RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 AOC2O75106 756 aa18.27■□□□□ 0.52
VPS29-201ENST00000360579 GMPSP49915 693 aaPredicted RBP18.27■□□□□ 0.52
VPS29-201ENST00000360579 BRPF1P55201 1214 aaPredicted RBP18.27■□□□□ 0.52
VPS29-201ENST00000360579 TNIP1Q15025 636 aa18.27■□□□□ 0.52
VPS29-201ENST00000360579 DPP8Q6V1X1 898 aaPredicted RBP18.27■□□□□ 0.52
VPS29-201ENST00000360579 PNNQ9H307 717 aaKnown RBP18.27■□□□□ 0.52
VPS29-201ENST00000360579 PGAP2Q9UHJ9 254 aa18.27■□□□□ 0.52
VPS29-201ENST00000360579 ABCC4O15439 1325 aa18.26■□□□□ 0.51
VPS29-201ENST00000360579 NFE2L2Q16236 605 aa18.26■□□□□ 0.51
VPS29-201ENST00000360579 CIAPIN1Q6FI81 312 aa18.26■□□□□ 0.51
VPS29-201ENST00000360579 SP8Q8IXZ3 490 aa18.26■□□□□ 0.51
VPS29-201ENST00000360579 BCL2L13Q9BXK5 485 aa18.26■□□□□ 0.51
VPS29-201ENST00000360579 KIAA2012Q0VF49 1180 aa18.25■□□□□ 0.51
VPS29-201ENST00000360579 CDC37L1Q7L3B6 337 aa18.25■□□□□ 0.51
VPS29-201ENST00000360579 SLC51AQ86UW1 340 aa18.25■□□□□ 0.51
VPS29-201ENST00000360579 MPNDQ8N594 471 aa18.25■□□□□ 0.51
VPS29-201ENST00000360579 GLIS2Q9BZE0 524 aaPredicted RBP18.25■□□□□ 0.51
VPS29-201ENST00000360579 TSKSQ9UJT2 592 aa18.25■□□□□ 0.51
VPS29-201ENST00000360579 HSP90AB3PQ58FF7 597 aa18.24■□□□□ 0.51
VPS29-201ENST00000360579 PLEKHF1Q96S99 279 aa18.24■□□□□ 0.51
VPS29-201ENST00000360579 MAPK8IP3Q9UPT6 1336 aa18.23■□□□□ 0.51
VPS29-201ENST00000360579 DDX46Q7L014 1031 aaKnown RBP18.23■□□□□ 0.51
VPS29-201ENST00000360579 TMC4Q7Z404 712 aa18.23■□□□□ 0.51
VPS29-201ENST00000360579 H7C1D1 291 aa18.22■□□□□ 0.51
VPS29-201ENST00000360579 NOGQ13253 232 aa18.22■□□□□ 0.51
VPS29-201ENST00000360579 THUMPD2Q9BTF0 503 aaKnown RBP18.22■□□□□ 0.51
VPS29-201ENST00000360579 MCOLN1Q9GZU1 580 aa18.22■□□□□ 0.51
VPS29-201ENST00000360579 ZNF408Q9H9D4 720 aa18.22■□□□□ 0.51
VPS29-201ENST00000360579 TSPYL4Q9UJ04 414 aa18.22■□□□□ 0.51
VPS29-201ENST00000360579 RAD17O75943 681 aa18.21■□□□□ 0.51
VPS29-201ENST00000360579 MYCNP04198 464 aaPredicted RBP18.21■□□□□ 0.51
VPS29-201ENST00000360579 GRAPQ13588 217 aa18.21■□□□□ 0.51
VPS29-201ENST00000360579 SAMD1Q6SPF0 538 aaPredicted RBP18.21■□□□□ 0.51
VPS29-201ENST00000360579 LRP10Q7Z4F1 713 aa18.21■□□□□ 0.51
VPS29-201ENST00000360579 GRAPLQ8TC17 118 aaPredicted RBP18.21■□□□□ 0.51
VPS29-201ENST00000360579 CFAP44Q96MT7 982 aa18.21■□□□□ 0.51
VPS29-201ENST00000360579 BABAM1Q9NWV8 329 aa18.21■□□□□ 0.51
VPS29-201ENST00000360579 CNOT7Q9UIV1 285 aaKnown RBP18.21■□□□□ 0.51
VPS29-201ENST00000360579 EIF2S2P20042 333 aaKnown RBP18.2■□□□□ 0.5
VPS29-201ENST00000360579 DSG3P32926 999 aa18.2■□□□□ 0.5
VPS29-201ENST00000360579 HIRAP54198 1017 aaPredicted RBP18.2■□□□□ 0.5
VPS29-201ENST00000360579 PDIA6Q15084 440 aa18.2■□□□□ 0.5
VPS29-201ENST00000360579 DLG5Q8TDM6 1919 aa18.19■□□□□ 0.5
VPS29-201ENST00000360579 NLRP10Q86W26 655 aa18.19■□□□□ 0.5
VPS29-201ENST00000360579 TRPM4Q8TD43 1214 aa18.19■□□□□ 0.5
VPS29-201ENST00000360579 TRMT112Q9UI30 125 aaKnown RBP18.19■□□□□ 0.5
VPS29-201ENST00000360579 SH3TC1Q8TE82 1336 aa18.19■□□□□ 0.5
VPS29-201ENST00000360579 HCLS1P14317 486 aaPredicted RBP18.18■□□□□ 0.5
VPS29-201ENST00000360579 HUNKP57058 714 aa18.18■□□□□ 0.5
VPS29-201ENST00000360579 DGKZQ13574 1117 aa18.18■□□□□ 0.5
