RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 TJP1Q07157 1748 aa18.52■□□□□ 0.55
UPF3B-202ENST00000345865 TAF5LO75529 589 aa18.51■□□□□ 0.55
UPF3B-202ENST00000345865 GJB2P29033 226 aa18.51■□□□□ 0.55
UPF3B-202ENST00000345865 CCDC173Q0VFZ6 552 aa18.51■□□□□ 0.55
UPF3B-202ENST00000345865 TCEANC2Q96MN5 208 aa18.51■□□□□ 0.55
UPF3B-202ENST00000345865 PAPPAQ13219 1627 aa18.51■□□□□ 0.55
UPF3B-202ENST00000345865 IL2RBP14784 551 aa18.51■□□□□ 0.55
UPF3B-202ENST00000345865 CLCN1P35523 988 aa18.51■□□□□ 0.55
UPF3B-202ENST00000345865 ZBTB3Q9H5J0 574 aa18.51■□□□□ 0.55
UPF3B-202ENST00000345865 CNPY2Q9Y2B0 182 aa18.51■□□□□ 0.55
UPF3B-202ENST00000345865 STRCQ7RTU9 1775 aa18.51■□□□□ 0.55
UPF3B-202ENST00000345865 ESPNB1AK53 854 aa18.5■□□□□ 0.55
UPF3B-202ENST00000345865 ATG9AQ7Z3C6 839 aa18.5■□□□□ 0.55
UPF3B-202ENST00000345865 CARD10Q9BWT7 1032 aa18.5■□□□□ 0.55
UPF3B-202ENST00000345865 STRN4Q9NRL3 753 aa18.5■□□□□ 0.55
UPF3B-202ENST00000345865 CHMP3Q9Y3E7 222 aa18.5■□□□□ 0.55
UPF3B-202ENST00000345865 ZNF335Q9H4Z2 1342 aaPredicted RBP18.5■□□□□ 0.55
UPF3B-202ENST00000345865 ABCA3Q99758 1704 aa18.5■□□□□ 0.55
UPF3B-202ENST00000345865 ZSCAN31Q96LW9 406 aaPredicted RBP18.5■□□□□ 0.55
UPF3B-202ENST00000345865 SEC62Q99442 399 aaKnown RBP18.5■□□□□ 0.55
UPF3B-202ENST00000345865 ANO8Q9HCE9 1232 aaPredicted RBP18.5■□□□□ 0.55
UPF3B-202ENST00000345865 SH2B1Q9NRF2 756 aaPredicted RBP18.5■□□□□ 0.55
UPF3B-202ENST00000345865 CWC25Q9NXE8 425 aaPredicted RBP18.5■□□□□ 0.55
UPF3B-202ENST00000345865 F13A1P00488 732 aa18.49■□□□□ 0.55
UPF3B-202ENST00000345865 TRIM44Q96DX7 344 aaPredicted RBP18.49■□□□□ 0.55
UPF3B-202ENST00000345865 DNAJC2Q99543 621 aaKnown RBP18.49■□□□□ 0.55
UPF3B-202ENST00000345865 CCDC9Q9Y3X0 531 aaKnown RBP18.49■□□□□ 0.55
UPF3B-202ENST00000345865 ZNF609O15014 1411 aa18.49■□□□□ 0.55
UPF3B-202ENST00000345865 CCDC129Q6ZRS4 1044 aa18.49■□□□□ 0.55
UPF3B-202ENST00000345865 TMEM87AQ8NBN3 555 aa18.49■□□□□ 0.55
UPF3B-202ENST00000345865 HAUS7Q99871 368 aa18.49■□□□□ 0.55
UPF3B-202ENST00000345865 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.49■□□□□ 0.55
UPF3B-202ENST00000345865 MTMR6Q9Y217 621 aa18.49■□□□□ 0.55
UPF3B-202ENST00000345865 USPL1Q5W0Q7 1092 aa18.48■□□□□ 0.55
UPF3B-202ENST00000345865 TNS2Q63HR2 1409 aa18.48■□□□□ 0.55
UPF3B-202ENST00000345865 DDX46Q7L014 1031 aaKnown RBP18.48■□□□□ 0.55
UPF3B-202ENST00000345865 TOGARAM1Q9Y4F4 1720 aa18.47■□□□□ 0.55
UPF3B-202ENST00000345865 RPS6KB1P23443 525 aa18.47■□□□□ 0.55
UPF3B-202ENST00000345865 TIMM10P62072 90 aa18.47■□□□□ 0.55
UPF3B-202ENST00000345865 TOB2Q14106 344 aaPredicted RBP18.47■□□□□ 0.55
UPF3B-202ENST00000345865 ZNF594Q96JF6 807 aaPredicted RBP18.47■□□□□ 0.55
UPF3B-202ENST00000345865 PSMA5P28066 241 aa18.46■□□□□ 0.55
UPF3B-202ENST00000345865 TSGA10IPQ3SY00 556 aa18.46■□□□□ 0.55
UPF3B-202ENST00000345865 SLFNL1Q499Z3 407 aa18.46■□□□□ 0.55
UPF3B-202ENST00000345865 LRRC24Q50LG9 513 aa18.46■□□□□ 0.55
UPF3B-202ENST00000345865 RNF20Q5VTR2 975 aa18.46■□□□□ 0.55
UPF3B-202ENST00000345865 BLOC1S2Q6QNY1 142 aa18.46■□□□□ 0.55
UPF3B-202ENST00000345865 CCDC191Q8NCU4 936 aa18.45■□□□□ 0.54
UPF3B-202ENST00000345865 ANP32BQ92688 251 aaKnown RBP18.45■□□□□ 0.54
UPF3B-202ENST00000345865 PDLIM2Q96JY6 352 aa18.45■□□□□ 0.54
UPF3B-202ENST00000345865 NEUROD6Q96NK8 337 aa18.44■□□□□ 0.54
UPF3B-202ENST00000345865 HMG20BQ9P0W2 317 aa18.44■□□□□ 0.54
UPF3B-202ENST00000345865 EVA1CP58658 441 aa18.44■□□□□ 0.54
UPF3B-202ENST00000345865 DNM1Q05193 864 aaKnown RBP18.44■□□□□ 0.54
UPF3B-202ENST00000345865 TPRNQ4KMQ1 711 aa18.44■□□□□ 0.54
UPF3B-202ENST00000345865 RNF214Q8ND24 703 aa18.44■□□□□ 0.54
UPF3B-202ENST00000345865 PUS3Q9BZE2 481 aaKnown RBP18.44■□□□□ 0.54
UPF3B-202ENST00000345865 ALDH8A1Q9H2A2 487 aaPredicted RBP18.44■□□□□ 0.54
UPF3B-202ENST00000345865 RFX7Q2KHR2 1363 aa18.43■□□□□ 0.54
UPF3B-202ENST00000345865 FIBPO43427 364 aa18.43■□□□□ 0.54
UPF3B-202ENST00000345865 KBTBD3Q8NAB2 608 aa18.43■□□□□ 0.54
UPF3B-202ENST00000345865 MCMDC2Q4G0Z9 681 aa18.43■□□□□ 0.54
UPF3B-202ENST00000345865 VPS37CA5D8V6 355 aaPredicted RBP18.42■□□□□ 0.54
UPF3B-202ENST00000345865 GOLIM4O00461 696 aa18.42■□□□□ 0.54
UPF3B-202ENST00000345865 CYP21A2P08686 494 aa18.42■□□□□ 0.54
UPF3B-202ENST00000345865 ISCA1Q9BUE6 129 aa18.42■□□□□ 0.54
UPF3B-202ENST00000345865 DNAJC5Q9H3Z4 198 aa18.42■□□□□ 0.54
UPF3B-202ENST00000345865 ASAP1Q9ULH1 1129 aa18.42■□□□□ 0.54
UPF3B-202ENST00000345865 EYA2O00167 538 aa18.41■□□□□ 0.54
UPF3B-202ENST00000345865 IL15P40933 162 aaPredicted RBP18.41■□□□□ 0.54
UPF3B-202ENST00000345865 SYAP1Q96A49 352 aaPredicted RBP18.41■□□□□ 0.54
UPF3B-202ENST00000345865 GPR108Q9NPR9 543 aa18.41■□□□□ 0.54
UPF3B-202ENST00000345865 TMOD3Q9NYL9 352 aa18.41■□□□□ 0.54
UPF3B-202ENST00000345865 ZNF330Q9Y3S2 320 aaPredicted RBP18.41■□□□□ 0.54
UPF3B-202ENST00000345865 UBE2HP62256 183 aa18.4■□□□□ 0.54
UPF3B-202ENST00000345865 STK3Q13188 491 aa18.4■□□□□ 0.54
UPF3B-202ENST00000345865 ANKRD1Q15327 319 aa18.4■□□□□ 0.54
UPF3B-202ENST00000345865 LARP1BQ659C4 914 aaKnown RBP18.4■□□□□ 0.54
UPF3B-202ENST00000345865 CDC37L1Q7L3B6 337 aa18.4■□□□□ 0.54
UPF3B-202ENST00000345865 PIGBQ92521 554 aa18.4■□□□□ 0.54
UPF3B-202ENST00000345865 TSPY26PQ9H489 355 aa18.4■□□□□ 0.54
UPF3B-202ENST00000345865 PAG1Q9NWQ8 432 aa18.4■□□□□ 0.54
UPF3B-202ENST00000345865 ATP6V1DQ9Y5K8 247 aa18.4■□□□□ 0.54
UPF3B-202ENST00000345865 TCIRG1Q13488 830 aa18.4■□□□□ 0.54
UPF3B-202ENST00000345865 DNAJC10Q8IXB1 793 aa18.4■□□□□ 0.54
UPF3B-202ENST00000345865 NEK1Q96PY6 1258 aa18.4■□□□□ 0.54
UPF3B-202ENST00000345865 PALLDQ8WX93 1383 aa18.4■□□□□ 0.54
UPF3B-202ENST00000345865 SH3TC1Q8TE82 1336 aa18.4■□□□□ 0.54
UPF3B-202ENST00000345865 A0A1B0GUL7 405 aa18.39■□□□□ 0.53
UPF3B-202ENST00000345865 STOX1Q6ZVD7 989 aa18.39■□□□□ 0.53
UPF3B-202ENST00000345865 FAM173BQ6P4H8 233 aa18.39■□□□□ 0.53
UPF3B-202ENST00000345865 U3KPZ7 1027 aaPredicted RBP18.39■□□□□ 0.53
UPF3B-202ENST00000345865 FERMT3Q86UX7 667 aa18.38■□□□□ 0.53
UPF3B-202ENST00000345865 A0A0G2JLW4 131 aa18.38■□□□□ 0.53
UPF3B-202ENST00000345865 CIAO1O76071 339 aa18.38■□□□□ 0.53
UPF3B-202ENST00000345865 KRT32Q14532 448 aa18.38■□□□□ 0.53
UPF3B-202ENST00000345865 CCDC183Q5T5S1 534 aa18.38■□□□□ 0.53
UPF3B-202ENST00000345865 ATG3Q9NT62 314 aa18.38■□□□□ 0.53
UPF3B-202ENST00000345865 LAMA4Q16363 1823 aa18.37■□□□□ 0.53
UPF3B-202ENST00000345865 ZSCAN30Q86W11 494 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms