RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 RGPD3A6NKT7 1758 aaPredicted RBP12.27□□□□□ -0.44
SYNE1-203ENST00000354674 RGPD4Q7Z3J3 1758 aa12.27□□□□□ -0.44
SYNE1-203ENST00000354674 TNS1Q9HBL0 1735 aaKnown RBP12.27□□□□□ -0.44
SYNE1-203ENST00000354674 TRIM37O94972 964 aa12.27□□□□□ -0.44
SYNE1-203ENST00000354674 CAMTA2O94983 1202 aa12.27□□□□□ -0.44
SYNE1-203ENST00000354674 HSP90AB3PQ58FF7 597 aa12.27□□□□□ -0.44
SYNE1-203ENST00000354674 SLC27A3Q5K4L6 730 aa12.27□□□□□ -0.44
SYNE1-203ENST00000354674 SCN7AQ01118 1682 aa12.27□□□□□ -0.45
SYNE1-203ENST00000354674 KCNJ4P48050 445 aa12.27□□□□□ -0.45
SYNE1-203ENST00000354674 KCNQ4P56696 695 aa12.27□□□□□ -0.45
SYNE1-203ENST00000354674 RPS6KA4O75676 772 aa12.26□□□□□ -0.45
SYNE1-203ENST00000354674 LRRC4BQ9NT99 713 aa12.26□□□□□ -0.45
SYNE1-203ENST00000354674 A0A087WZG4 1122 aa12.26□□□□□ -0.45
SYNE1-203ENST00000354674 PPP1R42Q7Z4L9 355 aa12.26□□□□□ -0.45
SYNE1-203ENST00000354674 ZNF34Q8IZ26 560 aa12.26□□□□□ -0.45
SYNE1-203ENST00000354674 ZNF330Q9Y3S2 320 aaPredicted RBP12.26□□□□□ -0.45
SYNE1-203ENST00000354674 PLSCR1O15162 318 aa12.26□□□□□ -0.45
SYNE1-203ENST00000354674 RABL6Q3YEC7 729 aaPredicted RBP12.26□□□□□ -0.45
SYNE1-203ENST00000354674 TBC1D2BQ9UPU7 963 aa12.26□□□□□ -0.45
SYNE1-203ENST00000354674 CHD1LQ86WJ1 897 aa12.25□□□□□ -0.45
SYNE1-203ENST00000354674 CHMP5Q9NZZ3 219 aa12.25□□□□□ -0.45
SYNE1-203ENST00000354674 BICC1Q9H694 974 aaKnown RBP12.25□□□□□ -0.45
SYNE1-203ENST00000354674 NLRP10Q86W26 655 aa12.24□□□□□ -0.45
SYNE1-203ENST00000354674 PCCAP05165 728 aaPredicted RBP12.24□□□□□ -0.45
SYNE1-203ENST00000354674 EPHA10Q5JZY3 1008 aa12.24□□□□□ -0.45
SYNE1-203ENST00000354674 CLEC4GQ6UXB4 293 aa12.24□□□□□ -0.45
SYNE1-203ENST00000354674 UBE3BQ7Z3V4 1068 aa12.24□□□□□ -0.45
SYNE1-203ENST00000354674 PROM2Q8N271 834 aa12.24□□□□□ -0.45
SYNE1-203ENST00000354674 C17orf53Q8N3J3 647 aaPredicted RBP12.24□□□□□ -0.45
SYNE1-203ENST00000354674 UBR3Q6ZT12 1888 aa12.24□□□□□ -0.45
SYNE1-203ENST00000354674 HMGB2P26583 209 aaKnown RBP12.24□□□□□ -0.45
SYNE1-203ENST00000354674 PLA2G12BQ9BX93 195 aa12.24□□□□□ -0.45
SYNE1-203ENST00000354674 C4AP0C0L4 1744 aa12.23□□□□□ -0.45