VPS29-201ENST00000360579 MICALL2Q8IY33 904 aa18.18■□□□□ 0.5
VPS29-201ENST00000360579 DPF2Q92785 391 aa18.18■□□□□ 0.5
VPS29-201ENST00000360579 COPS6Q7L5N1 327 aa18.17■□□□□ 0.5
VPS29-201ENST00000360579 YDJCA8MPS7 323 aa18.16■□□□□ 0.5
VPS29-201ENST00000360579 TCIRG1Q13488 830 aa18.16■□□□□ 0.5
VPS29-201ENST00000360579 PROSER3Q2NL68 480 aa18.16■□□□□ 0.5
VPS29-201ENST00000360579 USP48Q86UV5 1035 aa18.16■□□□□ 0.5
VPS29-201ENST00000360579 ANXA1P04083 346 aa18.15■□□□□ 0.5
VPS29-201ENST00000360579 RPS12P25398 132 aaKnown RBP18.15■□□□□ 0.5
VPS29-201ENST00000360579 LMOD3Q0VAK6 560 aa18.15■□□□□ 0.5
VPS29-201ENST00000360579 AIMP1Q12904 312 aaKnown RBP18.15■□□□□ 0.5
VPS29-201ENST00000360579 WASHC4Q2M389 1173 aa18.15■□□□□ 0.5
VPS29-201ENST00000360579 XAGE3Q8WTP9 111 aa18.15■□□□□ 0.5
VPS29-201ENST00000360579 CCDC102AQ96A19 550 aa18.15■□□□□ 0.5
VPS29-201ENST00000360579 FOXD4L1Q9NU39 408 aa18.15■□□□□ 0.5
VPS29-201ENST00000360579 SAGE1Q9NXZ1 904 aa18.15■□□□□ 0.5
VPS29-201ENST00000360579 PCDH10Q9P2E7 1040 aa18.15■□□□□ 0.5
VPS29-201ENST00000360579 ANKRD36CQ5JPF3 1778 aa18.14■□□□□ 0.5
VPS29-201ENST00000360579 RGMBQ6NW40 437 aa18.14■□□□□ 0.49
VPS29-201ENST00000360579 KRT26Q7Z3Y9 468 aa18.14■□□□□ 0.49
VPS29-201ENST00000360579 C2orf69Q8N8R5 385 aa18.14■□□□□ 0.49
VPS29-201ENST00000360579 RIPK4P57078 832 aa18.13■□□□□ 0.49
VPS29-201ENST00000360579 DCPSQ96C86 337 aaKnown RBP18.13■□□□□ 0.49
VPS29-201ENST00000360579 GBA2Q9HCG7 927 aaPredicted RBP18.13■□□□□ 0.49
VPS29-201ENST00000360579 ZBTB12Q9Y330 459 aaPredicted RBP18.13■□□□□ 0.49
VPS29-201ENST00000360579 SHTN1A0MZ66 631 aa18.12■□□□□ 0.49
VPS29-201ENST00000360579 PSMD14O00487 310 aa18.12■□□□□ 0.49
VPS29-201ENST00000360579 SAMD7Q7Z3H4 446 aa18.12■□□□□ 0.49
VPS29-201ENST00000360579 EYA3Q99504 573 aa18.12■□□□□ 0.49
VPS29-201ENST00000360579 NSFL1CQ9UNZ2 370 aaKnown RBP18.12■□□□□ 0.49
VPS29-201ENST00000360579 DUOX1Q9NRD9 1551 aa18.12■□□□□ 0.49
VPS29-201ENST00000360579 TBC1D10BQ4KMP7 808 aaPredicted RBP18.11■□□□□ 0.49
VPS29-201ENST00000360579 ZIC5Q96T25 663 aa18.11■□□□□ 0.49
VPS29-201ENST00000360579 DBNDD1Q9H9R9 158 aa18.11■□□□□ 0.49
VPS29-201ENST00000360579 LAMB2P55268 1798 aa18.11■□□□□ 0.49
VPS29-201ENST00000360579 CASP8AP2Q9UKL3 1982 aa18.11■□□□□ 0.49
VPS29-201ENST00000360579 LRRC37AA6NMS7 1700 aa18.1■□□□□ 0.49
VPS29-201ENST00000360579 FAM155AB1AL88 458 aaPredicted RBP18.1■□□□□ 0.49
VPS29-201ENST00000360579 C6orf229H3BNL8 230 aa18.1■□□□□ 0.49
VPS29-201ENST00000360579 ZNF157P51786 506 aaPredicted RBP18.1■□□□□ 0.49
VPS29-201ENST00000360579 SF3B3Q15393 1217 aaKnown RBP18.1■□□□□ 0.49
VPS29-201ENST00000360579 NECTIN2Q92692 538 aa18.1■□□□□ 0.49
VPS29-201ENST00000360579 PLBD2Q8NHP8 589 aa18.09■□□□□ 0.49
VPS29-201ENST00000360579 RIMBP2O15034 1052 aa18.08■□□□□ 0.48
VPS29-201ENST00000360579 ECE2O60344 883 aa18.08■□□□□ 0.48
VPS29-201ENST00000360579 KIF23Q02241 960 aaPredicted RBP18.08■□□□□ 0.48
VPS29-201ENST00000360579 SULF1Q8IWU6 871 aa18.08■□□□□ 0.48
VPS29-201ENST00000360579 REM2Q8IYK8 340 aaPredicted RBP18.08■□□□□ 0.48
VPS29-201ENST00000360579 CELF1Q92879 486 aaKnown RBP18.08■□□□□ 0.48
VPS29-201ENST00000360579 POLLQ9UGP5 575 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms