RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 WDR46O15213 610 aaKnown RBP11.14□□□□□ -0.63
CHD3-202ENST00000358181 DAPK3O43293 454 aa11.14□□□□□ -0.63
CHD3-202ENST00000358181 NME9Q86XW9 330 aa11.14□□□□□ -0.63
CHD3-202ENST00000358181 PARD3BQ8TEW8 1205 aa11.14□□□□□ -0.63
CHD3-202ENST00000358181 SEPT8Q92599 483 aa11.14□□□□□ -0.63
CHD3-202ENST00000358181 SELENOSQ9BQE4 189 aa11.14□□□□□ -0.63
CHD3-202ENST00000358181 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.14□□□□□ -0.63
CHD3-202ENST00000358181 V9GYY5 206 aaPredicted RBP11.14□□□□□ -0.63
CHD3-202ENST00000358181 TSPY2A6NKD2 308 aa11.14□□□□□ -0.63
CHD3-202ENST00000358181 URI1O94763 535 aaPredicted RBP11.14□□□□□ -0.63
CHD3-202ENST00000358181 KIFC2Q96AC6 838 aa11.14□□□□□ -0.63
CHD3-202ENST00000358181 SLC9A5Q14940 896 aa11.14□□□□□ -0.63
CHD3-202ENST00000358181 ACBD5Q5T8D3 534 aaPredicted RBP11.14□□□□□ -0.63
CHD3-202ENST00000358181 MICALCLQ6ZW33 695 aa11.14□□□□□ -0.63
CHD3-202ENST00000358181 DDX46Q7L014 1031 aaKnown RBP11.14□□□□□ -0.63
CHD3-202ENST00000358181 TACC3Q9Y6A5 838 aa11.14□□□□□ -0.63
CHD3-202ENST00000358181 KAT6BQ8WYB5 2073 aa11.14□□□□□ -0.63
CHD3-202ENST00000358181 FAM170AA1A519 330 aa11.13□□□□□ -0.63
CHD3-202ENST00000358181 FBXW4P57775 412 aa11.13□□□□□ -0.63
CHD3-202ENST00000358181 CATIPQ7Z7H3 387 aa11.13□□□□□ -0.63
CHD3-202ENST00000358181 SRCIN1Q9C0H9 1055 aa11.13□□□□□ -0.63
CHD3-202ENST00000358181 NUP62CLQ9H1M0 184 aa11.13□□□□□ -0.63
CHD3-202ENST00000358181 RNF216Q9NWF9 866 aaPredicted RBP11.13□□□□□ -0.63
CHD3-202ENST00000358181 PSPC1Q8WXF1 523 aaKnown RBP11.13□□□□□ -0.63
CHD3-202ENST00000358181 CCDC114Q96M63 670 aa11.13□□□□□ -0.63
CHD3-202ENST00000358181 CC2D2AQ9P2K1 1620 aa11.13□□□□□ -0.63
CHD3-202ENST00000358181 IQCA1Q86XH1 822 aa11.13□□□□□ -0.63
CHD3-202ENST00000358181 CCT2P78371 535 aaKnown RBP11.13□□□□□ -0.63
CHD3-202ENST00000358181 SPECC1LQ69YQ0 1117 aa11.13□□□□□ -0.63
CHD3-202ENST00000358181 FOXD4Q12950 439 aaPredicted RBP11.13□□□□□ -0.63
CHD3-202ENST00000358181 IMPG2Q9BZV3 1241 aa11.13□□□□□ -0.63
CHD3-202ENST00000358181 IFIT3O14879 490 aaKnown RBP11.13□□□□□ -0.63
CHD3-202ENST00000358181 TRAK2O60296 914 aa11.12□□□□□ -0.63
CHD3-202ENST00000358181 KIF4AO95239 1232 aa11.12□□□□□ -0.63
CHD3-202ENST00000358181 IFRD2Q12894 506 aaPredicted RBP11.12□□□□□ -0.63
CHD3-202ENST00000358181 PDE1CQ14123 709 aaPredicted RBP11.12□□□□□ -0.63
CHD3-202ENST00000358181 MTERF4Q7Z6M4 381 aaKnown RBP11.12□□□□□ -0.63
CHD3-202ENST00000358181 OGFOD1Q8N543 542 aa11.12□□□□□ -0.63
CHD3-202ENST00000358181 TRMT1Q9NXH9 659 aaKnown RBP11.12□□□□□ -0.63
CHD3-202ENST00000358181 MAP9Q49MG5 647 aa11.12□□□□□ -0.63
CHD3-202ENST00000358181 SMC6Q96SB8 1091 aa11.12□□□□□ -0.63
CHD3-202ENST00000358181 TTF1Q15361 905 aaPredicted RBP11.12□□□□□ -0.63
CHD3-202ENST00000358181 MSL1Q68DK7 614 aa11.12□□□□□ -0.63
CHD3-202ENST00000358181 FERMT3Q86UX7 667 aa11.12□□□□□ -0.63
CHD3-202ENST00000358181 CNGA1P29973 690 aa11.12□□□□□ -0.63
CHD3-202ENST00000358181 CHRNA2Q15822 529 aa11.12□□□□□ -0.63
CHD3-202ENST00000358181 GOLGA6L9A6NEM1 432 aa11.12□□□□□ -0.63
CHD3-202ENST00000358181 CEP120Q8N960 986 aa11.12□□□□□ -0.63
CHD3-202ENST00000358181 MIPOL1Q8TD10 442 aa11.12□□□□□ -0.63
CHD3-202ENST00000358181 ZSWIM4Q9H7M6 989 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 BZW2Q9Y6E2 419 aaKnown RBP11.11□□□□□ -0.63
CHD3-202ENST00000358181 NSD3Q9BZ95 1437 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 GOLGA6CA6NDK9 693 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 GOLGA6BA6NDN3 693 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 SPDYE2BA6NHP3 402 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 E7EVH7 732 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 BIN1O00499 593 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 MAFGO15525 162 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 YEATS4O95619 227 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 GOLGA6DP0CG33 693 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 SPDYE6P0CI01 402 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 CEP112Q8N8E3 955 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 CASKIN1Q8WXD9 1431 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 GOLGA6AQ9NYA3 693 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 TOP1P11387 765 aaKnown RBP11.11□□□□□ -0.63
CHD3-202ENST00000358181 KRT5P13647 590 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 CDR2Q01850 454 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 MAP3K12Q12852 859 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 UBXN4Q92575 508 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 BOLA2Q9H3K6 86 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 CCDC83Q8IWF9 413 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 CCDC155Q8N6L0 562 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 FRMD4BQ9Y2L6 1034 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 STK24Q9Y6E0 443 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 BACH1O14867 736 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 KIF5BP33176 963 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 TMEM57Q8N5G2 664 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 ARHGEF11O15085 1522 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 HEATR3Q7Z4Q2 680 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 CCDC25Q86WR0 208 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 RNF169Q8NCN4 708 aa11.11□□□□□ -0.63
CHD3-202ENST00000358181 GNAT3A8MTJ3 354 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 LIMCH1Q9UPQ0 1083 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 TSPY3P0CV98 308 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 TSPY8P0CW00 308 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 CNNM3Q8NE01 707 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 SMARCC2Q8TAQ2 1214 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 RNF217Q8TC41 542 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 ABCF3Q9NUQ8 709 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 EMILIN1Q9Y6C2 1016 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 FAM160A1Q05DH4 1040 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 SKA2Q8WVK7 121 aaPredicted RBP11.1□□□□□ -0.63
CHD3-202ENST00000358181 C8orf37Q96NL8 207 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 KIF9Q9HAQ2 790 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 RBM28Q9NW13 759 aaKnown RBP11.1□□□□□ -0.63
CHD3-202ENST00000358181 AGTPBP1Q9UPW5 1226 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 ZBTB33Q86T24 672 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 GOLGA1Q92805 767 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 CCDC8Q9H0W5 538 aaPredicted RBP11.1□□□□□ -0.63
CHD3-202ENST00000358181 IQSEC3Q9UPP2 1182 aaPredicted RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms