RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 IVNS1ABPQ9Y6Y0 642 aa4.88□□□□□ -1.63
MCF2-202ENST00000370573 DLC1Q96QB1 1528 aa4.88□□□□□ -1.63
MCF2-202ENST00000370573 ROBO2Q9HCK4 1378 aa4.88□□□□□ -1.63
MCF2-202ENST00000370573 SBNO2Q9Y2G9 1366 aa4.88□□□□□ -1.63
MCF2-202ENST00000370573 RHOQP17081 205 aa4.88□□□□□ -1.63
MCF2-202ENST00000370573 IRF7Q92985 503 aa4.88□□□□□ -1.63
MCF2-202ENST00000370573 POGKQ9P215 609 aa4.88□□□□□ -1.63
MCF2-202ENST00000370573 POLR1AO95602 1720 aaPredicted RBP4.87□□□□□ -1.63
MCF2-202ENST00000370573 QRICH2Q9H0J4 1663 aa4.87□□□□□ -1.63
MCF2-202ENST00000370573 UNCXA6NJT0 531 aa4.87□□□□□ -1.63
MCF2-202ENST00000370573 WASHC4Q2M389 1173 aa4.87□□□□□ -1.63
MCF2-202ENST00000370573 ZNF592Q92610 1267 aa4.87□□□□□ -1.63
MCF2-202ENST00000370573 DOLKQ9UPQ8 538 aa4.87□□□□□ -1.63
MCF2-202ENST00000370573 DIP2AQ14689 1571 aa4.87□□□□□ -1.63
MCF2-202ENST00000370573 PIK3CDO00329 1044 aa4.87□□□□□ -1.63
MCF2-202ENST00000370573 KCNA6P17658 529 aa4.87□□□□□ -1.63
MCF2-202ENST00000370573 PHTF2Q8N3S3 785 aa4.87□□□□□ -1.63
MCF2-202ENST00000370573 CCDC155Q8N6L0 562 aa4.87□□□□□ -1.63
MCF2-202ENST00000370573 PIK3R4Q99570 1358 aa4.87□□□□□ -1.63
MCF2-202ENST00000370573 STRCQ7RTU9 1775 aa4.87□□□□□ -1.63
MCF2-202ENST00000370573 FAM135BQ49AJ0 1406 aa4.86□□□□□ -1.63
MCF2-202ENST00000370573 CPS1P31327 1500 aa4.86□□□□□ -1.63
MCF2-202ENST00000370573 TULP4Q9NRJ4 1543 aa4.86□□□□□ -1.63
MCF2-202ENST00000370573 KNDC1Q76NI1 1749 aa4.86□□□□□ -1.63
MCF2-202ENST00000370573 CCDC27Q2M243 656 aa4.86□□□□□ -1.63
MCF2-202ENST00000370573 CDK19Q9BWU1 502 aa4.86□□□□□ -1.63
MCF2-202ENST00000370573 USTQ9Y2C2 406 aa4.86□□□□□ -1.63
MCF2-202ENST00000370573 CHD2O14647 1828 aaKnown RBP4.86□□□□□ -1.63
MCF2-202ENST00000370573 MYCP01106 439 aaPredicted RBP4.86□□□□□ -1.63
MCF2-202ENST00000370573 CDCA8Q53HL2 280 aa4.86□□□□□ -1.63
MCF2-202ENST00000370573 SLC27A3Q5K4L6 730 aa4.86□□□□□ -1.63
MCF2-202ENST00000370573 LYSMD3Q7Z3D4 306 aa4.86□□□□□ -1.63
MCF2-202ENST00000370573 CYP2U1Q7Z449 544 aa4.86□□□□□ -1.63
MCF2-202ENST00000370573 NPAS3Q8IXF0 933 aa4.86□□□□□ -1.63
MCF2-202ENST00000370573 NLRP3Q96P20 1036 aa4.86□□□□□ -1.63
MCF2-202ENST00000370573 XRN1Q8IZH2 1706 aaKnown RBP4.86□□□□□ -1.63
MCF2-202ENST00000370573 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.86□□□□□ -1.63
MCF2-202ENST00000370573 EVC2Q86UK5 1308 aa4.86□□□□□ -1.63
MCF2-202ENST00000370573 TMEM88BA6NKF7 163 aa4.85□□□□□ -1.63
MCF2-202ENST00000370573 PUS7Q96PZ0 661 aaKnown RBP4.85□□□□□ -1.63
MCF2-202ENST00000370573 PPP1R12CQ9BZL4 782 aa4.85□□□□□ -1.63
MCF2-202ENST00000370573 SENP3-EIF4A1A0A087X0R7 540 aa4.85□□□□□ -1.63
MCF2-202ENST00000370573 CDC14CA4D256 554 aa4.85□□□□□ -1.63
MCF2-202ENST00000370573 WASLO00401 505 aaPredicted RBP4.85□□□□□ -1.63
MCF2-202ENST00000370573 POU4F2Q12837 409 aa4.85□□□□□ -1.63
MCF2-202ENST00000370573 SND1Q7KZF4 910 aaKnown RBP eCLIP4.85□□□□□ -1.63
MCF2-202ENST00000370573 CNKSR1Q969H4 720 aa4.85□□□□□ -1.63
MCF2-202ENST00000370573 SLC12A5Q9H2X9 1139 aa4.85□□□□□ -1.63
MCF2-202ENST00000370573 PANK3Q9H999 370 aa4.85□□□□□ -1.63
MCF2-202ENST00000370573 PTCH1Q13635 1447 aa4.85□□□□□ -1.63
MCF2-202ENST00000370573 SLC35F4A4IF30 521 aa4.84□□□□□ -1.63
MCF2-202ENST00000370573 CSB-PGBD3P0DP91 1061 aa4.84□□□□□ -1.63
MCF2-202ENST00000370573 RNF144AP50876 292 aaPredicted RBP4.84□□□□□ -1.63
MCF2-202ENST00000370573 PDE4CQ08493 712 aa4.84□□□□□ -1.63
MCF2-202ENST00000370573 USP4Q13107 963 aa4.84□□□□□ -1.63
MCF2-202ENST00000370573 CCDC125Q86Z20 511 aa4.84□□□□□ -1.63
MCF2-202ENST00000370573 GPR161Q8N6U8 529 aaKnown RBP4.84□□□□□ -1.63
MCF2-202ENST00000370573 PLPP7Q8NBV4 271 aa4.84□□□□□ -1.63
MCF2-202ENST00000370573 UCN2Q96RP3 112 aa4.84□□□□□ -1.63
MCF2-202ENST00000370573 PALM3A6NDB9 673 aaPredicted RBP4.84□□□□□ -1.64
MCF2-202ENST00000370573 PATL2C9JE40 543 aaKnown RBP4.84□□□□□ -1.64
MCF2-202ENST00000370573 WIPF1O43516 503 aa4.84□□□□□ -1.64
MCF2-202ENST00000370573 CLN3Q13286 438 aa4.84□□□□□ -1.64
MCF2-202ENST00000370573 WWC1Q8IX03 1113 aa4.84□□□□□ -1.64
MCF2-202ENST00000370573 DEPDC4Q8N2C3 294 aa4.84□□□□□ -1.64
MCF2-202ENST00000370573 VWA5B2Q8N398 1253 aa4.84□□□□□ -1.64
MCF2-202ENST00000370573 PRR36Q9H6K5 1346 aa4.84□□□□□ -1.64
MCF2-202ENST00000370573 MYOM1P52179 1685 aa4.84□□□□□ -1.64
MCF2-202ENST00000370573 STRCP1A6NGW2 1772 aa4.83□□□□□ -1.64
MCF2-202ENST00000370573 IL2RAP01589 272 aa4.83□□□□□ -1.64
MCF2-202ENST00000370573 TMC1Q8TDI8 760 aa4.83□□□□□ -1.64
MCF2-202ENST00000370573 NUDT16Q96DE0 195 aaKnown RBP4.83□□□□□ -1.64
MCF2-202ENST00000370573 ALG2Q9H553 416 aa4.83□□□□□ -1.64
MCF2-202ENST00000370573 NWD1Q149M9 1564 aa4.83□□□□□ -1.64
MCF2-202ENST00000370573 SKIP12755 728 aa4.83□□□□□ -1.64
MCF2-202ENST00000370573 ITGA6P23229 1130 aa4.83□□□□□ -1.64
MCF2-202ENST00000370573 PHKA2P46019 1235 aa4.83□□□□□ -1.64
MCF2-202ENST00000370573 CENPCQ03188 943 aa4.83□□□□□ -1.64
MCF2-202ENST00000370573 CUEDC1Q9NWM3 386 aaPredicted RBP4.83□□□□□ -1.64
MCF2-202ENST00000370573 CABP1Q9NZU7 370 aa4.83□□□□□ -1.64
MCF2-202ENST00000370573 GNRH1P01148 92 aa4.82□□□□□ -1.64
MCF2-202ENST00000370573 LMOD1P29536 600 aaPredicted RBP4.82□□□□□ -1.64
MCF2-202ENST00000370573 GAS2L1Q99501 681 aaPredicted RBP4.82□□□□□ -1.64
MCF2-202ENST00000370573 VRTNQ9H8Y1 702 aa4.82□□□□□ -1.64
MCF2-202ENST00000370573 ADGRB2O60241 1585 aa4.82□□□□□ -1.64
MCF2-202ENST00000370573 ZNF335Q9H4Z2 1342 aaPredicted RBP4.82□□□□□ -1.64
MCF2-202ENST00000370573 RIPOR1Q6ZS17 1223 aa4.82□□□□□ -1.64
MCF2-202ENST00000370573 ESYT1Q9BSJ8 1104 aa4.82□□□□□ -1.64
MCF2-202ENST00000370573 ETNK1Q9HBU6 452 aa4.82□□□□□ -1.64
MCF2-202ENST00000370573 IGSF5Q9NSI5 407 aa4.82□□□□□ -1.64
MCF2-202ENST00000370573 TFIP11Q9UBB9 837 aaKnown RBP4.82□□□□□ -1.64
MCF2-202ENST00000370573 ATAD2Q6PL18 1390 aa4.82□□□□□ -1.64
MCF2-202ENST00000370573 CD163L1Q9NR16 1453 aa4.82□□□□□ -1.64
MCF2-202ENST00000370573 ANP32CO43423 234 aa4.81□□□□□ -1.64
MCF2-202ENST00000370573 SOX11P35716 441 aa4.81□□□□□ -1.64
MCF2-202ENST00000370573 CNGB1Q14028 1251 aaPredicted RBP4.81□□□□□ -1.64
MCF2-202ENST00000370573 GRIP2Q9C0E4 1043 aa4.81□□□□□ -1.64
MCF2-202ENST00000370573 PRKRIP1Q9H875 184 aaPredicted RBP4.81□□□□□ -1.64
MCF2-202ENST00000370573 USP35Q9P2H5 1018 aa4.81□□□□□ -1.64
MCF2-202ENST00000370573 NALCNQ8IZF0 1738 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms