RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 TTLL7Q6ZT98 887 aa14.88□□□□□ -0.03
RTN3-204ENST00000354497 C3orf67Q6ZVT6 689 aa14.88□□□□□ -0.03
RTN3-204ENST00000354497 UBN2Q6ZU65 1347 aa14.88□□□□□ -0.03
RTN3-204ENST00000354497 ERVV-1B6SEH8 477 aa14.87□□□□□ -0.03
RTN3-204ENST00000354497 PER1O15534 1290 aaPredicted RBP14.87□□□□□ -0.03
RTN3-204ENST00000354497 U2AF1L5P0DN76 240 aaPredicted RBP14.87□□□□□ -0.03
RTN3-204ENST00000354497 U2AF1Q01081 240 aaKnown RBP eCLIP14.87□□□□□ -0.031e-7■■■□□ 14.6
RTN3-204ENST00000354497 CDC37L1Q7L3B6 337 aa14.87□□□□□ -0.03
RTN3-204ENST00000354497 USP48Q86UV5 1035 aa14.87□□□□□ -0.03
RTN3-204ENST00000354497 SUPT20HQ8NEM7 779 aa14.87□□□□□ -0.03
RTN3-204ENST00000354497 TRPM4Q8TD43 1214 aa14.87□□□□□ -0.03
RTN3-204ENST00000354497 DPP8Q6V1X1 898 aaPredicted RBP14.86□□□□□ -0.03
RTN3-204ENST00000354497 NUDCQ9Y266 331 aa14.86□□□□□ -0.03
RTN3-204ENST00000354497 ATP6V0A2Q9Y487 856 aa14.86□□□□□ -0.03
RTN3-204ENST00000354497 CLSPNQ9HAW4 1339 aa14.86□□□□□ -0.03
RTN3-204ENST00000354497 LAMB4A4D0S4 1761 aa14.85□□□□□ -0.03
RTN3-204ENST00000354497 NTSR2O95665 410 aa14.85□□□□□ -0.03
RTN3-204ENST00000354497 HIRAP54198 1017 aaPredicted RBP14.85□□□□□ -0.03
RTN3-204ENST00000354497 TNIP1Q15025 636 aa14.85□□□□□ -0.03
RTN3-204ENST00000354497 TAF7Q15545 349 aaPredicted RBP14.85□□□□□ -0.03
RTN3-204ENST00000354497 DLK2Q6UY11 383 aa14.85□□□□□ -0.03
RTN3-204ENST00000354497 NLRP3Q96P20 1036 aa14.85□□□□□ -0.03
RTN3-204ENST00000354497 IBTKQ9P2D0 1353 aaPredicted RBP14.85□□□□□ -0.03
RTN3-204ENST00000354497 SHTN1A0MZ66 631 aa14.84□□□□□ -0.03
RTN3-204ENST00000354497 H7C1D1 291 aa14.84□□□□□ -0.03
RTN3-204ENST00000354497 PPP1R42Q7Z4L9 355 aa14.84□□□□□ -0.03
RTN3-204ENST00000354497 ZC3H15Q8WU90 426 aaKnown RBP14.84□□□□□ -0.03
RTN3-204ENST00000354497 VPS33BQ9H267 617 aa14.84□□□□□ -0.03
RTN3-204ENST00000354497 PGAP2Q9UHJ9 254 aa14.84□□□□□ -0.03
RTN3-204ENST00000354497 CNOT7Q9UIV1 285 aaKnown RBP14.84□□□□□ -0.03
RTN3-204ENST00000354497 ABCC4O15439 1325 aa14.84□□□□□ -0.03
RTN3-204ENST00000354497 RGMBQ6NW40 437 aa14.83□□□□□ -0.03
RTN3-204ENST00000354497 MICALL2Q8IY33 904 aa14.83□□□□□ -0.03
RTN3-204ENST00000354497 MPNDQ8N594 471 aa14.83□□□□□ -0.03
RTN3-204ENST00000354497 CDHR2Q9BYE9 1310 aa14.83□□□□□ -0.03
RTN3-204ENST00000354497 NUP98P52948 1817 aa14.83□□□□□ -0.04
RTN3-204ENST00000354497 TRPA1O75762 1119 aa14.83□□□□□ -0.04
RTN3-204ENST00000354497 KIF23Q02241 960 aaPredicted RBP14.83□□□□□ -0.04
RTN3-204ENST00000354497 ZNF157P51786 506 aaPredicted RBP14.82□□□□□ -0.04
RTN3-204ENST00000354497 KIAA2012Q0VF49 1180 aa14.82□□□□□ -0.04
RTN3-204ENST00000354497 TBC1D10BQ4KMP7 808 aaPredicted RBP14.82□□□□□ -0.04
RTN3-204ENST00000354497 ZNF34Q8IZ26 560 aa14.82□□□□□ -0.04
RTN3-204ENST00000354497 C2orf69Q8N8R5 385 aa14.82□□□□□ -0.04
RTN3-204ENST00000354497 UTP14AQ9BVJ6 771 aaKnown RBP14.82□□□□□ -0.04
RTN3-204ENST00000354497 GBA2Q9HCG7 927 aaPredicted RBP14.82□□□□□ -0.04
RTN3-204ENST00000354497 TNRC18O15417 2968 aaPredicted RBP14.81□□□□□ -0.04
RTN3-204ENST00000354497 HTATSF1O43719 755 aaKnown RBP14.81□□□□□ -0.04
RTN3-204ENST00000354497 PARP10Q53GL7 1025 aa14.81□□□□□ -0.04
RTN3-204ENST00000354497 RBM26Q5T8P6 1007 aaKnown RBP14.81□□□□□ -0.04
RTN3-204ENST00000354497 PRPF38BQ5VTL8 546 aaKnown RBP14.81□□□□□ -0.04
RTN3-204ENST00000354497 SAMD7Q7Z3H4 446 aa14.81□□□□□ -0.04
RTN3-204ENST00000354497 KRT26Q7Z3Y9 468 aa14.81□□□□□ -0.04
RTN3-204ENST00000354497 RTFDC1Q9BY42 306 aaPredicted RBP14.81□□□□□ -0.04
RTN3-204ENST00000354497 RNF186Q9NXI6 227 aa14.81□□□□□ -0.04
RTN3-204ENST00000354497 SAGE1Q9NXZ1 904 aa14.81□□□□□ -0.04
RTN3-204ENST00000354497 FAM155AB1AL88 458 aaPredicted RBP14.8□□□□□ -0.04
RTN3-204ENST00000354497 ADM5C9JUS6 153 aa14.8□□□□□ -0.04
RTN3-204ENST00000354497 GIGYF2Q6Y7W6 1299 aaKnown RBP14.8□□□□□ -0.04
RTN3-204ENST00000354497 SP8Q8IXZ3 490 aa14.8□□□□□ -0.04
RTN3-204ENST00000354497 PNISRQ8TF01 805 aaKnown RBP14.8□□□□□ -0.04
RTN3-204ENST00000354497 CCDC102AQ96A19 550 aa14.8□□□□□ -0.04
RTN3-204ENST00000354497 BBOX1O75936 387 aa14.79□□□□□ -0.04
RTN3-204ENST00000354497 DDX46Q7L014 1031 aaKnown RBP14.79□□□□□ -0.04
RTN3-204ENST00000354497 DCPSQ96C86 337 aaKnown RBP14.79□□□□□ -0.04
RTN3-204ENST00000354497 THUMPD2Q9BTF0 503 aaKnown RBP14.79□□□□□ -0.04
RTN3-204ENST00000354497 YDJCA8MPS7 323 aa14.78□□□□□ -0.04
RTN3-204ENST00000354497 NEFMP07197 916 aa14.78□□□□□ -0.04
RTN3-204ENST00000354497 HCLS1P14317 486 aaPredicted RBP14.78□□□□□ -0.04
RTN3-204ENST00000354497 EIF4A1P60842 406 aaKnown RBP14.78□□□□□ -0.04
RTN3-204ENST00000354497 CTU1Q7Z7A3 348 aaKnown RBP14.78□□□□□ -0.04
RTN3-204ENST00000354497 PSMD14O00487 310 aa14.77□□□□□ -0.04
RTN3-204ENST00000354497 DBNDD1Q9H9R9 158 aa14.77□□□□□ -0.04
RTN3-204ENST00000354497 RIMBP2O15034 1052 aa14.76□□□□□ -0.05
RTN3-204ENST00000354497 GRAPQ13588 217 aa14.76□□□□□ -0.05
RTN3-204ENST00000354497 SLC10A5Q5PT55 438 aa14.76□□□□□ -0.05
RTN3-204ENST00000354497 GRAPLQ8TC17 118 aaPredicted RBP14.76□□□□□ -0.05
RTN3-204ENST00000354497 ZNF428Q96B54 188 aa14.76□□□□□ -0.05
RTN3-204ENST00000354497 KDM3BQ7LBC6 1761 aa14.76□□□□□ -0.05
RTN3-204ENST00000354497 EGFRP00533 1210 aa14.75□□□□□ -0.05
RTN3-204ENST00000354497 SLC10A3P09131 477 aa14.75□□□□□ -0.05
RTN3-204ENST00000354497 EIF2S2P20042 333 aaKnown RBP14.75□□□□□ -0.05
RTN3-204ENST00000354497 CCER1Q8TC90 406 aaPredicted RBP14.75□□□□□ -0.05
RTN3-204ENST00000354497 ANXA1P04083 346 aa14.75□□□□□ -0.05
RTN3-204ENST00000354497 WASHC4Q2M389 1173 aa14.75□□□□□ -0.05
RTN3-204ENST00000354497 SULF1Q8IWU6 871 aa14.75□□□□□ -0.05
RTN3-204ENST00000354497 DPF2Q92785 391 aa14.75□□□□□ -0.05
RTN3-204ENST00000354497 CSRNP1Q96S65 589 aa14.75□□□□□ -0.05
RTN3-204ENST00000354497 TRMT112Q9UI30 125 aaKnown RBP14.75□□□□□ -0.05
RTN3-204ENST00000354497 HDAC9Q9UKV0 1011 aa14.75□□□□□ -0.05
RTN3-204ENST00000354497 HPS5Q9UPZ3 1129 aa14.75□□□□□ -0.05
RTN3-204ENST00000354497 C6orf229H3BNL8 230 aa14.74□□□□□ -0.05
RTN3-204ENST00000354497 PPP2R1AP30153 589 aa14.74□□□□□ -0.05
RTN3-204ENST00000354497 AIMP1Q12904 312 aaKnown RBP14.74□□□□□ -0.05
RTN3-204ENST00000354497 DOK7Q18PE1 504 aa14.74□□□□□ -0.05
RTN3-204ENST00000354497 KIF4BQ2VIQ3 1234 aa14.74□□□□□ -0.05
RTN3-204ENST00000354497 GGA3Q9NZ52 723 aa14.74□□□□□ -0.05
RTN3-204ENST00000354497 ERBB4Q15303 1308 aa14.73□□□□□ -0.05
RTN3-204ENST00000354497 CDCA5Q96FF9 252 aa14.73□□□□□ -0.05
RTN3-204ENST00000354497 NSFL1CQ9UNZ2 370 aaKnown RBP14.73□□□□□ -0.05
RTN3-204ENST00000354497 DUOX1Q9NRD9 1551 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms