RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 IMPACTQ9P2X3 320 aa15.14■□□□□ 0.01
COL6A3-202ENST00000347401 IGHMBP2P38935 993 aaKnown RBP15.13■□□□□ 0.01
COL6A3-202ENST00000347401 FERMT2Q96AC1 680 aa15.13■□□□□ 0.01
COL6A3-202ENST00000347401 C1orf115Q9H7X2 142 aa15.13■□□□□ 0.01
COL6A3-202ENST00000347401 EXOC1Q9NV70 894 aa15.13■□□□□ 0.01
COL6A3-202ENST00000347401 AKR1B10O60218 316 aa15.13■□□□□ 0.01
COL6A3-202ENST00000347401 TMEM57Q8N5G2 664 aa15.13■□□□□ 0.01
COL6A3-202ENST00000347401 GPR161Q8N6U8 529 aaKnown RBP15.13■□□□□ 0.01
COL6A3-202ENST00000347401 ABTB2Q8N961 1025 aa15.13■□□□□ 0.01
COL6A3-202ENST00000347401 NLRP6P59044 892 aa15.13■□□□□ 0.01
COL6A3-202ENST00000347401 TRMT1Q9NXH9 659 aaKnown RBP15.13■□□□□ 0.01
COL6A3-202ENST00000347401 PSMA7O14818 248 aa15.13■□□□□ 0.01
COL6A3-202ENST00000347401 UBA7P41226 1012 aa15.13■□□□□ 0.01
COL6A3-202ENST00000347401 TMPOP42166 694 aaKnown RBP15.13■□□□□ 0.01
COL6A3-202ENST00000347401 CFAP58Q5T655 872 aa15.13■□□□□ 0.01
COL6A3-202ENST00000347401 GRIN2BQ13224 1484 aa15.13■□□□□ 0.01
COL6A3-202ENST00000347401 SYNJ1O43426 1573 aa15.13■□□□□ 0.01
COL6A3-202ENST00000347401 N4BP3O15049 544 aa15.13■□□□□ 0.01
COL6A3-202ENST00000347401 CIB2O75838 187 aa15.13■□□□□ 0.01
COL6A3-202ENST00000347401 SF3B2Q13435 895 aaKnown RBP15.13■□□□□ 0.01
COL6A3-202ENST00000347401 SNAPC4Q5SXM2 1469 aa15.13■□□□□ 0.01
COL6A3-202ENST00000347401 IQGAP2Q13576 1575 aa15.13■□□□□ 0.01
COL6A3-202ENST00000347401 BUB1BO60566 1050 aaPredicted RBP15.13■□□□□ 0.01
COL6A3-202ENST00000347401 NPHP3Q7Z494 1330 aa15.13■□□□□ 0.01
COL6A3-202ENST00000347401 ARHGAP45Q92619 1136 aa15.12■□□□□ 0.01
COL6A3-202ENST00000347401 ZNF213O14771 459 aa15.12■□□□□ 0.01
COL6A3-202ENST00000347401 MXRA7P84157 204 aa15.12■□□□□ 0.01
COL6A3-202ENST00000347401 GOLGA8BA8MQT2 603 aa15.12■□□□□ 0.01
COL6A3-202ENST00000347401 GMNNO75496 209 aa15.12■□□□□ 0.01
COL6A3-202ENST00000347401 LUC7L3O95232 432 aaKnown RBP15.12■□□□□ 0.01
COL6A3-202ENST00000347401 GABPB2Q8TAK5 448 aaPredicted RBP15.12■□□□□ 0.01
COL6A3-202ENST00000347401 GNAT3A8MTJ3 354 aa15.12■□□□□ 0.01
COL6A3-202ENST00000347401 RARSP54136 660 aaKnown RBP15.12■□□□□ 0.01
COL6A3-202ENST00000347401 PPFIA1Q13136 1202 aa15.12■□□□□ 0.01
COL6A3-202ENST00000347401 ZMYM3Q14202 1370 aa15.12■□□□□ 0.01
COL6A3-202ENST00000347401 ARAP1Q96P48 1450 aa15.12■□□□□ 0.01
COL6A3-202ENST00000347401 TAOK1Q7L7X3 1001 aa15.12■□□□□ 0.01
COL6A3-202ENST00000347401 CCDC26Q8TAB7 109 aa15.12■□□□□ 0.01
COL6A3-202ENST00000347401 CWC25Q9NXE8 425 aaPredicted RBP15.12■□□□□ 0.01
COL6A3-202ENST00000347401 NSD3Q9BZ95 1437 aa15.11■□□□□ 0.01
COL6A3-202ENST00000347401 MAP3K21Q5TCX8 1036 aa15.11■□□□□ 0.01
COL6A3-202ENST00000347401 NUTM1Q86Y26 1132 aa15.11■□□□□ 0.01
COL6A3-202ENST00000347401 RUFY4Q6ZNE9 571 aa15.11■□□□□ 0.01
COL6A3-202ENST00000347401 MSANTD4Q8NCY6 345 aa15.11■□□□□ 0.01
COL6A3-202ENST00000347401 ELP1O95163 1332 aa15.11■□□□□ 0.01
COL6A3-202ENST00000347401 GGNBP2Q9H3C7 697 aa15.11■□□□□ 0.01
COL6A3-202ENST00000347401 PCF11O94913 1555 aaKnown RBP15.11■□□□□ 0.01
COL6A3-202ENST00000347401 PPP2R5EQ16537 467 aa15.11■□□□□ 0.01
COL6A3-202ENST00000347401 AMOTQ4VCS5 1084 aa15.11■□□□□ 0.01
COL6A3-202ENST00000347401 CNNM2Q9H8M5 875 aa15.11■□□□□ 0.01
COL6A3-202ENST00000347401 PLCB1Q9NQ66 1216 aa15.11■□□□□ 0.01
COL6A3-202ENST00000347401 NLRP2Q9NX02 1062 aa15.11■□□□□ 0.01
COL6A3-202ENST00000347401 SYT1P21579 422 aa15.11■□□□□ 0.01
COL6A3-202ENST00000347401 WDR78Q5VTH9 848 aa15.11■□□□□ 0.01
COL6A3-202ENST00000347401 RUSC2Q8N2Y8 1516 aa15.11■□□□□ 0.01
COL6A3-202ENST00000347401 CCDC40Q4G0X9 1142 aa15.1■□□□□ 0.01
COL6A3-202ENST00000347401 FEZ2Q9UHY8 353 aaPredicted RBP15.1■□□□□ 0.01
COL6A3-202ENST00000347401 MPHOSPH10O00566 681 aaKnown RBP15.1■□□□□ 0.01
COL6A3-202ENST00000347401 AFAP1L1Q8TED9 768 aa15.1■□□□□ 0.01
COL6A3-202ENST00000347401 CFAP43Q8NDM7 1665 aa15.1■□□□□ 0.01
COL6A3-202ENST00000347401 TROQ12816 1431 aaPredicted RBP15.1■□□□□ 0.01
COL6A3-202ENST00000347401 CAVIN4Q5BKX8 364 aa15.1■□□□□ 0.01
COL6A3-202ENST00000347401 BTBD11A6QL63 1104 aa15.1■□□□□ 0.01
COL6A3-202ENST00000347401 DUSP27Q5VZP5 1158 aa15.1■□□□□ 0.01
COL6A3-202ENST00000347401 TCHPQ9BT92 498 aa15.1■□□□□ 0.01
COL6A3-202ENST00000347401 ADGBQ8N7X0 1667 aa15.1■□□□□ 0.01
COL6A3-202ENST00000347401 TRPC3Q13507 836 aa15.1■□□□□ 0.01
COL6A3-202ENST00000347401 MAP7Q14244 749 aa15.1■□□□□ 0.01
COL6A3-202ENST00000347401 CKAP2LQ8IYA6 745 aa15.1■□□□□ 0.01
COL6A3-202ENST00000347401 MPHOSPH6Q99547 160 aaKnown RBP15.1■□□□□ 0.01
COL6A3-202ENST00000347401 GJB2P29033 226 aa15.09■□□□□ 0.01
COL6A3-202ENST00000347401 MTUS1Q9ULD2 1270 aa15.09■□□□□ 0.01
COL6A3-202ENST00000347401 RTEL1-TNFRSF6BF6WH68 1400 aa15.09■□□□□ 0.01
COL6A3-202ENST00000347401 KDM5AP29375 1690 aaKnown RBP15.09■□□□□ 0.01
COL6A3-202ENST00000347401 TTC21BQ7Z4L5 1316 aa15.09■□□□□ 0.01
COL6A3-202ENST00000347401 NUTM2DQ5VT03 806 aaPredicted RBP15.09■□□□□ 0.01
COL6A3-202ENST00000347401 FYB2Q5VWT5 728 aa15.09■□□□□ 0.01
COL6A3-202ENST00000347401 SPDYE4A6NLX3 237 aa15.09■□□□□ 0.01
COL6A3-202ENST00000347401 ACTN4O43707 911 aaKnown RBP15.09■□□□□ 0.01
COL6A3-202ENST00000347401 NUTM2FA1L443 756 aa15.09■□□□□ 0.01
COL6A3-202ENST00000347401 STARD3NLO95772 234 aa15.09■□□□□ 0.01
COL6A3-202ENST00000347401 NAA25Q14CX7 972 aa15.09■□□□□ 0.01
COL6A3-202ENST00000347401 TBC1D9Q6ZT07 1266 aa15.09■□□□□ 0.01
COL6A3-202ENST00000347401 BRAPQ7Z569 592 aa15.09■□□□□ 0.01
COL6A3-202ENST00000347401 ZNF853P0CG23 659 aa15.09■□□□□ 0.01
COL6A3-202ENST00000347401 USP5P45974 858 aa15.09■□□□□ 0.01
COL6A3-202ENST00000347401 PDE4BQ07343 736 aa15.09■□□□□ 0.01
COL6A3-202ENST00000347401 SCLT1Q96NL6 688 aa15.09■□□□□ 0.01
COL6A3-202ENST00000347401 NKIRAS1Q9NYS0 192 aa15.09■□□□□ 0.01
COL6A3-202ENST00000347401 TSKSQ9UJT2 592 aa15.09■□□□□ 0.01
COL6A3-202ENST00000347401 STMN1P16949 149 aa15.08■□□□□ 0.01
COL6A3-202ENST00000347401 CASQ2O14958 399 aaPredicted RBP15.08■□□□□ 0.01
COL6A3-202ENST00000347401 PPFIA2O75334 1257 aa15.08■□□□□ 0.01
COL6A3-202ENST00000347401 PRPF4BQ13523 1007 aaKnown RBP15.08■□□□□ 0.01
COL6A3-202ENST00000347401 GNAQP50148 359 aa15.08■□□□□ 0
COL6A3-202ENST00000347401 ATP2B2Q01814 1243 aa15.08■□□□□ 0
COL6A3-202ENST00000347401 MRPS27Q92552 414 aaKnown RBP15.08■□□□□ 0
COL6A3-202ENST00000347401 HCLS1P14317 486 aaPredicted RBP15.08■□□□□ 0
COL6A3-202ENST00000347401 DZIP1Q86YF9 867 aaKnown RBP15.08■□□□□ 0
COL6A3-202ENST00000347401 TMOD2Q9NZR1 351 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 1649.4 ms