLEKHG2Q9H7P9 1386 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 259.5 ms