SYNE1-203ENST00000354674 SRGAP3O43295 1099 aa12.23□□□□□ -0.45
SYNE1-203ENST00000354674 FOXO4P98177 505 aa12.23□□□□□ -0.45
SYNE1-203ENST00000354674 ZBTB38Q8NAP3 1195 aaPredicted RBP12.23□□□□□ -0.45
SYNE1-203ENST00000354674 RNF214Q8ND24 703 aa12.23□□□□□ -0.45
SYNE1-203ENST00000354674 TNPO1Q92973 898 aaKnown RBP12.23□□□□□ -0.45
SYNE1-203ENST00000354674 UBN2Q6ZU65 1347 aa12.23□□□□□ -0.45
SYNE1-203ENST00000354674 CDHR2Q9BYE9 1310 aa12.23□□□□□ -0.45
SYNE1-203ENST00000354674 CCDC173Q0VFZ6 552 aa12.23□□□□□ -0.45
SYNE1-203ENST00000354674 UTP14CQ5TAP6 766 aaKnown RBP12.23□□□□□ -0.45
SYNE1-203ENST00000354674 ANKRD45Q5TZF3 282 aa12.23□□□□□ -0.45
SYNE1-203ENST00000354674 AMIGO3Q86WK7 504 aa12.22□□□□□ -0.45
SYNE1-203ENST00000354674 NARFQ9UHQ1 456 aa12.22□□□□□ -0.45
SYNE1-203ENST00000354674 GNPATO15228 680 aa12.22□□□□□ -0.45
SYNE1-203ENST00000354674 RTCBQ9Y3I0 505 aaKnown RBP12.22□□□□□ -0.45
SYNE1-203ENST00000354674 DDX49Q9Y6V7 483 aaKnown RBP12.22□□□□□ -0.45
SYNE1-203ENST00000354674 RAB11FIP3O75154 756 aa12.21□□□□□ -0.45
SYNE1-203ENST00000354674 RFX5P48382 616 aaPredicted RBP12.21□□□□□ -0.45
SYNE1-203ENST00000354674 TXNRD1Q16881 649 aa12.21□□□□□ -0.45
SYNE1-203ENST00000354674 BCL2L12Q9HB09 334 aa12.21□□□□□ -0.45
SYNE1-203ENST00000354674 COL24A1Q17RW2 1714 aa12.21□□□□□ -0.45
SYNE1-203ENST00000354674 DYNC1I1O14576 645 aa12.21□□□□□ -0.46
SYNE1-203ENST00000354674 PTMAP06454 111 aaKnown RBP12.21□□□□□ -0.46
SYNE1-203ENST00000354674 ADRA2BP18089 450 aa12.21□□□□□ -0.46
SYNE1-203ENST00000354674 U2AF2P26368 475 aaKnown RBP eCLIP12.21□□□□□ -0.46
SYNE1-203ENST00000354674 LNPKQ9C0E8 428 aa12.21□□□□□ -0.46
SYNE1-203ENST00000354674 LAMB2P55268 1798 aa12.2□□□□□ -0.46
SYNE1-203ENST00000354674 PARP10Q53GL7 1025 aa12.2□□□□□ -0.46
SYNE1-203ENST00000354674 EXOC6BQ9Y2D4 811 aa12.2□□□□□ -0.46
SYNE1-203ENST00000354674 ZNF652Q9Y2D9 606 aa12.2□□□□□ -0.46
SYNE1-203ENST00000354674 DDX11L8A8MPP1 907 aa12.2□□□□□ -0.46
SYNE1-203ENST00000354674 ARHGEF1Q92888 912 aaKnown RBP12.2□□□□□ -0.46
SYNE1-203ENST00000354674 ERICH4A6NGS2 130 aa12.2□□□□□ -0.46
SYNE1-203ENST00000354674 GPTP24298 496 aa12.2□□□□□ -0.46
SYNE1-203ENST00000354674 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.2□□□□□ -0.46
SYNE1-203ENST00000354674 APBA3O96018 575 aa12.19□□□□□ -0.46
SYNE1-203ENST00000354674 CSF1RP07333 972 aa12.19□□□□□ -0.46
SYNE1-203ENST00000354674 IRX5P78411 483 aaPredicted RBP12.19□□□□□ -0.46
SYNE1-203ENST00000354674 HSP90AB4PQ58FF6 505 aa12.19□□□□□ -0.46
SYNE1-203ENST00000354674 CAVIN1Q6NZI2 390 aaKnown RBP12.19□□□□□ -0.46
SYNE1-203ENST00000354674 AK7Q96M32 723 aa12.19□□□□□ -0.46
SYNE1-203ENST00000354674 COPRSQ9NQ92 184 aa12.19□□□□□ -0.46
SYNE1-203ENST00000354674 SUSD4Q5VX71 490 aa12.19□□□□□ -0.46
SYNE1-203ENST00000354674 FAM89AQ96GI7 184 aa12.19□□□□□ -0.46
SYNE1-203ENST00000354674 LRRCC1Q9C099 1032 aa12.19□□□□□ -0.46
SYNE1-203ENST00000354674 DDX60Q8IY21 1712 aaKnown RBP12.19□□□□□ -0.46
SYNE1-203ENST00000354674 SALL3Q9BXA9 1300 aa12.18□□□□□ -0.46
SYNE1-203ENST00000354674 USP42Q9H9J4 1324 aaKnown RBP12.18□□□□□ -0.46
SYNE1-203ENST00000354674 SURF6O75683 361 aaKnown RBP12.18□□□□□ -0.46
SYNE1-203ENST00000354674 ZNF710Q8N1W2 664 aa12.18□□□□□ -0.46
SYNE1-203ENST00000354674 CHAMP1Q96JM3 812 aa12.18□□□□□ -0.46
SYNE1-203ENST00000354674 TBC1D32Q96NH3 1257 aa12.18□□□□□ -0.46
SYNE1-203ENST00000354674 MYH3P11055 1940 aa12.18□□□□□ -0.46
SYNE1-203ENST00000354674 NTSR2O95665 410 aa12.18□□□□□ -0.46
SYNE1-203ENST00000354674 SSFA2P28290 1259 aa12.18□□□□□ -0.46
SYNE1-203ENST00000354674 PTPN12Q05209 780 aaKnown RBP12.18□□□□□ -0.46
SYNE1-203ENST00000354674 TRAPPC3LQ5T215 181 aa12.18□□□□□ -0.46
SYNE1-203ENST00000354674 LMBR1LQ6UX01 489 aa12.18□□□□□ -0.46
SYNE1-203ENST00000354674 SMIM5Q71RC9 77 aa12.18□□□□□ -0.46
SYNE1-203ENST00000354674 HSCBQ8IWL3 235 aa12.18□□□□□ -0.46
SYNE1-203ENST00000354674 AKT1S1Q96B36 256 aa12.18□□□□□ -0.46
SYNE1-203ENST00000354674 TRMT112Q9UI30 125 aaKnown RBP12.18□□□□□ -0.46
SYNE1-203ENST00000354674 SMARCA5O60264 1052 aaPredicted RBP12.17□□□□□ -0.46
SYNE1-203ENST00000354674 FOXD4L5Q5VV16 416 aaPredicted RBP12.17□□□□□ -0.46
SYNE1-203ENST00000354674 USPL1Q5W0Q7 1092 aa12.17□□□□□ -0.46
SYNE1-203ENST00000354674 PLEKHM2Q8IWE5 1019 aa12.17□□□□□ -0.46
SYNE1-203ENST00000354674 SYNE4Q8N205 404 aa12.17□□□□□ -0.46
SYNE1-203ENST00000354674 FOXD4L4Q8WXT5 416 aaPredicted RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms