RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 NEK4P51957 841 aa10.5□□□□□ -0.73
SNRNP40-202ENST00000373720 CASP7P55210 303 aa10.5□□□□□ -0.73
SNRNP40-202ENST00000373720 VPS53Q5VIR6 699 aa10.5□□□□□ -0.73
SNRNP40-202ENST00000373720 ISCA1Q9BUE6 129 aa10.5□□□□□ -0.73
SNRNP40-202ENST00000373720 TOM1O60784 492 aa10.49□□□□□ -0.73
SNRNP40-202ENST00000373720 SASH1O94885 1247 aa10.49□□□□□ -0.73
SNRNP40-202ENST00000373720 HMGB1P09429 215 aaKnown RBP10.49□□□□□ -0.73
SNRNP40-202ENST00000373720 IL6STP40189 918 aaPredicted RBP10.49□□□□□ -0.73
SNRNP40-202ENST00000373720 RFX5P48382 616 aaPredicted RBP10.49□□□□□ -0.73
SNRNP40-202ENST00000373720 NUBP1P53384 320 aa10.49□□□□□ -0.73
SNRNP40-202ENST00000373720 PTPN12Q05209 780 aaKnown RBP10.49□□□□□ -0.73
SNRNP40-202ENST00000373720 BARGINQ6ZT62 677 aa10.49□□□□□ -0.73
SNRNP40-202ENST00000373720 NUTM1Q86Y26 1132 aa10.49□□□□□ -0.73
SNRNP40-202ENST00000373720 SMARCC1Q92922 1105 aaPredicted RBP10.49□□□□□ -0.73
SNRNP40-202ENST00000373720 BTG4Q9NY30 223 aa10.49□□□□□ -0.73
SNRNP40-202ENST00000373720 ARFGEF2Q9Y6D5 1785 aa10.49□□□□□ -0.73
SNRNP40-202ENST00000373720 BCL9O00512 1426 aa10.49□□□□□ -0.73
SNRNP40-202ENST00000373720 GLI3P10071 1580 aa10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 TRAK2O60296 914 aa10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 IGSF3O75054 1194 aa10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 ANXA1P04083 346 aa10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 CYP2E1P05181 493 aaPredicted RBP10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 ZFYP08048 801 aaPredicted RBP10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 CSPP1Q1MSJ5 1256 aa10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 TNNI3KQ59H18 835 aa10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 GIGYF2Q6Y7W6 1299 aaKnown RBP10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 IFNL1Q8IU54 200 aa10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 ZBTB38Q8NAP3 1195 aaPredicted RBP10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 SLAIN1Q8ND83 568 aa10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 RGS22Q8NE09 1264 aa10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 MAP4K1Q92918 833 aa10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 TNPO1Q92973 898 aaKnown RBP10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 FAM212AQ96EL1 285 aa10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 ZNF512BQ96KM6 892 aaPredicted RBP10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 TMEM106CQ9BVX2 250 aa10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 LSG1Q9H089 658 aaKnown RBP10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 LIMCH1Q9UPQ0 1083 aa10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 FPGT-TNNI3KV9GXZ4 949 aa10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 SPEF2Q9C093 1822 aa10.48□□□□□ -0.73
SNRNP40-202ENST00000373720 CICQ96RK0 1608 aaPredicted RBP10.47□□□□□ -0.73
SNRNP40-202ENST00000373720 PRAMEF22A3QJZ6 481 aa10.47□□□□□ -0.73
SNRNP40-202ENST00000373720 NBPF26B4DH59 902 aa10.47□□□□□ -0.73
SNRNP40-202ENST00000373720 PDCP20941 246 aa10.47□□□□□ -0.73
SNRNP40-202ENST00000373720 CCDC57Q2TAC2 916 aa10.47□□□□□ -0.73
SNRNP40-202ENST00000373720 KLHL40Q2TBA0 621 aa10.47□□□□□ -0.73
SNRNP40-202ENST00000373720 NBPF14Q5TI25 921 aa10.47□□□□□ -0.73
SNRNP40-202ENST00000373720 NBPF10Q6P3W6 841 aaKnown RBP10.47□□□□□ -0.73
SNRNP40-202ENST00000373720 UBE3BQ7Z3V4 1068 aa10.47□□□□□ -0.73
SNRNP40-202ENST00000373720 CDAN1Q8IWY9 1227 aa10.47□□□□□ -0.73
SNRNP40-202ENST00000373720 NBPF15Q8N660 670 aa10.47□□□□□ -0.73
SNRNP40-202ENST00000373720 DDX54Q8TDD1 881 aaKnown RBP10.47□□□□□ -0.73
SNRNP40-202ENST00000373720 EAF2Q96CJ1 260 aaPredicted RBP10.47□□□□□ -0.73
SNRNP40-202ENST00000373720 HAUS7Q99871 368 aa10.47□□□□□ -0.73
SNRNP40-202ENST00000373720 STRN4Q9NRL3 753 aa10.47□□□□□ -0.73
SNRNP40-202ENST00000373720 HELLSQ9NRZ9 838 aa10.47□□□□□ -0.73
SNRNP40-202ENST00000373720 CYP46A1Q9Y6A2 500 aa10.47□□□□□ -0.73
SNRNP40-202ENST00000373720 WDR33Q9C0J8 1336 aaKnown RBP10.47□□□□□ -0.73
SNRNP40-202ENST00000373720 AK9Q5TCS8 1911 aa10.46□□□□□ -0.73
SNRNP40-202ENST00000373720 EYA2O00167 538 aa10.46□□□□□ -0.73
SNRNP40-202ENST00000373720 MBD3O95983 291 aa10.46□□□□□ -0.73
SNRNP40-202ENST00000373720 CSF1RP07333 972 aa10.46□□□□□ -0.73
SNRNP40-202ENST00000373720 MRE11P49959 708 aa10.46□□□□□ -0.73
SNRNP40-202ENST00000373720 FOXO4P98177 505 aa10.46□□□□□ -0.73
SNRNP40-202ENST00000373720 NECTIN1Q15223 517 aa10.46□□□□□ -0.73
SNRNP40-202ENST00000373720 USPL1Q5W0Q7 1092 aa10.46□□□□□ -0.73
SNRNP40-202ENST00000373720 TMED8Q6PL24 325 aaPredicted RBP10.46□□□□□ -0.73
SNRNP40-202ENST00000373720 TMX3Q96JJ7 454 aa10.46□□□□□ -0.73
SNRNP40-202ENST00000373720 ZSWIM6Q9HCJ5 1215 aa10.46□□□□□ -0.73
SNRNP40-202ENST00000373720 CCDC171Q6TFL3 1326 aa10.46□□□□□ -0.73
SNRNP40-202ENST00000373720 MAP3K15Q6ZN16 1313 aa10.46□□□□□ -0.73
SNRNP40-202ENST00000373720 JCADQ9P266 1359 aa10.46□□□□□ -0.74
SNRNP40-202ENST00000373720 SHANK3Q9BYB0 1731 aa10.46□□□□□ -0.74
SNRNP40-202ENST00000373720 NWD2Q9ULI1 1742 aa10.46□□□□□ -0.74
SNRNP40-202ENST00000373720 NUP188Q5SRE5 1749 aa10.45□□□□□ -0.74
SNRNP40-202ENST00000373720 ZNF831Q5JPB2 1677 aa10.45□□□□□ -0.74
SNRNP40-202ENST00000373720 ROBO1Q9Y6N7 1651 aa10.45□□□□□ -0.74
SNRNP40-202ENST00000373720 PALLDQ8WX93 1383 aa10.45□□□□□ -0.74
SNRNP40-202ENST00000373720 PLCG2P16885 1265 aa10.45□□□□□ -0.74
SNRNP40-202ENST00000373720 PARP10Q53GL7 1025 aa10.45□□□□□ -0.74
SNRNP40-202ENST00000373720 CCDC158Q5M9N0 1113 aa10.45□□□□□ -0.74
SNRNP40-202ENST00000373720 ZSCAN25Q6NSZ9 544 aa10.45□□□□□ -0.74
SNRNP40-202ENST00000373720 LMBR1LQ6UX01 489 aa10.45□□□□□ -0.74
SNRNP40-202ENST00000373720 PIGBQ92521 554 aa10.45□□□□□ -0.74
SNRNP40-202ENST00000373720 CEP126Q9P2H0 1117 aa10.45□□□□□ -0.74
SNRNP40-202ENST00000373720 AFDNP55196 1824 aaKnown RBP10.44□□□□□ -0.74
SNRNP40-202ENST00000373720 SH3TC1Q8TE82 1336 aa10.44□□□□□ -0.74
SNRNP40-202ENST00000373720 GOLGA6L3A6NEY3 463 aa10.44□□□□□ -0.74
SNRNP40-202ENST00000373720 SSFA2P28290 1259 aa10.44□□□□□ -0.74
SNRNP40-202ENST00000373720 CWC27Q6UX04 472 aaKnown RBP10.44□□□□□ -0.74
SNRNP40-202ENST00000373720 RUFY3Q7L099 469 aa10.44□□□□□ -0.74
SNRNP40-202ENST00000373720 UNC5CLQ8IV45 518 aa10.44□□□□□ -0.74
SNRNP40-202ENST00000373720 KBTBD3Q8NAB2 608 aa10.44□□□□□ -0.74
SNRNP40-202ENST00000373720 SYAP1Q96A49 352 aaPredicted RBP10.44□□□□□ -0.74
SNRNP40-202ENST00000373720 FSD1Q9BTV5 496 aa10.44□□□□□ -0.74
SNRNP40-202ENST00000373720 KIF3AQ9Y496 699 aa10.44□□□□□ -0.74
SNRNP40-202ENST00000373720 SNX14Q9Y5W7 946 aa10.44□□□□□ -0.74
SNRNP40-202ENST00000373720 LTBP4Q8N2S1 1624 aa10.44□□□□□ -0.74
SNRNP40-202ENST00000373720 MED23Q9ULK4 1368 aa10.43□□□□□ -0.74
SNRNP40-202ENST00000373720 SPATA31A1Q5TZJ5 1347 aa10.43□□□□□ -0.74
SNRNP40-202ENST00000373720 BAG4O95429 457 aaKnown RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms