RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 BTBD11A6QL63 1104 aa13.19□□□□□ -0.3
CCDC40-203ENST00000374877 SHANK3Q9BYB0 1731 aa13.19□□□□□ -0.3
CCDC40-203ENST00000374877 SPATA31A1Q5TZJ5 1347 aa13.19□□□□□ -0.3
CCDC40-203ENST00000374877 TPM3P06753 285 aa13.19□□□□□ -0.3
CCDC40-203ENST00000374877 PTH1RQ03431 593 aa13.19□□□□□ -0.3
CCDC40-203ENST00000374877 CYP46A1Q9Y6A2 500 aa13.19□□□□□ -0.3
CCDC40-203ENST00000374877 NBPF7P0C2Y1 421 aaPredicted RBP13.18□□□□□ -0.3
CCDC40-203ENST00000374877 PTGS1P23219 599 aa13.18□□□□□ -0.3
CCDC40-203ENST00000374877 EIF4A1P60842 406 aaKnown RBP13.18□□□□□ -0.3
CCDC40-203ENST00000374877 KCNJ4P48050 445 aa13.18□□□□□ -0.3
CCDC40-203ENST00000374877 FAM173BQ6P4H8 233 aa13.18□□□□□ -0.3
CCDC40-203ENST00000374877 DRC7Q8IY82 874 aa13.18□□□□□ -0.3
CCDC40-203ENST00000374877 SPATA31A5Q5VU36 1347 aa13.18□□□□□ -0.3
CCDC40-203ENST00000374877 SPATA31A7Q8IWB4 1347 aa13.18□□□□□ -0.3
CCDC40-203ENST00000374877 RUFY2Q8WXA3 655 aa13.18□□□□□ -0.3
CCDC40-203ENST00000374877 HEG1Q9ULI3 1381 aa13.17□□□□□ -0.3
CCDC40-203ENST00000374877 ERVV-2B6SEH9 535 aa13.17□□□□□ -0.3
CCDC40-203ENST00000374877 HSPA1LP34931 641 aa13.17□□□□□ -0.3
CCDC40-203ENST00000374877 POLA2Q14181 598 aa13.17□□□□□ -0.3
CCDC40-203ENST00000374877 MAP3K11Q16584 847 aa13.17□□□□□ -0.3
CCDC40-203ENST00000374877 LARP1BQ659C4 914 aaKnown RBP13.17□□□□□ -0.3
CCDC40-203ENST00000374877 LUZP1Q86V48 1076 aa13.17□□□□□ -0.3
CCDC40-203ENST00000374877 CKAP2LQ8IYA6 745 aa13.17□□□□□ -0.3
CCDC40-203ENST00000374877 NUP62CLQ9H1M0 184 aa13.17□□□□□ -0.3
CCDC40-203ENST00000374877 VPS53Q5VIR6 699 aa13.17□□□□□ -0.3
CCDC40-203ENST00000374877 FNBP4Q8N3X1 1017 aaPredicted RBP13.17□□□□□ -0.3
CCDC40-203ENST00000374877 FAM200AQ8TCP9 573 aa13.17□□□□□ -0.3
CCDC40-203ENST00000374877 LRP6O75581 1613 aa13.17□□□□□ -0.3
CCDC40-203ENST00000374877 GLRX3O76003 335 aaKnown RBP13.17□□□□□ -0.3
CCDC40-203ENST00000374877 KRT85P78386 507 aa13.17□□□□□ -0.3
CCDC40-203ENST00000374877 ME3Q16798 604 aa13.17□□□□□ -0.3
CCDC40-203ENST00000374877 BARGINQ6ZT62 677 aa13.17□□□□□ -0.3
CCDC40-203ENST00000374877 TTC6Q86TZ1 520 aa13.17□□□□□ -0.3
CCDC40-203ENST00000374877 ZSCAN31Q96LW9 406 aaPredicted RBP13.17□□□□□ -0.3
CCDC40-203ENST00000374877 SH2B1Q9NRF2 756 aaPredicted RBP13.17□□□□□ -0.3
CCDC40-203ENST00000374877 TNS2Q63HR2 1409 aa13.17□□□□□ -0.3
CCDC40-203ENST00000374877 GOLGA6L4A6NEF3 574 aa13.16□□□□□ -0.3
CCDC40-203ENST00000374877 LIG1P18858 919 aa13.16□□□□□ -0.3
CCDC40-203ENST00000374877 U2AF2P26368 475 aaKnown RBP eCLIP13.16□□□□□ -0.34e-6■■□□□ 13.2
CCDC40-203ENST00000374877 TYRO3Q06418 890 aa13.16□□□□□ -0.3
CCDC40-203ENST00000374877 UTP14CQ5TAP6 766 aaKnown RBP13.16□□□□□ -0.3
CCDC40-203ENST00000374877 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.16□□□□□ -0.3
CCDC40-203ENST00000374877 ZKSCAN1P17029 563 aaPredicted RBP13.16□□□□□ -0.3
CCDC40-203ENST00000374877 ST3GAL1Q11201 340 aa13.15□□□□□ -0.3
CCDC40-203ENST00000374877 VPS72Q15906 364 aa13.15□□□□□ -0.3
CCDC40-203ENST00000374877 CDC37L1Q7L3B6 337 aa13.15□□□□□ -0.3
CCDC40-203ENST00000374877 CCDC186Q7Z3E2 898 aa13.15□□□□□ -0.3
CCDC40-203ENST00000374877 CLASRPQ8N2M8 674 aaKnown RBP13.15□□□□□ -0.3
CCDC40-203ENST00000374877 TNMDQ9H2S6 317 aa13.15□□□□□ -0.3
CCDC40-203ENST00000374877 BCL9LQ86UU0 1499 aa13.15□□□□□ -0.3
CCDC40-203ENST00000374877 HSP90AB4PQ58FF6 505 aa13.15□□□□□ -0.3
CCDC40-203ENST00000374877 C16orf45Q96MC5 204 aaPredicted RBP13.15□□□□□ -0.3
CCDC40-203ENST00000374877 ZSWIM6Q9HCJ5 1215 aa13.15□□□□□ -0.3
CCDC40-203ENST00000374877 PI4KAP2A4QPH2 592 aa13.14□□□□□ -0.31
CCDC40-203ENST00000374877 ANXA1P04083 346 aa13.14□□□□□ -0.31
CCDC40-203ENST00000374877 CABP4P57796 275 aa13.14□□□□□ -0.31
CCDC40-203ENST00000374877 LRMPQ12912 555 aa13.14□□□□□ -0.31
CCDC40-203ENST00000374877 PI4KAP1Q8N8J0 262 aa13.14□□□□□ -0.31
CCDC40-203ENST00000374877 TCEANC2Q96MN5 208 aa13.14□□□□□ -0.31
CCDC40-203ENST00000374877 MRVI1Q9Y6F6 885 aa13.14□□□□□ -0.31
CCDC40-203ENST00000374877 TRIM5Q9C035 493 aa13.14□□□□□ -0.31
CCDC40-203ENST00000374877 DACT1Q9NYF0 836 aa13.14□□□□□ -0.31
CCDC40-203ENST00000374877 TFIP11Q9UBB9 837 aaKnown RBP13.14□□□□□ -0.31
CCDC40-203ENST00000374877 TPCN1Q9ULQ1 816 aa13.14□□□□□ -0.31
CCDC40-203ENST00000374877 ANO6Q4KMQ2 910 aa13.14□□□□□ -0.31
CCDC40-203ENST00000374877 NGLY1Q96IV0 654 aa13.14□□□□□ -0.31
CCDC40-203ENST00000374877 IFIT2P09913 472 aaKnown RBP13.13□□□□□ -0.31
CCDC40-203ENST00000374877 ZNF790Q6PG37 636 aa13.13□□□□□ -0.31
CCDC40-203ENST00000374877 NFATC2IPQ8NCF5 419 aa13.13□□□□□ -0.31
CCDC40-203ENST00000374877 RBM8AQ9Y5S9 174 aaKnown RBP13.13□□□□□ -0.31
CCDC40-203ENST00000374877 TTC41PQ6P2S7 1318 aa13.13□□□□□ -0.31
CCDC40-203ENST00000374877 EXOC5O00471 708 aa13.13□□□□□ -0.31
CCDC40-203ENST00000374877 KCNQ3O43525 872 aa13.13□□□□□ -0.31
CCDC40-203ENST00000374877 DNAAF4Q8WXU2 420 aa13.13□□□□□ -0.31
CCDC40-203ENST00000374877 ECHDC1Q9NTX5 307 aa13.13□□□□□ -0.31
CCDC40-203ENST00000374877 CHPF2Q9P2E5 772 aa13.13□□□□□ -0.31
CCDC40-203ENST00000374877 NRBP1Q9UHY1 535 aa13.13□□□□□ -0.31
CCDC40-203ENST00000374877 PXDNLA1KZ92 1463 aa13.13□□□□□ -0.31
CCDC40-203ENST00000374877 GPATCH3Q96I76 525 aa13.13□□□□□ -0.31
CCDC40-203ENST00000374877 C8orf37Q96NL8 207 aa13.13□□□□□ -0.31
CCDC40-203ENST00000374877 CBX8Q9HC52 389 aa13.13□□□□□ -0.31
CCDC40-203ENST00000374877 GTPBP4Q9BZE4 634 aaKnown RBP13.12□□□□□ -0.31
CCDC40-203ENST00000374877 TM6SF1Q9BZW5 370 aa13.12□□□□□ -0.31
CCDC40-203ENST00000374877 BCL11BQ9C0K0 894 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-203ENST00000374877 CCDC171Q6TFL3 1326 aa13.12□□□□□ -0.31
CCDC40-203ENST00000374877 PAPPAQ13219 1627 aa13.12□□□□□ -0.31
CCDC40-203ENST00000374877 IGSF3O75054 1194 aa13.12□□□□□ -0.31
CCDC40-203ENST00000374877 GIGYF1O75420 1035 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-203ENST00000374877 CREB3L3Q68CJ9 461 aa13.12□□□□□ -0.31
CCDC40-203ENST00000374877 ANKRD7Q92527 254 aa13.12□□□□□ -0.31
CCDC40-203ENST00000374877 SPATA32Q96LK8 384 aa13.12□□□□□ -0.31
CCDC40-203ENST00000374877 PA2G4Q9UQ80 394 aaKnown RBP13.12□□□□□ -0.31
CCDC40-203ENST00000374877 STK3Q13188 491 aa13.12□□□□□ -0.31
CCDC40-203ENST00000374877 PDCP20941 246 aa13.11□□□□□ -0.31
CCDC40-203ENST00000374877 COL9A3Q14050 684 aaPredicted RBP13.11□□□□□ -0.31
CCDC40-203ENST00000374877 NECTIN1Q15223 517 aa13.11□□□□□ -0.31
CCDC40-203ENST00000374877 BEND3Q5T5X7 828 aa13.11□□□□□ -0.31
CCDC40-203ENST00000374877 BICD2Q8TD16 824 aa13.11□□□□□ -0.31
CCDC40-203ENST00000374877 FAM227BQ96M60 508 aa13.11□□□□□ -0.31
CCDC40-203ENST00000374877 CTIFO43310 598 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms