RNA–Protein interactions for RNA: ENST00000369746.2

UBE3D-202, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 2,740 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-202ENST00000369746 LARGE2Q8N3Y3 721 aa6.23□□□□□ -1.41
UBE3D-202ENST00000369746 MSL3Q8N5Y2 521 aaKnown RBP6.23□□□□□ -1.41
UBE3D-202ENST00000369746 TSPYL1Q9H0U9 437 aa6.23□□□□□ -1.41
UBE3D-202ENST00000369746 DUOX1Q9NRD9 1551 aa6.23□□□□□ -1.41
UBE3D-202ENST00000369746 FOXN1O15353 648 aa6.23□□□□□ -1.41
UBE3D-202ENST00000369746 FAM161AQ3B820 660 aa6.23□□□□□ -1.41
UBE3D-202ENST00000369746 HELBQ8NG08 1087 aaPredicted RBP6.23□□□□□ -1.41
UBE3D-202ENST00000369746 TPX2Q9ULW0 747 aaKnown RBP6.23□□□□□ -1.41
UBE3D-202ENST00000369746 EDC4Q6P2E9 1401 aaKnown RBP6.23□□□□□ -1.41
UBE3D-202ENST00000369746 LMNB1P20700 586 aa6.22□□□□□ -1.41
UBE3D-202ENST00000369746 MNX1P50219 401 aaPredicted RBP6.22□□□□□ -1.41
UBE3D-202ENST00000369746 CACTIN-AS1Q8N1I8 211 aa6.22□□□□□ -1.41
UBE3D-202ENST00000369746 PDGFDQ9GZP0 370 aaPredicted RBP6.22□□□□□ -1.41
UBE3D-202ENST00000369746 VPS33BQ9H267 617 aa6.22□□□□□ -1.41
UBE3D-202ENST00000369746 NUB1Q9Y5A7 615 aa6.22□□□□□ -1.41
UBE3D-202ENST00000369746 KDRP35968 1356 aa6.22□□□□□ -1.41
UBE3D-202ENST00000369746 ITGB4P16144 1822 aa6.22□□□□□ -1.41
UBE3D-202ENST00000369746 A0A1W2PPC1 479 aa6.22□□□□□ -1.41
UBE3D-202ENST00000369746 PRR29P0C7W0 189 aa6.22□□□□□ -1.41
UBE3D-202ENST00000369746 NAALADL2Q58DX5 795 aa6.22□□□□□ -1.41
UBE3D-202ENST00000369746 NBPF15Q8N660 670 aa6.22□□□□□ -1.41
UBE3D-202ENST00000369746 AK7Q96M32 723 aa6.22□□□□□ -1.41
UBE3D-202ENST00000369746 PIM2Q9P1W9 311 aa6.22□□□□□ -1.41
UBE3D-202ENST00000369746 PUF60Q9UHX1 559 aaKnown RBP6.22□□□□□ -1.41
UBE3D-202ENST00000369746 KLF15Q9UIH9 416 aa6.22□□□□□ -1.41
UBE3D-202ENST00000369746 PRR12Q9ULL5 1215 aa6.22□□□□□ -1.41
UBE3D-202ENST00000369746 CFAP69A5D8W1 941 aa6.21□□□□□ -1.41
UBE3D-202ENST00000369746 TMEM88BA6NKF7 163 aa6.21□□□□□ -1.41
UBE3D-202ENST00000369746 CALRP27797 417 aaKnown RBP6.21□□□□□ -1.41
UBE3D-202ENST00000369746 PUS10Q3MIT2 529 aaKnown RBP6.21□□□□□ -1.41
UBE3D-202ENST00000369746 FAM182BQ5T319 152 aa6.21□□□□□ -1.41
UBE3D-202ENST00000369746 CCNL1Q9UK58 526 aaPredicted RBP6.21□□□□□ -1.41
UBE3D-202ENST00000369746 FBXO9Q9UK97 447 aaPredicted RBP6.21□□□□□ -1.41
UBE3D-202ENST00000369746 LIG1P18858 919 aa6.21□□□□□ -1.42
UBE3D-202ENST00000369746 TDO2P48775 406 aa6.21□□□□□ -1.42
UBE3D-202ENST00000369746 ZCRB1Q8TBF4 217 aaKnown RBP6.21□□□□□ -1.42
UBE3D-202ENST00000369746 MAP3K20Q9NYL2 800 aaKnown RBP6.21□□□□□ -1.42
UBE3D-202ENST00000369746 CDHR2Q9BYE9 1310 aa6.21□□□□□ -1.42
UBE3D-202ENST00000369746 ZNF16P17020 682 aaPredicted RBP6.2□□□□□ -1.42
UBE3D-202ENST00000369746 PPP4CP60510 307 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 MTA1Q13330 715 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 C4orf46Q504U0 113 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 C9orf131Q5VYM1 1079 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 ANKRD23Q86SG2 305 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 CCDC146Q8IYE0 955 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 RIC1Q4ADV7 1423 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 ZBED9Q6R2W3 1325 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 PCDH11XQ9BZA7 1347 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 PCDH11YQ9BZA8 1340 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 TRIM66O15016 1216 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 CSB-PGBD3P0DP91 1061 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 CHRNA2Q15822 529 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 DPY19L2Q6NUT2 758 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 PNMA8AQ86V59 439 aaPredicted RBP6.2□□□□□ -1.42
UBE3D-202ENST00000369746 AMOTL1Q8IY63 956 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 CFHR5Q9BXR6 569 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 COMMD10Q9Y6G5 202 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 TONSLQ96HA7 1378 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 RNF123Q5XPI4 1314 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 TTC21BQ7Z4L5 1316 aa6.2□□□□□ -1.42
UBE3D-202ENST00000369746 ZSCAN20P17040 1043 aaPredicted RBP6.19□□□□□ -1.42
UBE3D-202ENST00000369746 NEXNQ0ZGT2 675 aa6.19□□□□□ -1.42
UBE3D-202ENST00000369746 DALRD3Q5D0E6 543 aaKnown RBP6.19□□□□□ -1.42
UBE3D-202ENST00000369746 BORCS6Q96GS4 357 aa6.19□□□□□ -1.42
UBE3D-202ENST00000369746 CDK19Q9BWU1 502 aa6.19□□□□□ -1.42
UBE3D-202ENST00000369746 MKRN1Q9UHC7 482 aaKnown RBP6.19□□□□□ -1.42
UBE3D-202ENST00000369746 hCG_2014768A0A024R1R8 64 aa6.19□□□□□ -1.42
UBE3D-202ENST00000369746 ZC3H6P61129 1189 aaKnown RBP6.19□□□□□ -1.42
UBE3D-202ENST00000369746 NBPF6Q5VWK0 638 aa6.19□□□□□ -1.42
UBE3D-202ENST00000369746 EP400NLQ6ZTU2 488 aa6.19□□□□□ -1.42
UBE3D-202ENST00000369746 NBPF5PQ86XG9 351 aaPredicted RBP6.19□□□□□ -1.42
UBE3D-202ENST00000369746 IP6K1Q92551 441 aa6.19□□□□□ -1.42
UBE3D-202ENST00000369746 SPACA7Q96KW9 195 aa6.19□□□□□ -1.42
UBE3D-202ENST00000369746 NBPF4Q96M43 638 aa6.19□□□□□ -1.42
UBE3D-202ENST00000369746 CCDC85AQ96PX6 553 aaPredicted RBP6.19□□□□□ -1.42
UBE3D-202ENST00000369746 NMRK2Q9NPI5 230 aa6.19□□□□□ -1.42
UBE3D-202ENST00000369746 FSD2A1L4K1 749 aa6.19□□□□□ -1.42
UBE3D-202ENST00000369746 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.19□□□□□ -1.42
UBE3D-202ENST00000369746 CCDC94Q9BW85 323 aaPredicted RBP6.19□□□□□ -1.42
UBE3D-202ENST00000369746 LRRC27Q9C0I9 530 aa6.19□□□□□ -1.42
UBE3D-202ENST00000369746 PALLDQ8WX93 1383 aa6.18□□□□□ -1.42
UBE3D-202ENST00000369746 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.18□□□□□ -1.42
UBE3D-202ENST00000369746 DYNC1I1O14576 645 aa6.18□□□□□ -1.42
UBE3D-202ENST00000369746 NBPF10Q6P3W6 841 aaKnown RBP6.18□□□□□ -1.42
UBE3D-202ENST00000369746 CHMP4CQ96CF2 233 aa6.18□□□□□ -1.42
UBE3D-202ENST00000369746 IRF2BPLQ9H1B7 796 aa6.18□□□□□ -1.42
UBE3D-202ENST00000369746 ZNF609O15014 1411 aa6.18□□□□□ -1.42
UBE3D-202ENST00000369746 DNTTIP2Q5QJE6 756 aaKnown RBP6.18□□□□□ -1.42
UBE3D-202ENST00000369746 KRI1Q8N9T8 703 aaKnown RBP6.18□□□□□ -1.42
UBE3D-202ENST00000369746 C1orf131Q8NDD1 294 aaKnown RBP6.18□□□□□ -1.42
UBE3D-202ENST00000369746 RNF217Q8TC41 542 aa6.18□□□□□ -1.42
UBE3D-202ENST00000369746 ESPNB1AK53 854 aa6.17□□□□□ -1.42
UBE3D-202ENST00000369746 A0A1W2PP64 1363 aa6.17□□□□□ -1.42
UBE3D-202ENST00000369746 IPO8O15397 1037 aaKnown RBP6.17□□□□□ -1.42
UBE3D-202ENST00000369746 OFD1O75665 1012 aa6.17□□□□□ -1.42
UBE3D-202ENST00000369746 SETDB1Q15047 1291 aa6.17□□□□□ -1.42
UBE3D-202ENST00000369746 PTPROQ16827 1216 aa6.17□□□□□ -1.42
UBE3D-202ENST00000369746 LNPKQ9C0E8 428 aa6.17□□□□□ -1.42
UBE3D-202ENST00000369746 EVC2Q86UK5 1308 aa6.16□□□□□ -1.42
UBE3D-202ENST00000369746 KCNA3P22001 575 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms