RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 ZNF608Q9ULD9 1512 aaPredicted RBP12.09□□□□□ -0.47
RTN3-206ENST00000377819 IFIT3O14879 490 aaKnown RBP12.09□□□□□ -0.47
RTN3-206ENST00000377819 PSMD6Q15008 389 aa12.09□□□□□ -0.47
RTN3-206ENST00000377819 CCDC121Q6ZUS5 278 aa12.09□□□□□ -0.47
RTN3-206ENST00000377819 USP25Q9UHP3 1055 aa12.09□□□□□ -0.47
RTN3-206ENST00000377819 RABGAP1Q9Y3P9 1069 aa12.09□□□□□ -0.47
RTN3-206ENST00000377819 BAG3O95817 575 aa12.09□□□□□ -0.47
RTN3-206ENST00000377819 ERCC3P19447 782 aa12.09□□□□□ -0.47
RTN3-206ENST00000377819 CAMK4Q16566 473 aa12.09□□□□□ -0.47
RTN3-206ENST00000377819 ATP6V0A2Q9Y487 856 aa12.09□□□□□ -0.47
RTN3-206ENST00000377819 IVLP07476 585 aa12.09□□□□□ -0.47
RTN3-206ENST00000377819 CCT6AP40227 531 aaKnown RBP12.09□□□□□ -0.47
RTN3-206ENST00000377819 NEDD9Q14511 834 aa12.09□□□□□ -0.47
RTN3-206ENST00000377819 AFAP1L2Q8N4X5 818 aa12.09□□□□□ -0.47
RTN3-206ENST00000377819 VCX3AQ9NNX9 186 aa12.09□□□□□ -0.47
RTN3-206ENST00000377819 SLC8A3P57103 927 aa12.08□□□□□ -0.47
RTN3-206ENST00000377819 RPGRQ92834 1020 aaKnown RBP12.08□□□□□ -0.47
RTN3-206ENST00000377819 GLRX3O76003 335 aaKnown RBP12.08□□□□□ -0.48
RTN3-206ENST00000377819 GNG11P61952 73 aa12.08□□□□□ -0.48
RTN3-206ENST00000377819 SEPT14Q6ZU15 432 aa12.08□□□□□ -0.48
RTN3-206ENST00000377819 CPLX4Q7Z7G2 160 aa12.08□□□□□ -0.48
RTN3-206ENST00000377819 TRIM47Q96LD4 638 aa12.08□□□□□ -0.48
RTN3-206ENST00000377819 EXOSC9Q06265 439 aaKnown RBP12.08□□□□□ -0.48
RTN3-206ENST00000377819 SPAG1Q07617 926 aa12.08□□□□□ -0.48
RTN3-206ENST00000377819 SSRP1Q08945 709 aaKnown RBP12.08□□□□□ -0.48
RTN3-206ENST00000377819 PPP4R3BQ5MIZ7 849 aa12.08□□□□□ -0.48
RTN3-206ENST00000377819 TRMT1Q9NXH9 659 aaKnown RBP12.08□□□□□ -0.48
RTN3-206ENST00000377819 MRVI1Q9Y6F6 885 aa12.08□□□□□ -0.48
RTN3-206ENST00000377819 IQGAP2Q13576 1575 aa12.08□□□□□ -0.48
RTN3-206ENST00000377819 ZNF213O14771 459 aa12.08□□□□□ -0.48
RTN3-206ENST00000377819 CIB2O75838 187 aa12.08□□□□□ -0.48
RTN3-206ENST00000377819 ZNF853P0CG23 659 aa12.08□□□□□ -0.48
RTN3-206ENST00000377819 LACTBP83111 547 aaPredicted RBP12.08□□□□□ -0.48
RTN3-206ENST00000377819 CACNA2D3Q8IZS8 1091 aa12.08□□□□□ -0.48
RTN3-206ENST00000377819 SPINK5Q9NQ38 1064 aaPredicted RBP12.08□□□□□ -0.48
RTN3-206ENST00000377819 BIN2Q9UBW5 565 aaPredicted RBP12.08□□□□□ -0.48
RTN3-206ENST00000377819 MTRF1LQ9UGC7 380 aaKnown RBP12.08□□□□□ -0.48
RTN3-206ENST00000377819 PSPC1Q8WXF1 523 aaKnown RBP12.07□□□□□ -0.48
RTN3-206ENST00000377819 DNAJC21Q5F1R6 531 aaKnown RBP12.07□□□□□ -0.48
RTN3-206ENST00000377819 SIRT1Q96EB6 747 aa12.07□□□□□ -0.48
RTN3-206ENST00000377819 MMRN2Q9H8L6 949 aa12.07□□□□□ -0.48
RTN3-206ENST00000377819 SH2B1Q9NRF2 756 aaPredicted RBP12.07□□□□□ -0.48
RTN3-206ENST00000377819 GOLGA8AA7E2F4 631 aa12.07□□□□□ -0.48
RTN3-206ENST00000377819 GOLGA8BA8MQT2 603 aa12.07□□□□□ -0.48
RTN3-206ENST00000377819 GJC1P36383 396 aa12.07□□□□□ -0.48
RTN3-206ENST00000377819 RASA3Q14644 834 aa12.07□□□□□ -0.48
RTN3-206ENST00000377819 NAA16Q6N069 864 aaPredicted RBP12.07□□□□□ -0.48
RTN3-206ENST00000377819 FYCO1Q9BQS8 1478 aa12.07□□□□□ -0.48
RTN3-206ENST00000377819 EBAG9O00559 213 aa12.07□□□□□ -0.48
RTN3-206ENST00000377819 GTF2A1P52655 376 aaPredicted RBP12.07□□□□□ -0.48
RTN3-206ENST00000377819 PDE4BQ07343 736 aa12.07□□□□□ -0.48
RTN3-206ENST00000377819 PDE3AQ14432 1141 aa12.07□□□□□ -0.48
RTN3-206ENST00000377819 SH2D4BQ5SQS7 431 aa12.07□□□□□ -0.48
RTN3-206ENST00000377819 CYB5RLQ6IPT4 315 aa12.07□□□□□ -0.48
RTN3-206ENST00000377819 VAT1LQ9HCJ6 419 aa12.07□□□□□ -0.48
RTN3-206ENST00000377819 CALCOCO2Q13137 446 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 SPC25Q9HBM1 224 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 ARFGAP3Q9NP61 516 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 CPSF2Q9P2I0 782 aaKnown RBP12.06□□□□□ -0.48
RTN3-206ENST00000377819 CLEC11AQ9Y240 323 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 CAVIN2O95810 425 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 CCDC102BQ68D86 513 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 CTAGE6Q86UF2 777 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 VCXQ9H320 206 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 IL1RAPL2Q9NP60 686 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 DDX19AQ9NUU7 478 aaKnown RBP12.06□□□□□ -0.48
RTN3-206ENST00000377819 RMND1Q9NWS8 449 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 BRPF3Q9ULD4 1205 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 MAGI3Q5TCQ9 1506 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 HS2ST1Q7LGA3 356 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 RPAP2Q8IXW5 612 aaPredicted RBP12.06□□□□□ -0.48
RTN3-206ENST00000377819 GOLGA1Q92805 767 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 C1orf115Q9H7X2 142 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 CTAGE15A4D2H0 777 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 CTAGE8P0CG41 777 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 DPH6Q7L8W6 267 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 CTAGE4Q8IX94 777 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 RSRC1Q96IZ7 334 aaKnown RBP12.06□□□□□ -0.48
RTN3-206ENST00000377819 FAM204AQ9H8W3 233 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 EXOC1Q9NV70 894 aa12.06□□□□□ -0.48
RTN3-206ENST00000377819 TLDC2A0PJX2 215 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 TSPY2A6NKD2 308 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 SLC5A1P13866 664 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 IARSP41252 1262 aaKnown RBP12.05□□□□□ -0.48
RTN3-206ENST00000377819 MUM1L1Q5H9M0 696 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 C10orf67Q8IYJ2 551 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 ZSWIM4Q9H7M6 989 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 C6orf50Q9HD87 102 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 SAMD15Q9P1V8 674 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 PPME1Q9Y570 386 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 XPCQ01831 940 aaPredicted RBP12.05□□□□□ -0.48
RTN3-206ENST00000377819 CCDC114Q96M63 670 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 CSRNP2Q9H175 543 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 IFIT5Q13325 482 aaKnown RBP12.05□□□□□ -0.48
RTN3-206ENST00000377819 SNW1Q13573 536 aaKnown RBP12.05□□□□□ -0.48
RTN3-206ENST00000377819 RILPL1Q5EBL4 403 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 CCDC183Q5T5S1 534 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 SULT6B1Q6IMI4 303 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.05□□□□□ -0.481e-10■■■□□ 14.8
RTN3-206ENST00000377819 KIFC2Q96AC6 838 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms