RNA–Protein interactions for RNA: ENST00000348513.10

SMARCE1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCE1, Length 5,840 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-202ENST00000348513 TBC1D2Q9BYX2 928 aa12.7□□□□□ -0.38
SMARCE1-202ENST00000348513 SCAF11Q99590 1463 aaKnown RBP12.7□□□□□ -0.38
SMARCE1-202ENST00000348513 BUB1BO60566 1050 aaPredicted RBP12.7□□□□□ -0.38
SMARCE1-202ENST00000348513 DNAJC21Q5F1R6 531 aaKnown RBP12.7□□□□□ -0.38
SMARCE1-202ENST00000348513 IFIT3O14879 490 aaKnown RBP12.7□□□□□ -0.38
SMARCE1-202ENST00000348513 ZNF513Q8N8E2 541 aaPredicted RBP12.7□□□□□ -0.38
SMARCE1-202ENST00000348513 CWC25Q9NXE8 425 aaPredicted RBP12.7□□□□□ -0.38
SMARCE1-202ENST00000348513 CEP131Q9UPN4 1083 aa12.7□□□□□ -0.38
SMARCE1-202ENST00000348513 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.7□□□□□ -0.38
SMARCE1-202ENST00000348513 TAX1BP1Q86VP1 789 aa12.69□□□□□ -0.38
SMARCE1-202ENST00000348513 LMNTD2Q8IXW0 634 aa12.69□□□□□ -0.38
SMARCE1-202ENST00000348513 CTCFLQ8NI51 663 aaPredicted RBP12.69□□□□□ -0.38
SMARCE1-202ENST00000348513 WHAMMP3Q1A5X7 153 aa12.69□□□□□ -0.38
SMARCE1-202ENST00000348513 C8orf76Q96K31 380 aa12.69□□□□□ -0.38
SMARCE1-202ENST00000348513 CCDC114Q96M63 670 aa12.69□□□□□ -0.38
SMARCE1-202ENST00000348513 FAM184BQ9ULE4 1060 aa12.69□□□□□ -0.38
SMARCE1-202ENST00000348513 GOLGA8BA8MQT2 603 aa12.69□□□□□ -0.38
SMARCE1-202ENST00000348513 VAT1LQ9HCJ6 419 aa12.69□□□□□ -0.38
SMARCE1-202ENST00000348513 LRPPRCP42704 1394 aaKnown RBP12.69□□□□□ -0.38
SMARCE1-202ENST00000348513 SH3BGRP55822 239 aaPredicted RBP12.69□□□□□ -0.38
SMARCE1-202ENST00000348513 SLC39A6Q13433 755 aa12.69□□□□□ -0.38
SMARCE1-202ENST00000348513 CFAP100Q494V2 611 aa12.69□□□□□ -0.38
SMARCE1-202ENST00000348513 SH3GL3Q99963 347 aa12.69□□□□□ -0.38
SMARCE1-202ENST00000348513 PEX19P40855 299 aa12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 GOLGA5Q8TBA6 731 aa12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 BCL2L12Q9HB09 334 aa12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 GOLGA8AA7E2F4 631 aa12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 RIOK3O14730 519 aaKnown RBP12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 ZFYP08048 801 aaPredicted RBP12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 RFC4P35249 363 aa12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 MAP3K11Q16584 847 aa12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 LUC7LQ9NQ29 371 aaKnown RBP12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 TTC21BQ7Z4L5 1316 aa12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 URB2Q14146 1524 aaKnown RBP12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 PPP1R42Q7Z4L9 355 aa12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 CALR3Q96L12 384 aaKnown RBP12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 WWC3Q9ULE0 1092 aa12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 CCDC38Q502W7 563 aa12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 IQCA1Q86XH1 822 aa12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 ZNF500O60304 480 aaPredicted RBP12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 IRX1P78414 480 aaPredicted RBP12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 SEPT7Q16181 437 aaKnown RBP12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 SPECC1LQ69YQ0 1117 aa12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 CABLES1Q8TDN4 633 aa12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 MRFAP1Q9Y605 127 aa12.68□□□□□ -0.38
SMARCE1-202ENST00000348513 ANKRD62A6NC57 917 aa12.67□□□□□ -0.38
SMARCE1-202ENST00000348513 FEZ2Q9UHY8 353 aaPredicted RBP12.67□□□□□ -0.38
SMARCE1-202ENST00000348513 B4GALNT4Q76KP1 1039 aa12.67□□□□□ -0.38
SMARCE1-202ENST00000348513 CHPF2Q9P2E5 772 aa12.67□□□□□ -0.38
SMARCE1-202ENST00000348513 ZRANB1Q9UGI0 708 aa12.67□□□□□ -0.38
SMARCE1-202ENST00000348513 RRP15Q9Y3B9 282 aaKnown RBP12.67□□□□□ -0.38
SMARCE1-202ENST00000348513 PTPRCP08575 1304 aa12.67□□□□□ -0.38
SMARCE1-202ENST00000348513 THOC2Q8NI27 1593 aaKnown RBP12.67□□□□□ -0.38
SMARCE1-202ENST00000348513 TNRQ92752 1358 aa12.67□□□□□ -0.38
SMARCE1-202ENST00000348513 NLRP5P59047 1200 aa12.67□□□□□ -0.38
SMARCE1-202ENST00000348513 SSRP1Q08945 709 aaKnown RBP12.67□□□□□ -0.38
SMARCE1-202ENST00000348513 DDX46Q7L014 1031 aaKnown RBP12.67□□□□□ -0.38
SMARCE1-202ENST00000348513 DDX27Q96GQ7 796 aaKnown RBP12.67□□□□□ -0.38
SMARCE1-202ENST00000348513 IQSEC3Q9UPP2 1182 aaPredicted RBP12.67□□□□□ -0.38
SMARCE1-202ENST00000348513 CCDC175P0C221 793 aa12.67□□□□□ -0.38
SMARCE1-202ENST00000348513 TRMT1Q9NXH9 659 aaKnown RBP12.67□□□□□ -0.38
SMARCE1-202ENST00000348513 TUBB4AP04350 444 aa12.66□□□□□ -0.38
SMARCE1-202ENST00000348513 ERO1AQ96HE7 468 aa12.66□□□□□ -0.38
SMARCE1-202ENST00000348513 TRIM4Q9C037 500 aa12.66□□□□□ -0.38
SMARCE1-202ENST00000348513 TNIP1Q15025 636 aa12.66□□□□□ -0.38
SMARCE1-202ENST00000348513 ZBTB17Q13105 803 aa12.66□□□□□ -0.38
SMARCE1-202ENST00000348513 NBPF3Q9H094 633 aa12.66□□□□□ -0.38
SMARCE1-202ENST00000348513 NEDD9Q14511 834 aa12.66□□□□□ -0.38
SMARCE1-202ENST00000348513 RGS22Q8NE09 1264 aa12.66□□□□□ -0.38
SMARCE1-202ENST00000348513 GSDMDP57764 484 aa12.66□□□□□ -0.38
SMARCE1-202ENST00000348513 SNRPA1P09661 255 aaKnown RBP12.65□□□□□ -0.38
SMARCE1-202ENST00000348513 GDPD2Q9HCC8 539 aa12.65□□□□□ -0.38
SMARCE1-202ENST00000348513 DHX29Q7Z478 1369 aaKnown RBP12.65□□□□□ -0.38
SMARCE1-202ENST00000348513 SSFA2P28290 1259 aa12.65□□□□□ -0.38
SMARCE1-202ENST00000348513 EVI5LQ96CN4 794 aa12.65□□□□□ -0.38
SMARCE1-202ENST00000348513 SFPQP23246 707 aaKnown RBP eCLIP12.65□□□□□ -0.38
SMARCE1-202ENST00000348513 SMC1AQ14683 1233 aaKnown RBP12.65□□□□□ -0.38
SMARCE1-202ENST00000348513 ZNF365Q70YC5 407 aa12.65□□□□□ -0.38
SMARCE1-202ENST00000348513 ECHDC1Q9NTX5 307 aa12.65□□□□□ -0.38
SMARCE1-202ENST00000348513 EPB41L2O43491 1005 aaKnown RBP12.65□□□□□ -0.38
SMARCE1-202ENST00000348513 CATIPQ7Z7H3 387 aa12.65□□□□□ -0.38
SMARCE1-202ENST00000348513 CDC5LQ99459 802 aaKnown RBP12.65□□□□□ -0.38
SMARCE1-202ENST00000348513 CADPS2Q86UW7 1296 aa12.64□□□□□ -0.39
SMARCE1-202ENST00000348513 LRRC59Q96AG4 307 aaKnown RBP12.64□□□□□ -0.39
SMARCE1-202ENST00000348513 C8orf37Q96NL8 207 aa12.64□□□□□ -0.39
SMARCE1-202ENST00000348513 F8W031 263 aaPredicted RBP12.64□□□□□ -0.39
SMARCE1-202ENST00000348513 CKAP2LQ8IYA6 745 aa12.64□□□□□ -0.39
SMARCE1-202ENST00000348513 FBF1Q8TES7 1133 aa12.64□□□□□ -0.39
SMARCE1-202ENST00000348513 TMEM67Q5HYA8 995 aa12.64□□□□□ -0.39
SMARCE1-202ENST00000348513 CUL5Q93034 780 aa12.64□□□□□ -0.39
SMARCE1-202ENST00000348513 TFIP11Q9UBB9 837 aaKnown RBP12.64□□□□□ -0.39
SMARCE1-202ENST00000348513 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.64□□□□□ -0.39
SMARCE1-202ENST00000348513 KDM5BQ9UGL1 1544 aa12.64□□□□□ -0.39
SMARCE1-202ENST00000348513 PIK3R4Q99570 1358 aa12.64□□□□□ -0.39
SMARCE1-202ENST00000348513 ATP2C2O75185 946 aa12.64□□□□□ -0.39
SMARCE1-202ENST00000348513 TBC1D9Q6ZT07 1266 aa12.64□□□□□ -0.39
SMARCE1-202ENST00000348513 ANKRD13DQ6ZTN6 518 aa12.64□□□□□ -0.39
SMARCE1-202ENST00000348513 MICU3Q86XE3 530 aa12.64□□□□□ -0.39
SMARCE1-202ENST00000348513 CCDC194A0A1B0GVG4 234 aa12.64□□□□□ -0.39
SMARCE1-202ENST00000348513 CEP104O60308 925 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms